Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004577.1 Hibiscus syriacus cultivar Beakdansim tig00010202_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82731

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6847--7000
65
2.4
65
85
5
197
28
22
18
31
1.97
15309--15351
22
2.0
22
90
0
68
9
23
41
25
1.84
15334--15394
20
2.9
21
87
7
79
18
26
34
21
1.96
19198--19250
21
2.6
21
82
11
65
35
9
1
52
1.45
21088--21143
20
2.7
21
83
5
87
16
23
42
17
1.88
22307--22413
44
2.4
44
85
0
151
29
19
20
29
1.97
22906--22949
13
3.3
13
77
3
52
38
11
6
43
1.67
24323--24389
29
2.4
28
85
9
84
20
1
19
58
1.48
24344--24407
27
2.4
27
82
15
80
15
0
25
59
1.36
25038--25193
65
2.4
64
85
5
199
28
23
16
32
1.96
29433--29490
30
1.9
30
89
6
91
36
8
12
43
1.73
30194--30221
2
14.0
2
100
0
56
50
0
0
50
1.00
37381--37414
7
5.0
7
85
7
52
11
29
55
2
1.50
40523--40561
20
2.0
20
84
0
51
69
12
0
17
1.19
41974--42032
3
19.7
3
92
0
100
62
0
1
35
1.05
42350--43329
226
4.4
227
76
13
950
29
19
13
37
1.89
42350--42886
117
4.7
115
91
3
771
29
19
12
38
1.88
42864--43042
94
1.9
93
84
2
241
29
16
17
36
1.92
42944--43329
113
3.4
113
94
0
639
29
20
12
38
1.89
44086--44395
83
3.7
83
90
4
473
36
21
12
29
1.90
45531--45582
1
52.0
1
76
0
50
0
11
0
88
0.52
45531--45582
7
7.4
7
83
14
63
0
11
0
88
0.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45537--45585
10
4.9
10
87
7
73
0
12
0
87
0.54
45531--45585
17
3.1
18
87
12
78
0
12
0
87
0.55
45531--45585
28
1.9
29
96
3
103
0
12
0
87
0.55
56277--56301
7
3.6
7
100
0
50
32
0
0
68
0.90
56984--57022
20
2.0
20
84
0
51
69
10
0
20
1.17
58423--58484
3
20.7
3
93
0
106
62
0
1
35
1.05
65055--65092
14
2.9
13
81
11
51
57
0
0
42
0.98
66473--66508
17
2.1
17
89
0
54
5
8
36
50
1.56
66559--66641
3
27.7
3
92
0
139
62
0
2
34
1.08
66957--67600
116
5.6
113
94
1
914
29
20
12
37
1.89
67543--67795
40
6.5
40
75
8
234
23
22
11
43
1.85
67429--67911
154
3.1
154
97
0
896
25
21
12
40
1.88
67737--68617
114
7.8
114
96
1
1576
27
20
14
37
1.91
67737--68617
339
2.6
341
96
0
1622
27
20
14
37
1.91
69357--69811
83
5.5
83
97
0
838
37
22
13
26
1.91
70479--70521
19
2.2
20
83
8
52
53
9
4
32
1.53
70853--70918
17
3.8
17
82
9
80
0
18
0
81
0.68
70855--70917
15
4.1
15
82
9
74
0
17
0
82
0.67
70855--70906
11
4.5
11
83
11
61
0
15
0
84
0.62
70863--70914
20
2.6
21
84
6
72
0
17
0
82
0.66
82180--82212
14
2.2
16
89
10
52
51
0
0
48
1.00

Tables:   1

The End!