genome.fa.s4573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004573.1 Hibiscus syriacus cultivar Beakdansim tig00010181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147978

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12414--12492	38	2.1	38	95	0	140	22	16	18	41	1.90
26339--26382	8	5.4	8	84	12	54	9	2	2	86	0.75
26344--26382	9	4.4	9	83	6	53	7	2	2	87	0.73
26339--26382	17	2.6	17	89	3	63	9	2	2	86	0.75
36438--36482	16	2.6	17	82	6	56	40	4	28	26	1.75
37078--37138	27	2.2	27	85	2	77	45	32	6	14	1.71
38929--39237	54	5.7	54	72	6	194	25	21	18	35	1.95
41722--41765	23	1.9	23	90	0	70	38	9	18	34	1.82
41689--42081	87	4.5	87	90	1	572	44	11	11	32	1.77
41889--41939	23	2.2	23	92	0	84	37	7	21	33	1.82
41976--42023	23	2.1	23	88	0	69	45	8	10	35	1.68
42599--42651	24	2.3	23	81	12	65	50	3	0	45	1.19
42654--43089	199	2.2	198	88	3	644	30	15	13	40	1.86
43190--43271	30	2.7	30	80	12	80	47	1	1	50	1.16
44477--44507	13	2.4	13	100	0	62	38	6	6	48	1.55
46277--46306	15	2.0	15	93	0	51	43	20	10	26	1.83
48863--49249	194	2.0	191	95	4	706	39	21	17	21	1.93
51827--51861	18	2.0	17	94	5	61	34	8	11	45	1.71
51963--52032	33	2.1	33	89	5	106	41	10	7	41	1.66
52500--52620	62	1.9	61	86	8	172	28	4	19	47	1.69
55017--55255	5	47.4	5	67	22	101	54	3	2	39	1.29
55018--55254	2	129.5	2	65	25	80	54	3	2	40	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55068--55249	98	1.8	100	82	11	241	54	2	1	40	1.24
55128--55296	77	2.1	77	80	14	184	55	2	1	40	1.23
55329--55380	16	3.3	15	83	5	50	53	1	1	42	1.23
55079--55380	39	8.0	36	67	22	117	52	3	2	41	1.31
56563--56863	148	2.0	147	96	1	550	35	20	16	27	1.94
57341--57490	66	2.2	66	86	2	201	16	26	26	31	1.96
63557--63860	149	2.0	149	98	0	581	35	20	16	27	1.94
64338--64489	67	2.3	67	87	1	205	16	26	26	30	1.97
76441--76531	33	2.8	33	93	0	155	23	13	6	57	1.59
80240--80290	22	2.3	22	100	0	102	29	15	17	37	1.91
83236--83282	17	2.7	17	75	15	51	17	23	25	34	1.96
84630--84669	21	2.0	21	85	5	55	15	12	22	50	1.77
84832--84986	43	3.7	43	74	10	115	21	22	13	41	1.88
84906--85046	43	3.3	42	82	5	167	21	17	13	46	1.83
89171--89417	130	1.9	130	92	0	415	35	14	13	36	1.85
89185--89448	130	2.0	128	81	5	298	39	12	13	34	1.83
89744--89806	28	2.3	27	78	8	63	46	1	3	49	1.27
89884--89917	16	2.0	18	88	11	54	64	5	2	26	1.30
90039--90088	21	2.4	21	89	0	82	46	0	14	40	1.44
90253--90310	29	2.0	29	86	6	82	27	8	29	34	1.87
90480--90768	82	3.5	82	82	7	324	32	16	17	33	1.93
90601--90738	41	3.4	41	74	9	147	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93733--93782	24	2.1	24	85	7	66	58	12	2	28	1.45
97064--97088	3	8.3	3	100	0	50	0	0	32	68	0.90
97299--97360	30	2.0	31	84	12	83	41	0	3	54	1.16
98636--98687	19	2.7	19	85	8	61	59	0	0	40	0.97
100172--100605	194	2.2	194	86	1	593	41	12	14	32	1.82
101201--101269	19	3.6	19	73	9	68	44	1	15	37	1.56
100909--101325	231	1.8	231	91	1	701	35	6	22	35	1.79
104359--104420	13	4.8	13	81	0	61	29	17	17	35	1.93
109927--109957	15	2.1	15	100	0	62	22	38	6	32	1.80
110489--112059	200	8.0	195	78	10	1121	40	12	14	32	1.84
110946--111309	179	2.0	178	90	1	577	39	13	13	32	1.84
111154--112069	200	4.6	199	86	3	1170	39	12	14	32	1.84
111622--111668	21	2.2	21	77	7	51	21	12	14	51	1.76
111123--112069	401	2.4	390	84	3	1189	39	12	14	33	1.84
114840--114869	15	2.0	15	93	0	51	30	6	13	50	1.67
115120--115261	6	23.7	6	75	2	97	30	9	6	53	1.59
115119--115260	30	4.5	31	78	13	139	30	9	6	54	1.57
115773--115806	3	11.3	3	93	0	50	5	32	0	61	1.20
117325--117369	22	2.0	22	82	0	54	40	11	17	31	1.85
117107--117424	81	3.9	81	86	1	404	36	12	22	29	1.90
117107--117424	163	2.0	162	84	1	413	36	12	22	29	1.90
119284--119321	19	2.0	19	94	0	67	50	7	15	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119382--119433	21	2.5	21	100	0	104	40	19	15	25	1.90
122285--122365	2	40.5	2	100	0	162	50	49	0	0	1.00
123081--123126	23	2.0	24	82	4	58	32	19	10	36	1.87
122784--123395	226	2.7	224	86	3	789	32	15	12	39	1.85
133033--133119	29	3.0	30	69	15	74	51	4	9	34	1.54
133021--133148	57	2.2	59	84	4	172	53	3	8	35	1.48
133163--133198	2	18.0	2	100	0	72	50	0	0	50	1.00
134510--134572	27	2.3	28	81	8	67	46	1	3	49	1.27
134550--134591	17	2.4	18	92	4	68	45	4	7	42	1.52
134615--134647	17	2.0	17	88	5	50	60	3	6	30	1.36
135474--135581	45	2.4	46	85	4	139	30	19	19	30	1.96
136327--136354	14	2.0	14	100	0	56	64	28	0	7	1.20
138244--138345	43	2.4	43	80	4	125	22	23	26	27	2.00
138265--138344	22	3.6	22	79	5	99	23	23	26	26	2.00
138269--138363	44	2.2	42	88	7	138	25	21	25	28	1.99
138265--138363	21	4.7	20	79	10	92	24	21	26	28	1.99
139449--139642	65	3.0	65	78	9	191	26	17	23	31	1.97
140653--140696	21	2.1	21	86	0	61	34	15	40	9	1.79
142218--142297	23	3.6	22	76	5	90	25	25	25	25	2.00

Tables:   1

The End!