Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004575.1 Hibiscus syriacus cultivar Beakdansim tig00010189_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93027

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7445--7482
17
2.2
18
85
4
51
39
0
5
55
1.23
7997--8075
2
39.5
2
100
0
158
49
0
0
50
1.00
10095--10204
31
3.4
31
72
18
107
39
19
19
22
1.93
27459--27516
20
3.0
20
82
5
66
50
8
18
22
1.74
27611--27670
26
2.3
26
100
0
120
23
13
6
56
1.60
27688--27719
15
2.1
15
94
0
55
65
0
0
34
0.93
30116--30140
12
2.1
12
100
0
50
36
0
24
40
1.55
30404--30447
22
2.0
22
87
12
65
22
27
27
22
1.99
30781--30854
2
37.0
2
100
0
148
50
0
0
50
1.00
31123--31147
12
2.1
12
100
0
50
68
0
8
24
1.16
32011--32138
31
4.1
31
74
6
123
28
17
20
33
1.96
32956--33002
22
2.1
22
88
0
67
23
19
17
40
1.91
32964--33008
22
2.0
22
91
0
72
22
20
17
40
1.92
32999--33050
21
2.6
20
82
8
61
26
17
9
46
1.79
34454--34478
12
2.1
12
100
0
50
36
0
24
40
1.55
34742--34786
22
2.0
22
95
0
81
22
28
26
22
1.99
35929--35972
20
2.3
18
88
7
61
34
2
25
38
1.68
35974--36283
153
2.0
153
99
0
611
42
7
18
31
1.78
37341--37397
22
2.5
23
85
5
71
19
14
19
47
1.82
37361--37425
21
3.0
21
82
10
71
24
13
15
46
1.82
38838--38871
16
2.1
16
100
0
68
52
0
47
0
1.00
40489--40603
33
3.6
31
74
14
99
54
2
6
35
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40573--40636
27
2.4
27
86
5
85
54
1
1
42
1.19
40594--40657
27
2.5
27
85
9
82
53
0
4
42
1.22
42880--42915
5
7.0
5
87
6
54
80
0
19
0
0.71
42878--42914
16
2.2
17
95
4
67
83
0
16
0
0.64
43331--43364
11
3.1
11
87
12
52
17
8
38
35
1.81
44531--44596
27
2.4
27
100
0
132
42
12
34
10
1.77
44531--44596
12
4.8
15
78
21
90
42
12
34
10
1.77
70215--70253
7
5.6
7
100
0
78
38
15
0
46
1.46
75711--75920
105
2.0
105
100
0
420
46
9
20
22
1.80
78815--78846
2
16.0
2
93
0
55
50
3
0
46
1.17
81853--81979
55
2.3
56
84
4
159
40
16
14
27
1.88
82239--82422
54
3.5
54
83
8
252
36
11
18
33
1.87
82607--82645
20
2.0
20
85
14
55
66
5
0
28
1.12
85058--85096
19
2.0
19
85
5
51
35
17
2
43
1.63
85377--85412
3
12.0
3
100
0
72
33
0
0
66
0.92
87055--87101
22
2.1
23
96
4
87
38
0
12
48
1.41
87051--87106
23
2.4
25
80
20
75
37
0
10
51
1.37

Tables:   1

The End!