Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004561.1 Hibiscus syriacus cultivar Beakdansim tig00010137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63077

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
384--416
13
2.5
14
85
14
52
42
9
6
42
1.61
4393--4421
2
14.5
2
100
0
58
51
0
0
48
1.00
4993--5521
46
11.6
46
82
1
614
21
21
14
42
1.88
6003--6050
18
2.5
19
83
12
55
29
22
10
37
1.88
7858--7909
27
2.0
27
85
7
72
59
5
7
26
1.48
11257--11498
2
125.5
2
75
16
190
50
3
1
44
1.27
11264--11323
11
4.8
12
78
17
52
56
5
0
38
1.21
11527--11596
14
4.8
15
75
20
60
55
4
1
38
1.28
18721--18769
11
4.7
11
75
14
50
0
10
12
77
0.99
18722--18765
19
2.3
19
81
14
54
0
11
11
77
1.00
23421--23475
3
18.7
3
89
10
87
32
0
0
67
0.91
24844--24889
23
2.2
20
84
11
56
26
0
0
73
0.83
25045--25099
27
2.0
27
89
0
83
47
0
0
52
1.00
36185--36240
11
4.9
12
81
18
75
83
0
16
0
0.64
36185--36241
23
2.4
25
88
8
84
84
0
15
0
0.63
36182--36241
12
5.4
11
80
11
77
85
0
15
0
0.61
37060--37908
93
9.1
93
93
0
1369
27
17
20
34
1.95
38684--39132
113
4.0
113
92
0
677
36
15
18
29
1.91
39110--39316
105
2.0
103
83
7
258
40
17
16
25
1.90
39461--39518
3
19.7
3
89
10
93
32
0
0
67
0.91
41092--41145
27
2.0
27
89
3
83
48
0
0
51
1.00
53867--53921
24
2.2
24
90
3
83
25
14
23
36
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54333--54485
81
1.9
78
81
9
184
41
8
5
45
1.57
59528--59581
20
2.7
20
77
13
65
40
3
3
51
1.37
59612--59671
16
3.4
18
82
13
79
43
10
1
45
1.47

Tables:   1

The End!