genome.fa.s4564.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004564.1 Hibiscus syriacus cultivar Beakdansim tig00010143_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106544

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590--791	58	3.6	57	78	9	182	46	5	5	42	1.51
705--827	57	2.2	55	79	11	117	44	9	3	42	1.53
589--823	115	2.0	116	80	8	266	45	5	5	42	1.51
828--979	56	2.7	58	81	7	186	44	9	7	38	1.67
1161--1324	45	3.6	45	81	4	179	42	17	6	34	1.75
7223--7259	2	18.5	2	100	0	74	48	0	0	51	1.00
11389--11442	20	2.7	20	91	0	90	5	12	20	61	1.52
13084--13141	21	2.8	21	76	10	64	34	22	20	22	1.97
13129--13402	20	13.6	20	70	10	119	37	22	18	20	1.94
13190--13400	40	5.2	41	84	1	275	37	23	18	20	1.94
13190--13400	60	3.5	60	78	8	214	37	23	18	20	1.94
13190--13402	20	10.6	19	75	10	160	37	23	19	20	1.95
13987--14031	19	2.4	19	88	7	65	48	22	17	11	1.78
13953--14018	33	2.0	34	87	3	98	45	22	21	10	1.82
14027--14178	20	8.1	19	80	10	152	13	22	19	44	1.85
17324--17377	20	2.8	20	91	2	92	46	18	22	12	1.83
17414--17472	21	2.9	21	82	7	77	11	20	16	50	1.76
18031--18252	20	10.6	20	78	12	194	18	18	25	37	1.94
18106--18275	41	4.2	40	87	4	218	19	18	24	37	1.94
18037--18171	69	2.0	69	86	1	191	19	18	23	38	1.93
18106--18252	41	3.6	40	91	0	222	18	18	24	38	1.93
18106--18275	61	2.8	60	79	7	157	19	18	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18261--18309	20	2.5	20	83	6	64	12	18	24	44	1.84
18295--18415	63	2.0	60	83	4	152	22	19	21	36	1.95
19144--19173	2	15.0	2	92	0	51	53	0	0	46	1.00
21991--22022	16	2.0	16	93	0	55	56	3	0	40	1.15
25341--25368	2	14.0	2	100	0	56	50	0	0	50	1.00
26142--26173	15	2.2	15	94	5	57	71	0	0	28	0.86
28227--28515	138	2.1	139	86	4	406	25	17	27	29	1.97
28227--28563	138	2.4	138	80	5	378	25	17	28	29	1.97
28997--29238	67	3.6	66	79	7	229	40	11	16	31	1.85
36124--36192	31	2.3	30	83	14	88	7	14	4	73	1.20
36657--36726	30	2.4	30	90	2	106	7	12	34	45	1.70
36791--36837	3	15.7	3	100	0	94	68	0	0	31	0.90
41381--41424	16	2.7	16	86	10	54	22	0	2	75	0.92
41381--41424	17	2.7	15	83	16	52	22	0	2	75	0.92
56410--56455	20	2.3	20	92	0	74	10	26	26	36	1.89
59232--59270	21	1.9	20	84	5	51	41	5	23	30	1.76
63316--63353	17	2.2	18	90	4	60	36	2	0	60	1.11
63325--63385	26	2.4	25	78	8	77	39	0	0	60	0.97
64323--64357	18	1.9	18	88	0	52	74	5	0	20	1.02
68002--68264	76	3.5	75	78	8	281	30	14	14	40	1.86
68066--68180	36	3.1	36	71	9	113	30	13	13	41	1.84
68002--68232	76	3.1	74	80	6	295	29	15	14	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68237--68576	39	8.7	39	90	2	486	30	16	15	37	1.90
68555--68735	36	4.9	35	68	10	119	29	19	12	37	1.89
68528--68735	75	2.8	75	86	2	269	31	18	13	36	1.89
68675--68795	61	2.0	61	83	3	154	31	22	11	34	1.90
69700--69735	18	2.1	18	89	5	56	33	22	16	27	1.95
77768--77792	2	12.5	2	100	0	50	52	0	0	48	1.00
78332--78442	56	2.0	56	83	5	143	28	22	19	28	1.98
80792--80833	21	2.0	21	86	4	59	11	2	7	78	1.04
82716--82803	27	3.3	27	91	0	149	46	35	7	10	1.67
83277--83336	31	2.1	30	84	12	81	36	6	1	55	1.36
86577--86605	13	2.2	13	100	0	58	6	24	20	48	1.74
89786--89826	22	1.9	21	85	5	55	21	24	21	31	1.98
95227--95295	3	23.7	3	94	5	124	34	0	0	65	0.93
99337--99448	38	3.0	38	88	2	165	33	18	11	35	1.87
102223--102288	23	2.9	23	88	2	89	34	9	24	31	1.87
102630--102673	13	3.3	14	84	9	56	52	2	0	45	1.13
102630--102673	7	6.6	7	79	10	56	52	2	0	45	1.13
102630--102673	20	2.2	20	91	0	70	52	2	0	45	1.13
103149--103198	26	1.9	26	87	0	73	46	0	4	50	1.20
103191--103230	18	2.3	18	87	12	57	60	0	7	32	1.25

Tables:   1

The End!