genome.fa.s4572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004572.1 Hibiscus syriacus cultivar Beakdansim tig00010175_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81599

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3557--3611	13	4.3	13	75	9	51	34	0	1	63	1.05
3632--3665	2	18.0	2	88	11	54	50	0	0	50	1.00
3628--3662	11	3.3	11	92	4	54	54	0	0	45	0.99
3627--3665	13	3.0	13	92	0	60	53	0	0	46	1.00
3632--3663	11	2.9	11	95	0	55	50	0	0	50	1.00
3632--3666	13	2.7	13	95	0	61	48	0	0	51	1.00
3833--3894	25	2.6	24	80	16	67	45	0	0	54	0.99
3842--3894	25	2.2	24	89	3	79	47	0	0	52	1.00
14223--14859	113	5.7	112	93	0	979	38	14	18	28	1.90
16303--16335	16	2.1	16	88	11	50	39	0	0	60	0.97
16341--16374	17	2.0	17	88	11	52	29	5	0	64	1.17
16380--16415	4	8.8	4	87	6	54	72	0	0	27	0.85
16384--16434	8	6.2	8	88	4	57	62	0	0	37	0.95
16615--16669	27	2.0	27	86	6	76	49	0	0	50	1.00
24741--24881	33	4.5	31	76	14	130	37	0	4	56	1.26
24758--24939	18	10.1	17	76	17	138	36	3	4	54	1.38
24763--24878	29	3.9	29	83	13	130	39	0	5	54	1.29
24773--24881	11	10.4	10	70	20	57	39	0	4	55	1.27
29939--30043	37	2.8	37	85	0	138	41	14	14	29	1.85
30401--30443	18	2.5	17	85	7	61	25	4	2	67	1.22
34879--35232	183	1.9	183	94	1	620	27	20	20	31	1.98
36388--36501	36	3.2	35	70	9	104	25	16	13	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36372--36546	72	2.4	75	85	8	227	26	18	12	42	1.86
36640--36718	39	2.0	39	85	4	106	29	21	11	37	1.88
36617--36934	104	3.1	103	91	2	496	30	20	11	36	1.89
36834--36909	36	2.1	36	92	0	125	22	22	15	39	1.92
37078--37634	105	5.3	105	87	4	723	34	25	17	22	1.96
38177--38273	37	2.6	37	85	0	131	42	15	12	29	1.84
38639--38678	18	2.3	18	83	8	57	25	5	2	67	1.23
41148--41183	17	2.1	17	94	0	63	50	5	25	19	1.69
43955--44005	17	3.0	17	97	0	93	23	27	17	31	1.97
45313--45352	19	2.1	19	90	0	62	30	20	32	17	1.95
58409--58473	2	33.0	2	96	3	123	49	0	0	50	1.00
59726--59773	20	2.5	19	83	12	62	22	6	6	64	1.39
59726--59774	19	2.6	18	83	9	53	24	6	6	63	1.41
73132--73252	59	2.1	59	88	0	179	33	23	18	25	1.97
77593--77713	59	2.1	59	93	0	206	33	23	17	25	1.96
78616--78681	27	2.4	27	94	2	114	25	13	15	45	1.83

Tables:   1

The End!