genome.fa.s456.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000456.1 Hibiscus syriacus cultivar Beakdansim tig00000846_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83798

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31--136	23	4.5	24	74	10	85	29	20	21	28	1.98
18--117	47	2.2	46	87	1	146	28	21	24	27	1.99
46--144	23	4.3	23	76	2	99	30	22	24	23	1.99
253--287	15	2.3	15	90	0	52	28	20	14	37	1.91
2181--2368	2	100.5	2	77	20	194	53	2	0	44	1.16
2202--2368	29	6.0	27	83	15	184	51	2	0	45	1.18
4825--4856	16	2.1	15	94	5	55	46	6	12	34	1.67
5275--5327	25	2.1	25	83	13	65	52	18	3	24	1.62
7513--7546	15	2.3	15	89	0	50	38	11	14	35	1.83
9549--9598	18	2.7	18	87	3	64	34	34	14	18	1.90
10370--10427	20	2.6	22	89	10	84	25	22	20	31	1.98
10415--10556	64	2.2	63	81	7	162	26	22	17	33	1.96
10868--10900	17	1.9	17	88	11	50	12	30	0	57	1.35
11993--12198	65	3.2	64	79	10	204	32	23	17	26	1.97
17968--18131	23	7.4	21	75	12	107	27	26	22	23	2.00
17968--18034	21	3.2	20	79	10	64	32	26	19	20	1.97
17987--18135	23	6.6	23	83	6	180	26	26	24	23	2.00
20405--20489	34	2.6	34	92	3	138	37	0	31	30	1.58
20918--21021	45	2.3	45	88	5	147	28	21	20	29	1.98
23305--23372	33	2.1	33	100	0	136	29	14	8	47	1.75
25590--25625	18	1.9	19	88	5	56	30	16	25	27	1.97
25796--25837	20	2.1	20	82	8	50	42	2	9	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27672--28238	30	18.9	30	80	3	408	27	14	28	29	1.95
31808--31854	2	23.5	2	100	0	94	48	0	0	51	1.00
34823--34862	21	1.9	21	89	0	62	2	25	20	52	1.59
43493--43588	40	2.3	42	84	8	126	35	14	17	32	1.90
47990--48093	46	2.3	45	80	12	131	41	16	10	31	1.82
63515--63557	17	2.5	18	81	11	54	32	25	27	13	1.94
63619--63669	22	2.3	23	80	13	61	49	23	3	23	1.67
73626--73688	22	2.9	22	87	0	90	36	28	11	23	1.89
77306--77672	132	2.8	131	85	3	488	40	16	10	33	1.81
78298--78346	2	25.5	2	91	8	84	53	0	0	46	1.00
78297--78353	12	4.5	13	87	10	82	54	0	1	43	1.10
79269--79306	19	2.0	20	84	5	51	0	7	13	78	0.94
80187--80984	243	3.3	241	85	3	1014	33	16	17	32	1.92

Tables:   1

The End!