genome.fa.s4574.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004574.1 Hibiscus syriacus cultivar Beakdansim tig00010185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97716

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4739--4852	60	1.9	60	85	0	156	37	14	16	31	1.88
4749--4885	60	2.3	60	79	2	150	34	16	17	32	1.92
5697--6342	327	1.9	332	91	4	1050	25	13	16	43	1.85
6376--6444	12	5.8	12	68	0	57	27	13	13	46	1.79
6379--6457	24	3.3	24	94	0	140	25	15	15	44	1.85
6861--6900	20	2.0	20	95	0	71	25	32	0	42	1.55
9012--9048	19	1.9	19	94	0	65	10	5	24	59	1.52
8978--9187	90	2.4	86	69	24	202	21	3	20	53	1.61
10047--10092	23	2.0	23	91	0	74	36	21	4	36	1.74
13709--13802	20	4.7	20	94	0	143	40	19	15	24	1.90
22097--22141	17	2.6	17	85	3	54	20	17	31	31	1.96
22558--22595	19	2.0	19	100	0	76	36	21	0	42	1.53
23289--23331	18	2.4	18	100	0	86	34	16	44	4	1.68
30706--30864	64	2.5	63	86	7	207	24	19	25	30	1.98
30816--30848	17	1.9	17	93	0	57	15	18	39	27	1.90
30817--30861	17	2.6	17	85	3	54	20	17	33	28	1.95
32986--33048	16	3.9	16	79	8	65	52	1	0	46	1.10
32988--33048	20	3.3	18	79	18	56	54	1	0	44	1.10
33908--34000	40	2.4	39	91	7	154	53	2	10	33	1.47
34383--34455	36	2.0	36	94	0	128	41	31	2	24	1.69
35144--35210	18	3.7	18	95	0	116	23	34	13	28	1.93
35334--35386	15	3.0	19	65	21	51	47	5	13	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35634--36088	238	1.9	236	86	2	653	29	15	14	41	1.86
36533--36590	30	1.9	30	96	0	107	65	6	5	22	1.37
45193--45251	3	18.7	3	79	10	55	40	0	0	59	0.97
46561--46838	145	1.9	146	79	9	311	40	6	7	45	1.59
53921--54142	114	1.9	114	94	0	390	32	15	21	30	1.94
55193--55371	76	2.4	77	82	4	204	30	13	23	32	1.93
56704--56762	22	2.7	22	91	0	100	33	10	13	42	1.78
57439--59003	76	20.6	76	95	0	2733	24	19	21	34	1.96
58936--59084	45	3.3	45	88	1	226	24	20	18	36	1.94
59191--59260	3	22.7	3	80	11	70	40	0	0	60	0.97
64009--64055	17	2.6	17	90	10	67	29	19	0	51	1.47
65303--65355	25	2.1	25	82	6	63	30	3	11	54	1.53
75113--75148	19	1.9	18	94	5	63	25	0	19	55	1.43
75857--75890	12	2.7	13	90	4	52	38	0	2	58	1.13
77850--77889	19	2.0	20	85	4	55	42	0	2	55	1.13
77850--77889	20	2.0	20	85	4	55	42	0	2	55	1.13
82502--82548	20	2.4	19	82	10	60	42	2	10	44	1.51
87254--87846	54	11.1	54	82	5	645	22	24	18	33	1.97
87262--87846	109	5.5	105	86	5	651	23	24	18	33	1.97
87850--88012	53	3.1	53	88	6	240	26	26	15	30	1.96
88989--89042	8	6.9	8	93	4	83	12	7	0	79	0.92
88986--89040	15	3.6	15	87	4	83	12	7	0	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88988--89040	7	7.0	7	87	10	61	13	5	0	81	0.86

Tables:   1

The End!