Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004559.1 Hibiscus syriacus cultivar Beakdansim tig00010133_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65596
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Found at i:1095 original size:18 final size:16
Alignment explanation
Indices: 1074--1117 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
1064 ATGGAAAGAG
1074 AAATAAAAATAAGGAAAT
1 AAATAAAAA-AAGG-AAT
*
1092 AAATAAATGAAAGGAAT
1 AAATAAA-AAAAGGAAT
1109 AAATAAAAA
1 AAATAAAAA
1118 GAATATTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.04
17 10 0.43
18 11 0.48
19 1 0.04
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (16 bp):
AAATAAAAAAAGGAAT
Found at i:8843 original size:6 final size:6
Alignment explanation
Indices: 8832--8865 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
8822 ATATCTCCTC
*
8832 CCTCTA CCTCTA CCTCTA CCTTTA CCTCTA CCTC
1 CCTCTA CCTCTA CCTCTA CCTCTA CCTCTA CCTC
8866 AGCCACCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.50, G:0.00, T:0.35
Consensus pattern (6 bp):
CCTCTA
Found at i:10632 original size:2 final size:2
Alignment explanation
Indices: 10625--10671 Score: 53
Period size: 2 Copynumber: 24.0 Consensus size: 2
10615 AAAGGTGAGA
*
10625 AT AT AT AT AT AT AT AT AT AT AT AT A- AT CA- AA AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
*
10666 AA AT AT
1 AT AT AT
10672 TTAAAAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
1 2 0.05
2 36 0.92
3 1 0.03
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:10679 original size:23 final size:24
Alignment explanation
Indices: 10631--10681 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
10621 GAGAATATAT
*
10631 ATATATATATATATATATAATCAAA
1 ATATATATATAAATATATAA-CAAA
*
10656 ATATATATATAAATATTTAA-AAA
1 ATATATATATAAATATATAACAAA
10679 ATA
1 ATA
10682 ATTCAGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 6 0.25
25 18 0.75
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (24 bp):
ATATATATATAAATATATAACAAA
Found at i:14319 original size:22 final size:22
Alignment explanation
Indices: 14261--14353 Score: 82
Period size: 22 Copynumber: 4.3 Consensus size: 22
14251 GACCAAAACT
* * * *
14261 AATCAGCATTCAAACGATTTCT
1 AATCAACATTCAGACGAATTCC
*
14283 AATCAACATTTAGACGAATTCC
1 AATCAACATTCAGACGAATTCC
* *
14305 AAT-AAGCATTCAGACCAAGTCC
1 AATCAA-CATTCAGACGAATTCC
* *
14327 AATCAACATTCATACCAA-TCC
1 AATCAACATTCAGACGAATTCC
14348 AATCAA
1 AATCAA
14354 TGGTAAAGCT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
21 11 0.18
22 47 0.78
23 2 0.03
ACGTcount: A:0.42, C:0.26, G:0.08, T:0.25
Consensus pattern (22 bp):
AATCAACATTCAGACGAATTCC
Found at i:15156 original size:27 final size:26
Alignment explanation
Indices: 15116--15166 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
15106 TTCCAGTCCT
*
15116 TGAAACAGTTAAATTAAAATCAAAATTA
1 TGAAACAGATAAA-TAAAAT-AAAATTA
15144 TGAAA-AGATAAATAAAATAAAAT
1 TGAAACAGATAAATAAAATAAAAT
15167 AGTTATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 6 0.27
27 6 0.27
28 5 0.23
ACGTcount: A:0.63, C:0.04, G:0.08, T:0.25
Consensus pattern (26 bp):
TGAAACAGATAAATAAAATAAAATTA
Found at i:15203 original size:14 final size:14
Alignment explanation
Indices: 15184--15226 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
15174 ATTGTGAAAA
15184 TAAAATAATCAAAT
1 TAAAATAATCAAAT
*
15198 TAAAATAATTAAGAT
1 TAAAATAATCAA-AT
*
15213 TATAAAAAATCAAA
1 TA-AAATAATCAAA
15227 CTGAAATAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 11 0.46
15 5 0.21
16 8 0.33
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (14 bp):
TAAAATAATCAAAT
Found at i:15243 original size:30 final size:31
Alignment explanation
Indices: 15183--15243 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
15173 AATTGTGAAA
* *
15183 ATAAAATAATCAAATTAAAATAATTAAGATT
1 ATAAAATAATCAAACTAAAATAACTAAGATT
*
15214 ATAAAA-AATCAAACTGAAATAGACT-AGATT
1 ATAAAATAATCAAACTAAAATA-ACTAAGATT
15244 TTTTAAAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (31 bp):
ATAAAATAATCAAACTAAAATAACTAAGATT
Found at i:15404 original size:2 final size:2
Alignment explanation
Indices: 15344--15385 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
15334 ATTTTGAATA
15344 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15386 TAACAAACTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17363 original size:2 final size:2
Alignment explanation
Indices: 17356--17540 Score: 154
Period size: 2 Copynumber: 93.5 Consensus size: 2
17346 AGTCTTACGC
*
17356 AT AT AT AT AT AT AT AT AT ACT -T AT AT ACT -T AT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT A-T AT AT AT A-T AT AT AT AT AT AT AT
* * *
17398 AT ACT -T AT A- AT GT AT ACT -T AT AT -T AT AT GT GT AT AT AT AT
1 AT A-T AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
* *
17438 AT AT AT AT AT AT AT AT -T AT AT AA AT AT AA ACT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* *
17479 AT AT AT AT AT AT AT CT AT AT AT A- AT AT AT AT AT CT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
17520 AA AT AT AA ACT AT AGT AT AT A
1 AT AT AT AT A-T AT A-T AT AT A
17541 GTTTATATGT
Statistics
Matches: 149, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
1 9 0.06
2 132 0.89
3 8 0.05
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:17533 original size:25 final size:25
Alignment explanation
Indices: 17429--17540 Score: 104
Period size: 25 Copynumber: 4.5 Consensus size: 25
17419 ATTATATGTG
* *
17429 TATATATATATATATATATATATAT
1 TATATATATATATATATAAATATAA
* * *
17454 TATATAAATATAAACTAT-ATTAT-A
1 TATATATATATATA-TATAAATATAA
* *
17478 TATATATATATATATCTATATATAA
1 TATATATATATATATATAAATATAA
*
17503 TATATATATCTATATATAAATATAA
1 TATATATATATATATATAAATATAA
17528 -ACTATAGTATATA
1 TA-TATA-TATATA
17541 GTTTATATGT
Statistics
Matches: 68, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
23 2 0.03
24 16 0.24
25 42 0.62
26 8 0.12
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.46
Consensus pattern (25 bp):
TATATATATATATATATAAATATAA
Found at i:19755 original size:17 final size:17
Alignment explanation
Indices: 19733--19767 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
19723 CTCGATGAAA
19733 TTTTTATCGTTTTTAAT
1 TTTTTATCGTTTTTAAT
19750 TTTTTATCGTTTTTAAT
1 TTTTTATCGTTTTTAAT
19767 T
1 T
19768 GTGTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTTTATCGTTTTTAAT
Found at i:19932 original size:13 final size:13
Alignment explanation
Indices: 19907--19940 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
19897 AAGTATAGTT
19907 TATATAG-TTTTA
1 TATATAGTTTTTA
19919 TATATAGTTTTTA
1 TATATAGTTTTTA
19932 TATATAGTT
1 TATATAGTT
19941 CATATGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (13 bp):
TATATAGTTTTTA
Found at i:19978 original size:13 final size:13
Alignment explanation
Indices: 19960--19990 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
19950 ACTATATAGT
19960 ATATATAGTTTAC
1 ATATATAGTTTAC
19973 ATATATAGTTTAC
1 ATATATAGTTTAC
19986 ATATA
1 ATATA
19991 ATATATATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (13 bp):
ATATATAGTTTAC
Found at i:19998 original size:42 final size:43
Alignment explanation
Indices: 19907--20015 Score: 114
Period size: 42 Copynumber: 2.5 Consensus size: 43
19897 AAGTATAGTT
** * *
19907 TATATAGTTTTATATATAGTTTTTATATATAGTTCATATGTAAAC
1 TATATAG--TTATATATAGTTTACATATATAGTTCACATATAAAC
*
19952 TATATAG-TATATATAGTTTACATATATAGTTTACATATAATA-
1 TATATAGTTATATATAGTTTACATATATAGTTCACATATAA-AC
*
19994 TATATGGTTTATATATAGTTTA
1 TATATAG-TTATATATAGTTTA
20016 TATACTACTA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
42 34 0.62
43 1 0.02
44 13 0.24
45 7 0.13
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.50
Consensus pattern (43 bp):
TATATAGTTATATATAGTTTACATATATAGTTCACATATAAAC
Found at i:20007 original size:13 final size:11
Alignment explanation
Indices: 19907--20019 Score: 69
Period size: 11 Copynumber: 10.4 Consensus size: 11
19897 AAGTATAGTT
19907 TATATAGTTTTA
1 TATATAG-TTTA
19919 TATATAGTTTTTA
1 TATATAG--TTTA
19932 TATATAG-TT-
1 TATATAGTTTA
* **
19941 CATAT-GTAAA
1 TATATAGTTTA
19951 CTATATAG--TA
1 -TATATAGTTTA
19961 TATATAGTTTACA
1 TATATAGTTT--A
19974 TATATAGTTTA
1 TATATAGTTTA
* *
19985 CATATA--ATA
1 TATATAGTTTA
*
19994 TATATGGTTTA
1 TATATAGTTTA
20005 TATATAGTTTA
1 TATATAGTTTA
20016 TATA
1 TATA
20020 CTACTATGTA
Statistics
Matches: 79, Mismatches: 11, Indels: 23
0.70 0.10 0.20
Matches are distributed among these distances:
8 1 0.01
9 17 0.22
10 3 0.04
11 27 0.34
12 8 0.10
13 23 0.29
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.50
Consensus pattern (11 bp):
TATATAGTTTA
Found at i:20018 original size:20 final size:20
Alignment explanation
Indices: 19973--20010 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19963 TATAGTTTAC
19973 ATATATAGTTTACATATAAT
1 ATATATAGTTTACATATAAT
* *
19993 ATATATGGTTTATATATA
1 ATATATAGTTTACATATA
20011 GTTTATATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (20 bp):
ATATATAGTTTACATATAAT
Found at i:20228 original size:26 final size:26
Alignment explanation
Indices: 20165--20229 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
20155 ATTAATAATC
20165 TATATAATTTATACATAGTATATATAA
1 TATATAA-TTATACATAGTATATATAA
*
20192 TTTATAATTATACATAGTATATATAA
1 TATATAATTATACATAGTATATATAA
20218 -ATATAAGTTATA
1 TATATAA-TTATA
20230 TAGTTTATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
25 5 0.14
26 24 0.69
27 6 0.17
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.45
Consensus pattern (26 bp):
TATATAATTATACATAGTATATATAA
Found at i:20276 original size:54 final size:57
Alignment explanation
Indices: 20209--20361 Score: 163
Period size: 61 Copynumber: 2.7 Consensus size: 57
20199 TTATACATAG
* * *
20209 TATATA-TAAATATAAGTTATATAGTTTATA-TATATCGATTA-TAT-TTAT-ATTA
1 TATATACTATATATAAATTATATAGTTTATATTATATAGATTAGTATATTATAATTA
* *
20261 TTATATACTATATATAAACTATATAGTTTATATTTATATATATTATGTATAATTATAAATTA
1 -TATATACTATATATAAATTATATAGTTTATA-TTATATAGATTA-GTAT-ATTAT-AATTA
*
20323 TATATACTATGTATAAATTATATAGTTTATACTTATATA
1 TATATACTATATATAAATTATATAGTTTATA-TTATATA
20362 CTACTATGTA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
53 6 0.07
54 21 0.25
56 9 0.11
58 3 0.04
60 4 0.05
61 36 0.43
62 4 0.05
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (57 bp):
TATATACTATATATAAATTATATAGTTTATATTATATAGATTAGTATATTATAATTA
Found at i:20311 original size:26 final size:26
Alignment explanation
Indices: 20294--20344 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20284 TAGTTTATAT
*
20294 TTATATATATTATGTATAATTATAAA
1 TTATATATACTATGTATAATTATAAA
20320 TTATATATACTATGTATAAATTATA
1 TTATATATACTATGTAT-AATTATA
20345 TAGTTTATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (26 bp):
TTATATATACTATGTATAATTATAAA
Found at i:20339 original size:20 final size:20
Alignment explanation
Indices: 20314--20382 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 20
20304 TATGTATAAT
20314 TATAAATTATATATACTATG
1 TATAAATTATATATACTATG
*
20334 TATAAA-T-TATATAGT-T-
1 TATAAATTATATATACTATG
*
20350 TAT-ACTTATATACTACTATG
1 TATAAATTATATA-TACTATG
*
20370 TATAAACTATATA
1 TATAAATTATATA
20383 ATTTATATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 11
0.70 0.09 0.20
Matches are distributed among these distances:
15 1 0.03
16 4 0.11
17 5 0.13
18 10 0.26
19 2 0.05
20 9 0.24
21 7 0.18
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAATTATATATACTATG
Found at i:20367 original size:36 final size:35
Alignment explanation
Indices: 20320--20389 Score: 113
Period size: 36 Copynumber: 2.0 Consensus size: 35
20310 TAATTATAAA
* *
20320 TTATATATACTATGTATAAATTATATAGTTTATAC
1 TTATATATACTATGTATAAACTATATAATTTATAC
20355 TTATATACTACTATGTATAAACTATATAATTTATA
1 TTATATA-TACTATGTATAAACTATATAATTTATA
20390 TATTGTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 7 0.22
36 25 0.78
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.47
Consensus pattern (35 bp):
TTATATATACTATGTATAAACTATATAATTTATAC
Found at i:47036 original size:7 final size:8
Alignment explanation
Indices: 47019--47048 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
47009 AATGAGGTTT
47019 AAAAATAA
1 AAAAATAA
47027 AAAAATAA
1 AAAAATAA
47035 AAAAATAA
1 AAAAATAA
47043 ATAAAA
1 A-AAAA
47049 AGTAATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:47584 original size:35 final size:35
Alignment explanation
Indices: 47545--47619 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
47535 AAAATACTTT
47545 AATTTAGGGTTTAGAATATAATTAAAGTATTTTAG
1 AATTTAGGGTTTAGAATATAATTAAAGTATTTTAG
* * * *
47580 AATTTAGGGTTTAGAATGTAATTGAAGTGTTTTGG
1 AATTTAGGGTTTAGAATATAATTAAAGTATTTTAG
47615 AATTT
1 AATTT
47620 TGAACATGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (35 bp):
AATTTAGGGTTTAGAATATAATTAAAGTATTTTAG
Found at i:50214 original size:39 final size:39
Alignment explanation
Indices: 50171--50255 Score: 109
Period size: 39 Copynumber: 2.2 Consensus size: 39
50161 TTTAAAAAAT
50171 AATTTAGAATGATAATGT-GAAATAATTTAAGAAATTAAA
1 AATTTAGAATGATAATGTAGAAA-AATTTAAGAAATTAAA
* * * **
50210 AATTTAGAATGTTATTGTAGCAAAATTTAAGAAATTAGG
1 AATTTAGAATGATAATGTAGAAAAATTTAAGAAATTAAA
50249 AATTTAG
1 AATTTAG
50256 GATGTTAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.93
40 3 0.08
ACGTcount: A:0.48, C:0.01, G:0.15, T:0.35
Consensus pattern (39 bp):
AATTTAGAATGATAATGTAGAAAAATTTAAGAAATTAAA
Found at i:50276 original size:39 final size:40
Alignment explanation
Indices: 50189--50289 Score: 100
Period size: 39 Copynumber: 2.6 Consensus size: 40
50179 ATGATAATGT
***
50189 GAAATAATTTAAGAAATTAAAAATTTAGAATGTTATTGTA
1 GAAATAATTTAAGAAATTAAAAATTTAGAATGTTAGAATA
* ** *
50229 GCAA-AATTTAAGAAATTAGGAATTTAGGATGTTAGAATA
1 GAAATAATTTAAGAAATTAAAAATTTAGAATGTTAGAATA
* *
50268 -AAATAATTTGA-AAATTATAAAT
1 GAAATAATTTAAGAAATTAAAAAT
50290 AAACATTTAA
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
38 11 0.22
39 35 0.71
40 3 0.06
ACGTcount: A:0.50, C:0.01, G:0.14, T:0.35
Consensus pattern (40 bp):
GAAATAATTTAAGAAATTAAAAATTTAGAATGTTAGAATA
Found at i:51086 original size:36 final size:36
Alignment explanation
Indices: 51004--51432 Score: 330
Period size: 36 Copynumber: 11.6 Consensus size: 36
50994 ATTCTTTTAT
** **
51004 ATATATATATATATATAGTTTGCAAATGATTTTTGAAA
1 ATATATATA-ATATATAGTTTTTAAAACA-TTTTGAAA
*
51042 TATATATATAATATATAGTTTTTAAAATATTTTGAAA
1 -ATATATATAATATATAGTTTTTAAAACATTTTGAAA
* * *
51079 ACT-TATATAATATATAGTTTTCAAAGCGTTTTGAAAATA
1 A-TATATATAATATATAGTTTTTAAAACATTTTG--AA-A
* *
51118 TATATATATATATAACATATAGTTTTTTTAAATCGTTTTGAAA
1 -ATATATATA-AT---ATATAG--TTTTTAAAACATTTTGAAA
* *
51161 ATATATATAATATATAGTTTTTAAATCATTTTGTATAT
1 ATATATATAATATATAGTTTTTAAAACATTTTG-A-AA
*
51199 ATATATATAATATATAGTTTTTAAAACCTTTTGAAAA
1 ATATATATAATATATAGTTTTTAAAACATTTTG-AAA
*
51236 CATGTATATATATATATATAGTATTTAAAACATTTTGAAA
1 -A--TATATATA-ATATATAGTTTTTAAAACATTTTGAAA
51276 ATATATATAATATATAGTTTTTAAAACATTTTG-AA
1 ATATATATAATATATAGTTTTTAAAACATTTTGAAA
*
51311 A-ACATATAATATATAG-TTTTAAAACATTTTTG--A
1 ATATATATAATATATAGTTTTTAAAACA-TTTTGAAA
* * *
51344 A-A-A-CT-ATATA-A-TTTTGAAAACATTTTTAAAAA
1 ATATATATAATATATAGTTTTTAAAACA-TTTT-GAAA
* *
51376 ATATATATAATATATA-ATTTTAAAATACTTTT-AAA
1 ATATATATAATATATAGTTTTTAAAACA-TTTTGAAA
*
51411 A-ATATATATTATATAGGTTTTT
1 ATATATATAATATATA-GTTTTT
51433 GGAAAATATC
Statistics
Matches: 330, Mismatches: 30, Indels: 63
0.78 0.07 0.15
Matches are distributed among these distances:
29 15 0.05
30 5 0.02
31 1 0.00
32 3 0.01
33 14 0.04
34 33 0.10
35 8 0.02
36 74 0.22
37 32 0.10
38 57 0.17
39 12 0.04
40 18 0.05
41 26 0.08
42 9 0.03
43 1 0.00
44 8 0.02
46 14 0.04
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.45
Consensus pattern (36 bp):
ATATATATAATATATAGTTTTTAAAACATTTTGAAA
Found at i:51157 original size:82 final size:81
Alignment explanation
Indices: 51041--51353 Score: 301
Period size: 77 Copynumber: 4.0 Consensus size: 81
51031 GATTTTTGAA
*
51041 ATATATATATAATATATAGTTTTTAAAAT-ATTTTGAAAACT-TATATAATATATAGTTTTCAAA
1 ATATATATATAATATATAGTTTTTTAAATCATTTTGAAAACTATATATAATATATAGTTTT-AAA
* *
51104 GCGTTTTGAAAATATAT
65 ACATTTTGAAAATATAT
* *
51121 ATATATATATAACATATAGTTTTTTTAAATCGTTTTGAAAA-TATATATAATATATAGTTTTTAA
1 ATATATATATAATATATAG-TTTTTTAAATCATTTTGAAAACTATATATAATATATAG-TTTTAA
*
51185 ATCATTTTG------TAT
64 AACATTTTGAAAATATAT
* *
51197 ATATATATATAATATATAG-TTTTTAAAACCTTTTGAAAACATGTATATATATATATATAGTATT
1 ATATATATATAATATATAGTTTTTTAAATCATTTTGAAAAC---TATATATA-ATATATAGT-TT
51261 TAAAACATTTTG-----A-A-
61 TAAAACATTTTGAAAATATAT
*
51275 A-ATATATATAATATATAG-TTTTTAAAACATTTTGAAAAC---ATATAATATATAGTTTTAAAA
1 ATATATATATAATATATAGTTTTTTAAATCATTTTGAAAACTATATATAATATATAGTTTTAAAA
51335 CATTTTTGAAAACTATAT
66 CA-TTTTGAAAA-TATAT
51353 A
1 A
51354 ATTTTGAAAA
Statistics
Matches: 203, Mismatches: 10, Indels: 42
0.80 0.04 0.16
Matches are distributed among these distances:
69 9 0.04
70 14 0.07
71 5 0.02
74 18 0.09
76 22 0.11
77 38 0.19
78 11 0.05
79 22 0.11
80 18 0.09
81 10 0.05
82 32 0.16
83 4 0.02
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.45
Consensus pattern (81 bp):
ATATATATATAATATATAGTTTTTTAAATCATTTTGAAAACTATATATAATATATAGTTTTAAAA
CATTTTGAAAATATAT
Found at i:51158 original size:46 final size:43
Alignment explanation
Indices: 51082--51291 Score: 144
Period size: 41 Copynumber: 5.1 Consensus size: 43
51072 TTTGAAAACT
*
51082 TATATAATATATAGTTTTCAAAGCGTTTTGAAAATATATATATA
1 TATATAACATATAGTTTTCAAAGCGTTTTGAAAATATATATA-A
* *
51126 TATATAACATATAGTTTTTTTAAATCGTTTTG-AAA-ATATAT-A
1 TATATAACATATAG--TTTTCAAAGCGTTTTGAAAATATATATAA
* * *
51168 TA-AT---ATATAGTTTTTAAATCATTTTG----TATATAT-A
1 TATATAACATATAGTTTTCAAAGCGTTTTGAAAATATATATAA
* * * * * *
51202 TATATAATATATAGTTTTTAAAACCTTTTGAAAACATGTAT-A
1 TATATAACATATAGTTTTCAAAGCGTTTTGAAAATATATATAA
* * *
51244 TATAT-ATATATAGTATTT-AAAACATTTTGAAAATATATATAA
1 TATATAACATATAGT-TTTCAAAGCGTTTTGAAAATATATATAA
51286 TATATA
1 TATATA
51292 GTTTTTAAAA
Statistics
Matches: 141, Mismatches: 11, Indels: 29
0.78 0.06 0.16
Matches are distributed among these distances:
34 9 0.06
35 2 0.01
36 15 0.11
38 26 0.18
41 30 0.21
42 23 0.16
44 19 0.13
45 3 0.02
46 14 0.10
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (43 bp):
TATATAACATATAGTTTTCAAAGCGTTTTGAAAATATATATAA
Found at i:51318 original size:34 final size:34
Alignment explanation
Indices: 51243--51355 Score: 156
Period size: 34 Copynumber: 3.2 Consensus size: 34
51233 AAACATGTAT
* *
51243 ATATATATATATAGTATTTAAAACATTTTGAAAATAT
1 ATATA-ATATATAGTTTTTAAAACATTTTG-AAA-AC
51280 ATATAATATATAGTTTTTAAAACATTTTGAAAAC
1 ATATAATATATAGTTTTTAAAACATTTTGAAAAC
51314 ATATAATATATAG-TTTTAAAACATTTTTGAAAAC
1 ATATAATATATAGTTTTTAAAACA-TTTTGAAAAC
51348 TATATAAT
1 -ATATAAT
51356 TTTGAAAACA
Statistics
Matches: 72, Mismatches: 2, Indels: 6
0.90 0.03 0.08
Matches are distributed among these distances:
33 10 0.14
34 24 0.33
35 10 0.14
36 23 0.32
37 5 0.07
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.42
Consensus pattern (34 bp):
ATATAATATATAGTTTTTAAAACATTTTGAAAAC
Found at i:51487 original size:23 final size:23
Alignment explanation
Indices: 51447--51507 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
51437 AATATCTTTA
* *
51447 TATTATTATTATTATTATTGTTATT
1 TATTTTTATT-TT-TTATTGTTAGT
* *
51472 TATTTTTATTTTTTATTTTTCGT
1 TATTTTTATTTTTTATTGTTAGT
*
51495 TAATTTTATTTTT
1 TATTTTTATTTTT
51508 ATTTTCATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 20 0.65
24 2 0.06
25 9 0.29
ACGTcount: A:0.21, C:0.02, G:0.03, T:0.74
Consensus pattern (23 bp):
TATTTTTATTTTTTATTGTTAGT
Found at i:52821 original size:29 final size:27
Alignment explanation
Indices: 52757--52822 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 27
52747 TTTATTTTGA
*
52757 TTATATTTTGGTCCTTTACCTTTTGTTT
1 TTATA-TTTGGTCCTTTACCTTTTATTT
52785 TTACTATTTGGATCCTTTACACTTTTATTT
1 TTA-TATTTGG-TCCTTTAC-CTTTTATTT
52815 ATT-TATTT
1 -TTATATTT
52823 ATTATATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
28 8 0.24
29 15 0.45
30 8 0.24
31 2 0.06
ACGTcount: A:0.17, C:0.14, G:0.08, T:0.62
Consensus pattern (27 bp):
TTATATTTGGTCCTTTACCTTTTATTT
Found at i:52832 original size:2 final size:2
Alignment explanation
Indices: 52825--52863 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
52815 ATTTATTTAT
52825 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
52864 TTCTTTTAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:52901 original size:2 final size:2
Alignment explanation
Indices: 52894--52922 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
52884 CTTTCCACAT
52894 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
52923 TTTACATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57734 original size:84 final size:84
Alignment explanation
Indices: 57590--58440 Score: 1033
Period size: 84 Copynumber: 10.1 Consensus size: 84
57580 AAAGCACCTT
* * * *
57590 CAACAAAAGACCTTCGATTTCGATTACACTCAGCTCAAAGACATATCATTTGCATCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
* *
57655 GGTAAGAAGGGCTATCTGC
66 GGCAAGAAGGGTTATCTGC
* *
57674 CAGCAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGAATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
*
57739 GG-AAGGAAGGGTTATATGC
66 GGCAA-GAAGGGTTATCTGC
*
57758 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTACAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
* *
57823 GGCAAAAAGGGTTATCTGT
66 GGCAAGAAGGGTTATCTGC
* * * * *
57842 TAACAAAAGACCTTCGAGTTCGATTACACTCAGCTTAAAGACACATCATTTGAAGCATATCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
57907 GGCAAGAAGGGTTATCTGC
66 GGCAAGAAGGGTTATCTGC
* * * * *
57926 CAACAAAAGACCTTTGAGTTTGATTACACTCAGCTCAAATGCACATCATTTACAACATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
***
57991 GGCAAGAAGAAATATCTGC
66 GGCAAGAAGGGTTATCTGC
* * * * ** * *
58010 CAATAAAAGACCTTTGAGTTTGATTACACTCAGCTCAATGGCGTATCATTTGCAACATAACTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
58075 GGCAAGAAGGGCTT-TCTGC
66 GGCAAGAAGGG-TTATCTGC
** * *
58094 CAATGAAAGACCTTCGAATTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAACTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
* *
58159 GGAAAGAAGGGCTATCTGC
66 GGCAAGAAGGGTTATCTGC
* * *
58178 CAACAAAAGACCTTCGAGTTCGATTACACTCAACTCAGAGGCACGTCATTTGCAGCATAGCTCAA
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
*
58243 GGCAAGAAGGGTTATCTTC
66 GGCAAGAAGGGTTATCTGC
* * ** * *
58262 CAACAAAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTATAGTATAACTC
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC--ATTTGCAGCATAGCTC
* * **
58327 AAAGCGAGAAGGGTTATCTAT
64 AAGGCAAGAAGGGTTATCTGC
* * * * * * * * * *
58348 CATC-AAAGACCTTTGCGTTTGATTACATTCAACTCAGAGGCAAATCAAATTTACAGTATAGCTC
1 CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC--ATTTGCAGCATAGCTC
* * *
58412 AAGGCAATAAGGGTTATTTGT
64 AAGGCAAGAAGGGTTATCTGC
58433 CAACAAAA
1 CAACAAAA
58441 TTGTCGAGTT
Statistics
Matches: 667, Mismatches: 93, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
83 3 0.00
84 555 0.83
85 74 0.11
86 35 0.05
ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24
Consensus pattern (84 bp):
CAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
GGCAAGAAGGGTTATCTGC
Found at i:58982 original size:2 final size:2
Alignment explanation
Indices: 58975--59008 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
58965 AAATTCTTTT
58975 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
59009 GTTTGCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:59074 original size:36 final size:36
Alignment explanation
Indices: 59034--59292 Score: 304
Period size: 36 Copynumber: 7.2 Consensus size: 36
59024 TTGAATTATA
*
59034 TATATAATATATAGTTTTTAAAATATTTTGAAAACT
1 TATATAATATATAGTTTTTAAAACATTTTGAAAACT
* *
59070 TATATAATATATAGTTTTTAAAGCGTTTTGAATATA-T
1 TATATAATATATAGTTTTTAAAACATTTTGAA-A-ACT
*
59107 ATATATAATATATATAGTTTTTAAATCATTTTGAAAA-T
1 -TATAT-A-ATATATAGTTTTTAAAACATTTTGAAAACT
* *
59145 ATATATAATATATAGTTTTTAAAACCTTCTGAAAAC-
1 -TATATAATATATAGTTTTTAAAACATTTTGAAAACT
59181 -ATAT-ATATATAGTTTTTAAAACATTTTGAAAA-T
1 TATATAATATATAGTTTTTAAAACATTTTGAAAACT
59214 ATATATAATATATAGTTTTTAAAACATTTTGAAAAC-
1 -TATATAATATATAGTTTTTAAAACATTTTGAAAACT
*
59250 -ATATAATATATAG-TTTTAAATCATTTTTTGAAAAC-
1 TATATAATATATAGTTTTTAAAACA--TTTTGAAAACT
59285 TATATAAT
1 TATATAAT
59293 TTTGAAAACA
Statistics
Matches: 198, Mismatches: 11, Indels: 28
0.84 0.05 0.12
Matches are distributed among these distances:
33 35 0.18
34 17 0.09
35 14 0.07
36 89 0.45
37 3 0.02
38 14 0.07
39 2 0.01
40 24 0.12
ACGTcount: A:0.44, C:0.05, G:0.06, T:0.45
Consensus pattern (36 bp):
TATATAATATATAGTTTTTAAAACATTTTGAAAACT
Found at i:59194 original size:69 final size:69
Alignment explanation
Indices: 59114--59290 Score: 284
Period size: 69 Copynumber: 2.5 Consensus size: 69
59104 TATATATATA
*
59114 ATATATATAGTTTTTAAATCATTTTGAAAATATATATAATATATAGTTTTTAAAACCTTCTGAAA
1 ATATATATAGTTTTTAAATCATTTTGAAAATATATATAATATATAGTTTTTAAAACATTCTGAAA
59179 ACAT
66 ACAT
* *
59183 ATATATATAGTTTTTAAAACATTTTGAAAATATATATAATATATAGTTTTTAAAACATTTTGAAA
1 ATATATATAGTTTTTAAATCATTTTGAAAATATATATAATATATAGTTTTTAAAACATTCTGAAA
59248 ACAT
66 ACAT
59252 ATAATATATAG-TTTTAAATCATTTTTTGAAAACTATATA
1 AT-ATATATAGTTTTTAAATCA--TTTTGAAAA-TATATA
59291 ATTTTGAAAA
Statistics
Matches: 100, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
69 77 0.77
70 8 0.08
71 9 0.09
72 6 0.06
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.44
Consensus pattern (69 bp):
ATATATATAGTTTTTAAATCATTTTGAAAATATATATAATATATAGTTTTTAAAACATTCTGAAA
ACAT
Found at i:59393 original size:3 final size:3
Alignment explanation
Indices: 59385--59412 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
59375 AATATCTTTA
59385 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
59413 TATTTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:59446 original size:20 final size:22
Alignment explanation
Indices: 59410--59450 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
59400 TATTATTATT
59410 ATTTATTTTTTATTTTTCATTA
1 ATTTATTTTTTATTTTTCATTA
59432 ATTT-TTTTTTA-TTTTCATT
1 ATTTATTTTTTATTTTTCATT
59451 TTATTGTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (22 bp):
ATTTATTTTTTATTTTTCATTA
Found at i:60416 original size:7 final size:7
Alignment explanation
Indices: 60404--60428 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60394 TCTCTCACTC
60404 TCTCTCT
1 TCTCTCT
60411 TCTCTCT
1 TCTCTCT
60418 TCTCTCT
1 TCTCTCT
60425 TCTC
1 TCTC
60429 AAAGTGAAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (7 bp):
TCTCTCT
Found at i:60770 original size:29 final size:28
Alignment explanation
Indices: 60709--60770 Score: 65
Period size: 29 Copynumber: 2.1 Consensus size: 28
60699 ATTTTGATTC
*
60709 TATTTCGGTCCTTTACCTTTTGTTATTA
1 TATTTCGGTCCTTTACCTTTTATTATTA
60737 CTATTT-GGATCCTTTACACTTTTAATTATT-
1 -TATTTCGG-TCCTTTAC-CTTTT-ATTATTA
60767 TATT
1 TATT
60771 ATATATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
28 2 0.07
29 17 0.59
30 5 0.17
31 5 0.17
ACGTcount: A:0.19, C:0.16, G:0.08, T:0.56
Consensus pattern (28 bp):
TATTTCGGTCCTTTACCTTTTATTATTA
Found at i:60777 original size:2 final size:2
Alignment explanation
Indices: 60770--60824 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
60760 AATTATTTAT
60770 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60812 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
60825 TGTCTTTTAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:62490 original size:26 final size:26
Alignment explanation
Indices: 62460--62512 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
62450 GACAAAAGGC
62460 TAGTCTATCATTTTATCTAATGCTCA
1 TAGTCTATCATTTTATCTAATGCTCA
62486 TAGTCTATCATTTTATCTAATGCTCA
1 TAGTCTATCATTTTATCTAATGCTCA
62512 T
1 T
62513 TCTTTTGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.08, T:0.47
Consensus pattern (26 bp):
TAGTCTATCATTTTATCTAATGCTCA
Found at i:62798 original size:11 final size:11
Alignment explanation
Indices: 62782--62806 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
62772 TTCATATATC
62782 TTTTTTACTTT
1 TTTTTTACTTT
62793 TTTTTTACTTT
1 TTTTTTACTTT
62804 TTT
1 TTT
62807 CTTTCTGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTACTTT
Done.