genome.fa.s4571.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004571.1 Hibiscus syriacus cultivar Beakdansim tig00010157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157003

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6559--6635	39	2.0	39	92	0	127	24	31	19	24	1.98
27855--27923	34	2.0	36	91	5	115	39	8	13	39	1.75
32199--32249	17	3.0	17	94	0	84	31	25	5	37	1.80
34261--34290	2	15.0	2	100	0	60	50	0	0	50	1.00
34929--34973	21	2.1	21	84	15	58	51	8	8	31	1.64
39679--39748	35	2.0	35	97	0	131	40	18	10	31	1.84
40271--40301	16	1.9	16	93	0	53	29	12	16	41	1.85
41354--41400	25	1.9	24	95	4	85	44	4	12	38	1.62
42194--42239	19	2.5	19	86	6	60	71	13	2	13	1.23
42559--42588	13	2.3	13	100	0	60	33	6	13	46	1.69
47579--47609	14	2.3	14	94	5	55	54	19	0	25	1.44
54158--54308	6	25.2	6	100	0	302	33	0	16	50	1.46
59497--59528	2	16.0	2	93	0	55	46	0	3	50	1.17
60537--60577	18	2.3	18	86	0	55	36	2	0	60	1.10
61189--61331	60	2.4	60	78	5	146	32	14	15	37	1.88
66105--66144	21	1.9	21	94	0	71	17	5	7	70	1.30
66166--66208	21	2.0	21	95	0	77	55	0	0	44	0.99
67779--67804	9	2.9	9	100	0	52	42	0	0	57	0.98
68797--68870	35	2.1	36	90	5	116	37	6	32	22	1.81
68925--69005	13	6.2	13	72	17	51	53	0	1	45	1.08
68941--69016	40	1.9	40	88	0	116	52	0	1	46	1.08
70323--70350	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70299--70349	16	3.2	16	88	0	66	47	7	3	41	1.51
71566--71648	36	2.3	38	82	14	104	50	0	0	49	1.00
71555--71648	42	2.3	42	90	3	147	50	0	0	50	1.00
77469--77551	36	2.3	36	93	0	139	30	14	40	14	1.86
77610--77651	2	21.5	2	95	4	77	50	0	0	50	1.00
77610--77656	8	6.3	7	95	4	51	51	0	0	48	1.00
79673--79731	22	2.6	22	81	2	64	30	20	11	37	1.89
80912--80954	2	21.5	2	100	0	86	48	0	0	51	1.00
83045--83083	2	19.5	2	94	0	69	46	0	2	51	1.14
86957--87003	12	3.9	12	85	0	58	34	36	10	19	1.86
86953--87010	24	2.4	24	83	11	82	32	34	10	22	1.88
103058--103095	18	2.1	18	95	0	67	31	7	28	31	1.86
105551--105615	28	2.4	28	94	2	114	16	6	30	46	1.72
106354--106567	104	2.1	104	100	0	428	21	23	17	37	1.93
106801--106833	17	1.9	17	100	0	66	24	21	42	12	1.86
115277--115323	16	2.9	16	80	3	58	40	4	0	55	1.19
115683--115818	21	6.6	21	84	1	141	22	17	25	33	1.96
115725--115970	20	12.4	20	72	14	120	17	21	23	37	1.94
115704--115954	41	6.3	41	73	11	161	19	20	24	36	1.95
115682--115838	82	1.9	82	94	0	278	21	18	25	35	1.96
115823--115901	22	3.7	21	73	13	81	17	21	25	35	1.95
115852--115919	19	3.4	19	73	11	73	19	20	22	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115682--115882	82	2.5	82	85	4	255	20	18	24	35	1.96
116107--116149	6	7.5	6	94	2	63	0	16	55	27	1.41
116247--116339	22	4.4	22	74	9	95	36	24	18	20	1.95
117751--117800	21	2.5	19	77	6	55	36	24	20	20	1.95
117754--117890	20	6.8	20	79	4	105	40	21	20	16	1.91
122899--122927	5	5.8	5	100	0	58	82	0	17	0	0.66
131044--131085	14	3.1	14	96	3	77	33	30	7	28	1.84
132097--132172	35	2.2	35	92	0	125	39	23	1	35	1.63
132622--132681	23	2.7	23	94	2	104	28	20	23	28	1.99
133167--133229	28	2.3	27	78	8	63	46	1	3	49	1.27
133309--133342	16	2.0	18	88	11	54	64	5	2	26	1.30
134485--134714	60	3.8	59	81	5	232	31	21	4	42	1.72
136807--136870	30	2.1	30	94	0	110	29	9	21	39	1.85
138393--138433	20	2.0	20	95	0	73	21	7	31	39	1.81
139887--139967	40	2.0	40	82	0	99	33	19	4	41	1.73
140126--140262	60	2.3	59	80	8	143	42	5	20	31	1.76
140163--140307	60	2.4	60	75	14	145	42	6	17	32	1.76
141123--141162	21	1.9	21	94	0	71	40	12	0	47	1.41
141415--141507	2	46.5	2	100	0	186	50	0	0	49	1.00
144539--144592	18	3.1	17	81	7	63	29	3	3	62	1.29
145549--145629	17	4.7	18	75	13	71	48	11	7	33	1.67
145558--145628	17	4.2	17	78	5	72	47	12	7	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145557--145647	35	2.6	35	84	1	103	49	10	7	31	1.66
145569--145652	35	2.4	35	85	0	105	47	9	8	34	1.66
153984--154012	14	2.0	15	93	6	51	75	24	0	0	0.80
154560--154585	2	13.0	2	100	0	52	50	0	0	50	1.00
154863--154891	15	1.9	15	100	0	58	27	31	6	34	1.83
155673--155783	38	3.0	37	77	9	102	43	1	18	36	1.61

Tables:   1

The End!