genome.fa.s457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000457.1 Hibiscus syriacus cultivar Beakdansim tig00000847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84081

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9128--9659	55	9.7	55	90	0	807	27	15	28	28	1.96
18197--18224	3	9.3	3	100	0	56	67	0	0	32	0.91
18556--18596	15	2.7	15	84	3	55	56	19	12	12	1.67
19392--19439	24	2.0	24	91	0	78	54	25	12	8	1.65
22131--22262	60	2.2	59	82	4	149	31	17	16	34	1.92
27733--27778	19	2.4	19	100	0	92	32	26	0	41	1.56
29029--29068	16	2.5	16	100	0	80	52	0	20	27	1.46
29810--29847	20	1.9	20	94	0	67	31	15	34	18	1.92
29810--29861	20	2.6	20	84	6	61	34	15	30	19	1.93
30388--30949	58	9.7	58	92	0	881	32	12	20	34	1.90
34315--34339	13	1.9	13	100	0	50	52	8	0	40	1.31
41997--42044	2	24.0	2	100	0	96	50	0	0	50	1.00
47781--47896	60	1.9	60	84	6	155	48	5	19	26	1.70
48305--48332	14	2.0	14	100	0	56	50	7	0	42	1.30
48599--48639	21	2.0	21	85	0	55	2	24	17	56	1.53
48599--48631	11	3.1	11	91	4	50	3	27	15	54	1.55
58454--58482	3	9.7	3	100	0	58	0	31	0	68	0.89
60120--60150	15	2.0	16	93	6	55	41	6	12	38	1.69
60765--60811	13	3.4	14	82	11	53	38	4	27	29	1.76
67284--67358	24	3.2	24	63	21	59	37	8	22	32	1.83
67282--67461	46	3.9	46	90	3	283	38	6	22	32	1.80
75124--75277	51	3.0	51	98	0	290	24	46	12	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76207--76867	181	3.7	181	86	5	862	41	14	17	27	1.87
78817--78872	24	2.4	23	80	8	69	46	0	1	51	1.11
79258--79300	21	2.0	21	90	0	68	39	11	34	13	1.82
79335--79401	33	2.0	33	97	0	125	29	0	47	22	1.51
81152--81198	19	2.5	19	96	0	85	31	2	10	55	1.46
81720--81748	12	2.3	13	94	5	51	44	20	17	17	1.86
81551--82456	198	4.5	203	79	9	926	37	14	16	31	1.88
81551--82456	393	2.3	391	80	9	1024	37	14	16	31	1.88

Tables:   1

The End!