genome.fa.s4570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004570.1 Hibiscus syriacus cultivar Beakdansim tig00010156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127123

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664--715	19	2.8	19	82	2	70	15	3	7	73	1.21
821--869	2	25.0	2	95	4	91	51	0	0	48	1.00
2804--2864	16	3.0	21	71	26	60	36	3	4	55	1.38
5166--5203	17	2.2	17	90	4	58	21	2	7	68	1.28
10916--11162	80	3.1	78	87	7	368	34	25	8	31	1.86
10895--11172	84	3.4	84	86	7	415	34	25	7	31	1.85
16433--16472	21	1.9	21	84	0	53	50	7	2	40	1.44
18386--18492	34	3.1	33	78	14	85	34	0	3	61	1.14
18419--18497	34	2.4	34	85	8	101	37	0	1	60	1.05
18638--18691	17	3.2	17	72	0	54	31	0	3	64	1.11
20222--20269	21	2.3	21	85	0	60	25	39	12	22	1.89
20273--20366	21	4.5	21	84	7	111	20	35	24	20	1.96
20889--20966	39	2.0	39	80	12	88	60	5	0	34	1.19
20889--20985	33	2.9	34	82	3	115	56	5	2	36	1.33
20887--20992	34	3.2	32	80	8	113	55	5	1	36	1.34
21384--22268	128	6.9	128	94	1	1558	32	20	24	22	1.98
22339--22379	8	5.2	8	82	5	57	36	29	0	34	1.58
26191--26259	32	2.2	32	97	0	129	33	17	17	31	1.93
26766--26838	36	2.0	36	97	0	137	39	10	12	36	1.78
27228--27287	31	1.9	31	86	0	84	30	11	11	46	1.76
27674--27734	25	2.6	23	80	16	72	36	1	1	60	1.16
27738--27767	10	3.0	10	95	0	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27834--27894	31	2.0	31	83	6	79	34	6	0	59	1.24
28031--28113	27	3.2	27	80	11	93	54	0	3	42	1.18
28033--28092	25	2.3	26	88	5	86	55	0	3	41	1.16
35471--36180	4	180.2	4	94	4	1266	49	25	0	25	1.52
38830--38880	17	3.0	17	76	23	54	62	1	3	31	1.24
42486--42559	21	3.5	21	79	0	85	33	16	16	33	1.91
44571--44609	18	2.2	17	95	4	69	51	0	0	48	1.00
51283--51349	31	2.2	31	88	0	98	50	10	8	29	1.67
55089--55203	46	2.5	46	84	1	142	16	13	26	42	1.86
55722--55796	16	4.8	16	79	8	82	5	13	29	52	1.62
57983--58087	27	4.2	25	75	20	96	44	0	0	53	1.13
58003--58080	25	3.0	26	80	14	90	42	1	0	56	1.07
57983--58072	27	3.4	27	78	17	100	44	1	1	53	1.15
58055--58109	19	2.8	20	81	13	69	41	0	1	56	1.10
57983--58096	52	2.2	53	81	12	130	43	0	0	54	1.12
58114--58254	58	2.4	59	74	11	130	55	1	5	37	1.33
58103--58313	27	7.2	29	71	14	105	53	1	5	39	1.34
58185--58262	32	2.4	32	86	2	102	52	1	5	41	1.32
58273--58348	27	2.8	27	80	13	93	52	2	2	42	1.29
58273--58338	25	2.5	26	85	9	73	53	1	3	42	1.25
60833--60878	20	2.3	20	92	0	74	21	26	0	52	1.47
61393--61452	20	2.9	21	87	7	86	16	26	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65741--65806	20	3.3	20	97	0	123	18	30	3	48	1.63
66319--66419	22	4.7	22	95	3	179	20	27	23	27	1.99
72492--72543	2	26.5	2	88	11	81	48	1	0	50	1.12
76735--76809	29	2.5	28	79	10	87	49	4	26	20	1.66
79493--79626	32	4.2	32	83	0	169	31	7	22	38	1.82
86292--86322	2	15.5	2	100	0	62	48	0	0	51	1.00
90439--90486	23	2.1	23	100	0	96	20	20	18	39	1.92
92216--92365	78	1.9	79	91	1	248	46	4	7	42	1.52
92390--92427	14	2.8	13	84	7	58	42	5	0	52	1.24
92492--92541	22	2.3	21	83	12	66	40	0	8	52	1.31
92499--92547	22	2.2	23	96	3	91	36	0	8	55	1.30
95965--96008	24	1.9	22	86	9	61	45	0	2	52	1.13
95931--96012	31	2.6	32	75	18	82	42	0	4	52	1.23
96012--96083	27	2.7	26	77	12	74	50	1	1	47	1.18
96136--96215	29	2.6	32	77	16	89	47	0	2	50	1.14
96175--96238	23	2.7	23	79	18	60	46	1	1	50	1.20
96435--96529	42	2.3	42	88	0	145	48	12	15	23	1.79
97501--97561	16	3.8	16	86	0	95	59	19	13	8	1.59
99110--99141	14	2.3	14	94	0	55	53	21	15	9	1.70
100376--100578	21	9.7	21	74	15	170	21	19	22	35	1.96
100397--100578	42	4.3	41	95	0	292	21	19	22	35	1.96
100397--100575	84	2.1	84	96	0	331	21	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101161--101188	6	4.7	6	100	0	56	0	14	50	35	1.43
101285--101356	21	3.4	21	74	14	85	37	22	19	20	1.94
101382--101421	21	1.9	21	84	0	53	35	25	25	15	1.94
101281--101415	42	3.3	42	91	2	220	35	24	20	20	1.96
101478--101526	21	2.3	21	85	0	62	32	26	20	20	1.97
101378--101556	90	2.0	90	80	8	204	34	19	22	23	1.96
101388--101683	111	2.7	111	95	0	520	31	20	23	23	1.98
101589--101643	21	2.6	21	94	0	92	30	27	21	20	1.98
101499--101666	90	1.9	89	81	9	207	31	20	23	24	1.98
102853--102886	6	6.0	6	90	10	54	17	29	35	17	1.93
102853--102886	11	3.0	11	91	8	59	17	29	35	17	1.93
105647--105725	38	2.1	38	82	0	95	49	0	1	49	1.09
106075--106115	19	2.2	19	90	0	64	17	2	2	78	0.98
106464--106602	56	2.5	56	80	3	172	31	17	6	44	1.74
107330--107422	30	3.1	31	83	6	104	40	0	0	59	0.98
107378--107441	28	2.2	30	81	13	80	34	1	3	60	1.22
108496--108531	17	2.1	17	90	10	56	41	0	5	52	1.24
109088--109190	42	2.5	41	83	3	125	22	35	20	21	1.96
109743--110107	139	2.6	138	85	5	490	33	19	19	27	1.96
111870--111894	6	4.2	6	100	0	50	20	16	64	0	1.30
112005--112142	2	72.0	2	79	8	144	51	0	0	48	1.00
115215--115708	228	2.2	228	96	1	911	45	7	7	39	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115987--116033	20	2.4	19	89	10	76	55	10	17	17	1.69
115784--116246	180	2.6	181	90	3	709	42	13	16	26	1.86
118425--118468	21	2.1	21	91	0	70	40	11	31	15	1.83
118500--118565	33	2.0	33	90	0	105	28	0	48	22	1.51
120344--120382	18	2.1	19	95	4	71	33	2	10	53	1.48
120507--121072	198	2.9	198	94	2	993	36	14	17	30	1.90
122116--122182	22	3.0	22	100	0	134	26	26	26	19	1.99
122468--122536	28	2.4	29	90	2	104	39	13	11	36	1.80
122848--122981	68	2.0	67	83	9	168	19	29	25	26	1.99
122961--123003	21	2.0	21	86	0	59	16	25	27	30	1.97

Tables:   1

The End!