Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004563.1 Hibiscus syriacus cultivar Beakdansim tig00010141_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86838

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
497--555
21
2.8
22
70
10
61
54
6
6
32
1.53
1752--1792
21
1.9
22
95
5
75
24
19
19
36
1.95
5537--5570
16
2.1
16
89
10
52
58
20
0
20
1.39
8256--8290
18
2.0
18
88
5
54
28
2
0
68
1.04
12771--12803
14
2.4
14
94
0
57
21
6
15
57
1.59
15127--15181
21
2.6
21
100
0
110
29
30
18
21
1.97
18965--18994
15
2.0
15
100
0
60
46
26
20
6
1.75
19538--19596
31
1.9
31
86
6
84
50
1
6
40
1.39
20629--20673
2
22.5
2
100
0
90
51
0
0
48
1.00
20772--20803
3
11.3
3
87
12
50
71
0
0
28
0.86
20770--20803
14
2.4
14
100
0
68
73
0
0
26
0.83
20767--20799
17
2.0
16
94
5
57
72
0
0
27
0.85
20781--20873
43
2.2
43
81
14
113
67
3
5
23
1.26
21031--21115
34
2.5
34
98
0
161
24
17
22
35
1.95
21275--21385
43
2.6
43
86
0
159
23
16
31
28
1.96
22388--22420
17
1.9
17
88
11
50
0
12
3
84
0.72
22388--22424
6
6.3
6
85
14
51
0
13
2
83
0.74
24571--24603
15
2.1
16
88
5
50
36
9
6
48
1.60
25103--25896
416
1.9
415
83
4
1039
39
9
8
42
1.69
36588--36630
12
3.6
11
81
12
50
69
0
11
18
1.17
37556--37600
20
2.2
20
88
7
65
77
6
4
11
1.09
41028--41069
22
2.0
21
90
4
66
23
0
7
69
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61544--61582
17
2.3
17
86
0
51
41
7
17
33
1.79
61589--61685
17
5.6
18
71
11
67
45
14
11
28
1.79
61589--61685
34
2.8
35
81
9
108
45
14
11
28
1.79
65696--65756
30
2.0
30
93
0
104
31
21
16
31
1.95
67363--67406
18
2.4
18
81
7
54
77
2
2
18
0.98
67363--67420
29
2.0
29
80
12
66
75
3
3
17
1.07
68587--68660
37
1.9
38
86
5
105
17
12
22
47
1.81
70277--70495
123
1.8
122
85
9
317
41
5
5
47
1.50
73972--74000
4
7.2
4
100
0
58
75
0
0
24
0.80
79070--79103
17
1.9
17
88
5
50
41
5
2
50
1.42

Tables:   1

The End!