genome.fa.s4567.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004567.1 Hibiscus syriacus cultivar Beakdansim tig00010152_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70474

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2337--2447	56	2.0	56	83	5	143	28	22	19	28	1.98
4565--4663	51	1.9	50	80	15	114	19	11	9	60	1.56
4822--4851	15	1.9	16	93	6	53	16	0	3	80	0.85
4774--4846	36	2.1	36	82	12	89	12	4	8	75	1.17
6735--6817	27	3.1	27	91	0	139	48	33	7	10	1.66
7051--7102	15	3.2	16	76	15	54	42	0	0	57	0.98
7290--7349	31	2.1	30	84	12	81	36	6	1	55	1.36
10592--10618	13	2.1	13	100	0	54	7	22	22	48	1.75
13797--13837	22	1.9	21	85	5	55	21	24	21	31	1.98
19302--19426	15	7.9	15	68	24	71	73	0	3	22	1.02
19308--19383	22	3.5	22	82	7	84	73	1	1	23	0.98
19298--19367	6	11.5	6	76	14	54	74	1	0	24	0.90
19308--19421	10	11.9	9	73	16	88	71	0	3	23	1.06
20409--20448	18	2.2	18	86	4	53	55	2	0	42	1.13
21220--21412	104	1.9	104	89	0	305	24	15	23	36	1.94
21461--22565	106	10.3	106	92	2	1787	22	17	24	34	1.96
22334--22367	12	2.8	12	95	0	59	26	8	26	38	1.85
22122--22565	224	2.0	224	97	0	834	23	17	24	34	1.96
23780--23839	32	1.9	31	83	10	77	1	11	6	80	0.98
25015--25065	27	1.9	26	84	11	68	49	5	15	29	1.68
26769--26847	16	4.9	15	71	21	63	72	1	2	24	1.05
26766--26848	20	4.4	18	73	14	62	73	1	2	22	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26793--26850	22	2.6	22	83	2	71	72	1	1	24	1.03
26786--26889	19	5.2	20	77	11	81	70	0	6	22	1.17
26828--26888	20	3.2	19	71	19	56	70	0	9	19	1.15
27872--27911	18	2.2	18	86	4	53	55	2	0	42	1.13
28239--28309	3	23.7	3	100	0	142	33	0	0	66	0.92
32390--32503	38	3.0	38	88	0	165	34	18	11	35	1.87
35314--35380	23	2.9	23	90	0	98	35	8	23	31	1.86
35731--35768	20	1.9	20	94	0	67	50	2	2	44	1.30
36281--36323	20	2.2	20	87	8	61	53	4	16	25	1.62
39489--39537	20	2.5	20	82	0	53	18	36	24	20	1.94
39504--39560	20	2.8	20	86	5	80	17	38	26	17	1.92
40369--40438	34	2.1	34	81	10	81	54	5	1	38	1.33
40413--40532	64	1.9	63	86	5	170	46	5	5	42	1.49
41203--41236	17	2.0	17	88	11	52	26	2	0	70	1.01
43974--44026	2	28.5	2	78	14	51	43	0	1	54	1.11
43975--44022	18	2.7	18	96	0	87	43	0	2	54	1.12
43974--44029	18	2.9	19	86	7	78	42	0	1	55	1.10
48742--48775	17	2.1	16	88	5	50	14	20	5	58	1.57
57642--57693	22	2.4	22	100	0	104	26	25	9	38	1.86
64929--65039	20	5.6	20	87	4	109	31	19	20	27	1.97
65840--65893	24	2.2	24	90	0	81	22	18	18	40	1.91
66080--66116	14	2.6	14	91	4	56	51	21	21	5	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68236--68507	138	2.0	138	94	1	474	27	13	15	42	1.86
68478--68767	20	15.8	20	71	16	207	34	21	17	26	1.95
68506--68600	33	2.8	34	87	1	129	36	20	15	27	1.93
68539--68676	54	2.6	54	83	0	177	35	23	16	24	1.95
68627--68818	54	3.5	54	83	5	206	31	22	20	25	1.98
68808--68865	20	2.9	21	82	10	77	12	17	27	43	1.84
70375--70466	42	2.2	42	82	3	105	21	16	35	26	1.94

Tables:   1

The End!