Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004576.1 Hibiscus syriacus cultivar Beakdansim tig00010194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120744

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4094--4141
21
2.3
21
96
0
87
27
18
12
41
1.86
4637--4671
5
6.8
5
90
6
52
25
0
74
0
0.82
5119--5165
24
2.0
24
91
8
78
25
25
4
44
1.72
5115--5172
24
2.4
24
81
16
75
27
20
8
43
1.81
5255--5298
18
2.3
20
92
7
74
45
0
0
54
0.99
5255--5309
22
2.6
21
86
11
69
49
0
0
50
1.00
5210--5310
50
2.0
51
81
11
120
49
1
0
48
1.12
5662--5708
24
1.9
25
86
4
69
46
0
2
51
1.13
8164--8299
42
3.2
42
70
13
123
31
16
15
36
1.90
11293--11353
11
5.5
11
76
0
68
42
39
9
8
1.68
11289--11364
22
3.5
22
92
0
125
47
36
7
7
1.62
12204--12442
109
2.2
109
80
3
277
17
17
15
49
1.80
12625--12655
10
3.1
10
100
0
62
32
0
0
67
0.91
18262--18314
21
2.5
21
93
0
88
32
30
20
16
1.95
18318--18507
21
9.3
19
76
15
164
21
20
23
34
1.96
18310--18507
42
4.8
42
89
2
296
21
19
23
35
1.96
18596--18628
6
5.5
6
100
0
66
33
51
15
0
1.43
19397--19510
21
5.4
21
71
15
101
36
22
19
21
1.95
19390--19517
42
3.0
42
89
0
202
35
22
19
22
1.96
22041--22073
2
16.5
2
100
0
66
51
0
0
48
1.00
23739--23779
21
2.0
21
85
9
57
48
0
0
51
1.00
29728--29797
29
2.4
30
80
9
81
37
15
7
40
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31527--31581
2
27.5
2
100
0
110
50
0
0
49
1.00
33057--33117
31
2.0
31
96
0
113
34
24
16
24
1.95
37640--37675
13
2.6
15
83
16
51
69
2
0
27
1.02
38942--38983
21
2.0
21
81
9
50
47
7
2
42
1.43
40935--40993
27
2.1
28
84
9
77
42
23
5
28
1.75
41705--41777
30
2.4
30
90
0
119
36
9
31
21
1.86
41920--41950
12
2.6
12
94
0
53
29
48
12
9
1.73
43279--43592
128
2.5
128
77
9
282
37
15
15
30
1.89
47558--47589
2
15.5
2
93
6
55
50
0
3
46
1.17
47736--47767
12
2.7
12
90
0
55
62
0
12
25
1.30
49513--49568
14
3.9
14
69
17
51
62
3
1
32
1.23
55419--55458
22
1.9
20
90
10
62
42
2
5
50
1.37
59424--59448
10
2.5
10
100
0
50
0
0
8
92
0.40
68976--69026
19
2.6
19
84
3
75
82
1
7
7
0.92
69224--69271
17
2.8
17
100
0
96
18
6
10
64
1.45
69225--69270
8
5.5
8
80
10
56
19
4
10
65
1.41
72284--72338
20
2.8
21
76
23
66
30
23
7
38
1.82
75834--75901
19
3.6
19
73
15
61
70
0
5
23
1.09
75927--75968
17
2.4
18
92
4
68
71
0
7
21
1.09
76624--76740
32
3.3
32
67
29
85
61
12
1
23
1.41
76593--76800
76
2.8
76
92
2
341
59
12
1
25
1.44
78701--78838
5
27.8
5
69
12
72
73
2
5
19
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78757--78839
6
13.8
6
75
18
59
79
2
3
14
0.97
78755--78838
33
2.8
28
79
19
98
78
2
3
15
0.99
78790--78842
7
7.7
7
76
19
58
81
0
1
16
0.79
78780--78832
23
2.4
22
90
3
79
79
1
3
15
0.96
84292--84350
19
3.1
19
75
4
57
69
0
6
23
1.12
85086--85204
32
3.4
32
67
26
89
60
12
1
25
1.42
85055--85260
75
2.7
75
96
1
376
58
12
1
27
1.42
91710--92757
55
19.1
55
78
5
778
28
21
18
31
1.97
91702--92757
110
9.6
110
79
3
910
28
21
18
30
1.97
91747--92757
165
6.1
165
80
4
939
28
21
18
30
1.97
94080--94403
170
1.9
170
99
0
639
28
18
15
37
1.91
94947--95890
472
2.0
472
99
0
1861
29
21
16
32
1.95
101894--101937
19
2.2
21
80
12
56
59
9
9
22
1.56
106041--106116
2
38.0
2
100
0
152
50
0
0
50
1.00
111968--112202
45
5.2
45
88
0
335
44
11
19
24
1.84
117996--118047
20
2.6
20
90
0
77
44
15
19
21
1.87
118009--118049
20
2.0
20
100
0
82
43
14
21
19
1.87
117899--118120
115
1.9
115
91
1
365
39
13
23
23
1.90
118532--118901
45
8.2
45
90
0
560
40
13
21
25
1.89

Tables:   1

The End!