Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004578.1 Hibiscus syriacus cultivar Beakdansim tig00010204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1248949
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 7
Found at i:336786 original size:54 final size:51
Alignment explanation
Indices: 336722--336830 Score: 157
Period size: 54 Copynumber: 2.1 Consensus size: 51
336712 TAAAAAAAAA
*
336722 ATTAAATTATGTTATTTTAATTTTTTGAATA-TTTTATTAATTGTTATTTTTAAT
1 ATTAAATTATGTTA-TTTAATTTTTTGAAAATTTTTATTAA---TTATTTTTAAT
*
336776 ATTAAATTATGTTATTTAATTTTTTTAAAATTTTTATTAATTATTTTTAAT
1 ATTAAATTATGTTATTTAATTTTTTGAAAATTTTTATTAATTATTTTTAAT
336827 ATTA
1 ATTA
336831 TTTCAAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
51 15 0.29
53 14 0.27
54 23 0.44
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (51 bp):
ATTAAATTATGTTATTTAATTTTTTGAAAATTTTTATTAATTATTTTTAAT
Found at i:337393 original size:298 final size:300
Alignment explanation
Indices: 336836--337435 Score: 1154
Period size: 298 Copynumber: 2.0 Consensus size: 300
336826 TATTATTTCA
336836 AATTTTAATTCGTTGAATGTTTATTAATTAGGGAAATTATCGTATATTAAAAGTGTGTATTCGTA
1 AATTTTAATTCGTTGAATGTTTATTAATTAGGGAAATTATCGTATATTAAAAGTGTGTATTCGTA
336901 ACACTAAGATGGACAACCACATCGTATGTGAAGGTATTTATCTGAGGCTAGATTTGGTTACATAG
66 ACACTAAGATGGACAACCACATCGTATGTGAAGGTATTTATCTGAGGCTAGATTTGGTTACATAG
336966 CCAAAATTGTTGGAGGTTGTAACTTGAACCACCCTATTTTGCACTAAACGAGAGGTGGAGACAAG
131 CCAAAATTGTTGGAGGTTGTAACTTGAACCACCCTATTTTGCACTAAACGAGAGGTGGAGACAAG
337031 AGGCACACATTCTATCTTTATGTGGGGTGTGCACCATTACCTTGGAGGATGTTCCAATGCATTTG
196 AGGCACACATTCTATCTTTATGTGGGGTGTGCACCATTACCTTGGAGGATGTTCCAATGCATTTG
337096 GAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAG
261 GAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAG
337136 AATTTTAATTCGTTGAATG-TTATTAATTAGGGAAATTAT-GTATATTAAAAGTGTGTATTCGTA
1 AATTTTAATTCGTTGAATGTTTATTAATTAGGGAAATTATCGTATATTAAAAGTGTGTATTCGTA
337199 ACACTAAGATGGACACACCACATCGTATGTGAAGGTATTTATCTGAGGCTAGATTTGGTTACATA
66 ACACTAAGATGGACA-ACCACATCGTATGTGAAGGTATTTATCTGAGGCTAGATTTGGTTACATA
337264 GCCAAAA-TGTTGGAGGTTGTAACTTGAACCACCCTATTTTTGCACTAAACGAGAGGTGGAGAC-
130 GCCAAAATTGTTGGAGGTTGTAACTTGAACCACCCTA-TTTTGCACTAAACGAGAGGTGGAGACA
337327 AGAGGCACACATTCTATCTTTATGTGGGGTGTGCACCATTACCTTGGAGGATGTTCCAATGCATT
194 AGAGGCACACATTCTATCTTTATGTGGGGTGTGCACCATTACCTTGGAGGATGTTCCAATGCATT
337392 TGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAG
259 TGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAG
337434 AA
1 AA
337436 ATCCAATTTT
Statistics
Matches: 298, Mismatches: 0, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
298 177 0.59
299 102 0.34
300 19 0.06
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (300 bp):
AATTTTAATTCGTTGAATGTTTATTAATTAGGGAAATTATCGTATATTAAAAGTGTGTATTCGTA
ACACTAAGATGGACAACCACATCGTATGTGAAGGTATTTATCTGAGGCTAGATTTGGTTACATAG
CCAAAATTGTTGGAGGTTGTAACTTGAACCACCCTATTTTGCACTAAACGAGAGGTGGAGACAAG
AGGCACACATTCTATCTTTATGTGGGGTGTGCACCATTACCTTGGAGGATGTTCCAATGCATTTG
GAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAG
Found at i:337492 original size:97 final size:97
Alignment explanation
Indices: 337370--337564 Score: 390
Period size: 97 Copynumber: 2.0 Consensus size: 97
337360 CACCATTACC
337370 TTGGAGGATGTTCCAATGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGA
1 TTGGAGGATGTTCCAATGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGA
337435 AATCCAATTTTGAAGAGTTCAACAAAAATGCT
66 AATCCAATTTTGAAGAGTTCAACAAAAATGCT
337467 TTGGAGGATGTTCCAATGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGA
1 TTGGAGGATGTTCCAATGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGA
337532 AATCCAATTTTGAAGAGTTCAACAAAAATGCT
66 AATCCAATTTTGAAGAGTTCAACAAAAATGCT
337564 T
1 T
337565 CCGAGAATGA
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.32
Consensus pattern (97 bp):
TTGGAGGATGTTCCAATGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGA
AATCCAATTTTGAAGAGTTCAACAAAAATGCT
Found at i:337585 original size:97 final size:97
Alignment explanation
Indices: 337382--337586 Score: 338
Period size: 97 Copynumber: 2.1 Consensus size: 97
337372 GGAGGATGTT
*
337382 CCAATGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGAAATCCAATTTTG
1 CCAAAGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGAAATCCAATTTTG
** * **
337447 AAGAGTTCAACAAAAATGCTTTGGAGGATGTT
66 AAGAGTTCAACAAAAATGCTTCCGAGAATGAG
*
337479 CCAATGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGAAATCCAATTTTG
1 CCAAAGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGAAATCCAATTTTG
337544 AAGAGTTCAACAAAAATGCTTCCGAGAATGAG
66 AAGAGTTCAACAAAAATGCTTCCGAGAATGAG
*
337576 GCAAAGCATTT
1 CCAAAGCATTT
337587 ACCCGGACAT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
97 101 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (97 bp):
CCAAAGCATTTGGAGCTTTTGGTAGATGAAAATGTTACTTGTGGAGTGGCAGAAATCCAATTTTG
AAGAGTTCAACAAAAATGCTTCCGAGAATGAG
Found at i:338846 original size:21 final size:21
Alignment explanation
Indices: 338786--338846 Score: 104
Period size: 21 Copynumber: 2.9 Consensus size: 21
338776 CTGTTTATAA
*
338786 TATCGATACTACTGTTCATGG
1 TATCGATACTACTGTTCACGG
*
338807 TATCGGTACTACTGTTCACGG
1 TATCGATACTACTGTTCACGG
338828 TATCGATACTACTGTTCAC
1 TATCGATACTACTGTTCAC
338847 ACATTATCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (21 bp):
TATCGATACTACTGTTCACGG
Found at i:338860 original size:23 final size:21
Alignment explanation
Indices: 338786--338861 Score: 80
Period size: 21 Copynumber: 3.5 Consensus size: 21
338776 CTGTTTATAA
* **
338786 TATCGATACTACTGTTCATGG
1 TATCGGTACTACTGTTCACAG
*
338807 TATCGGTACTACTGTTCACGG
1 TATCGGTACTACTGTTCACAG
* *
338828 TATCGATACTACTGTTCACACAT
1 TATCGGTACTACTGTT--CACAG
338851 TATCGGTACTA
1 TATCGGTACTA
338862 TTCATACAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 34 0.72
23 13 0.28
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (21 bp):
TATCGGTACTACTGTTCACAG
Found at i:338901 original size:19 final size:21
Alignment explanation
Indices: 338857--338905 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 21
338847 ACATTATCGG
338857 TACTATTCATACAATATTGCA
1 TACTATTCATACAATATTGCA
*
338878 -A-TATTCATACAGTA-TG-A
1 TACTATTCATACAATATTGCA
338895 TACTATTCATA
1 TACTATTCATA
338906 AAAATATTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 1 0.04
18 3 0.12
19 20 0.80
20 1 0.04
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (21 bp):
TACTATTCATACAATATTGCA
Found at i:341557 original size:21 final size:21
Alignment explanation
Indices: 341523--341576 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
341513 GGGCTTGATA
*
341523 GTATCGATACTACTGTTCATG
1 GTATCAATACTACTGTTCATG
*
341544 GTATCAATATTACTGTTCATG
1 GTATCAATACTACTGTTCATG
*
341565 GTATCGATACTA
1 GTATCAATACTA
341577 TTCATGCAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (21 bp):
GTATCAATACTACTGTTCATG
Found at i:341650 original size:21 final size:21
Alignment explanation
Indices: 341626--341718 Score: 168
Period size: 21 Copynumber: 4.4 Consensus size: 21
341616 TTGAGCACGG
341626 TACTGTTCATGGTATCGATAC
1 TACTGTTCATGGTATCGATAC
* *
341647 TACTATTCATGGTATCGATGC
1 TACTGTTCATGGTATCGATAC
341668 TACTGTTCATGGTATCGATAC
1 TACTGTTCATGGTATCGATAC
341689 TACTGTTCATGGTATCGATAC
1 TACTGTTCATGGTATCGATAC
341710 TACTGTTCA
1 TACTGTTCA
341719 CAAAGTATCA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 68 1.00
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (21 bp):
TACTGTTCATGGTATCGATAC
Found at i:342629 original size:21 final size:21
Alignment explanation
Indices: 342587--342636 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
342577 ACCATCGCAA
*
342587 GGATACATACTGAGCCCATAG
1 GGATACATACTGAGCACATAG
* *
342608 GGATACATACTGATCACGTAG
1 GGATACATACTGAGCACATAG
*
342629 GGTTACAT
1 GGATACAT
342637 TTTGAGCCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (21 bp):
GGATACATACTGAGCACATAG
Found at i:344129 original size:6 final size:6
Alignment explanation
Indices: 344114--344165 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
344104 AGTTGATCTA
* * * *
344114 AAATTT AAATTC AAA-TC AAATCC AAATTC AAATTC ATATTC AAATTA
1 AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC AAATTC
344161 AAATT
1 AAATT
344166 TATATTGAAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (6 bp):
AAATTC
Found at i:344159 original size:18 final size:18
Alignment explanation
Indices: 344120--344171 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
344110 TCTAAAATTT
* *
344120 AAATTCAAA-TCAAATCC
1 AAATTCAAATTCATATTC
344137 AAATTCAAATTCATATTC
1 AAATTCAAATTCATATTC
* *
344155 AAATTAAAATTTATATT
1 AAATTCAAATTCATATT
344172 GAACTTGACA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 9 0.30
18 21 0.70
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATTCAAATTCATATTC
Found at i:348132 original size:24 final size:24
Alignment explanation
Indices: 348105--348212 Score: 136
Period size: 24 Copynumber: 4.7 Consensus size: 24
348095 TTCGATTTGA
348105 ATTCTGATCTGATACTTGACATGG
1 ATTCTGATCTGATACTTGACATGG
348129 ATTCTGATCTGATA-TCTGACATGG
1 ATTCTGATCTGATACT-TGACATGG
*
348153 ATTCTGATCTGATAC-TGACTTGG
1 ATTCTGATCTGATACTTGACATGG
*
348176 A-T-TGATCTGATACTTGACCTGG
1 ATTCTGATCTGATACTTGACATGG
* *
348198 AAT-TGATATGATACT
1 ATTCTGATCTGATACT
348213 GACCTGATTT
Statistics
Matches: 77, Mismatches: 3, Indels: 9
0.87 0.03 0.10
Matches are distributed among these distances:
21 11 0.14
22 9 0.12
23 21 0.27
24 36 0.47
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (24 bp):
ATTCTGATCTGATACTTGACATGG
Found at i:349463 original size:37 final size:38
Alignment explanation
Indices: 349398--349473 Score: 145
Period size: 37 Copynumber: 2.0 Consensus size: 38
349388 TATTATTTAC
349398 TGAAAAATATAGAGAAACTTTGAAAAAAAGGGAAGGCG
1 TGAAAAATATAGAGAAACTTTGAAAAAAAGGGAAGGCG
349436 TGAAAAATATAGAG-AACTTTGAAAAAAAGGGAAGGCG
1 TGAAAAATATAGAGAAACTTTGAAAAAAAGGGAAGGCG
349473 T
1 T
349474 ATCCCACAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 24 0.63
38 14 0.37
ACGTcount: A:0.51, C:0.05, G:0.26, T:0.17
Consensus pattern (38 bp):
TGAAAAATATAGAGAAACTTTGAAAAAAAGGGAAGGCG
Found at i:352797 original size:21 final size:21
Alignment explanation
Indices: 352780--352851 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
352770 AATTGTCCTG
352780 AAGGACCACATATATGTCCCA
1 AAGGACCACATATATGTCCCA
* * *
352801 AAGTACCTCATAGAATTGTCCCA
1 AAGGACCACATA-TA-TGTCCCA
* **
352824 AAAGACCACATATATGTCCTG
1 AAGGACCACATATATGTCCCA
352845 AAGGACC
1 AAGGACC
352852 GCGTAGAACC
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
21 21 0.54
22 2 0.05
23 16 0.41
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.21
Consensus pattern (21 bp):
AAGGACCACATATATGTCCCA
Found at i:352955 original size:17 final size:17
Alignment explanation
Indices: 352933--352967 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
352923 TTATTTTATT
352933 TATTATATCTTAT-TTCA
1 TATTATAT-TTATGTTCA
352950 TATTATATTTATGTTCA
1 TATTATATTTATGTTCA
352967 T
1 T
352968 GTATTACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.60
Consensus pattern (17 bp):
TATTATATTTATGTTCA
Found at i:353270 original size:14 final size:14
Alignment explanation
Indices: 353226--353272 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
353216 CTTATTTACG
353226 TATCACATA-ATTTA
1 TATCACATAGA-TTA
* **
353240 TGTCACATAGACCA
1 TATCACATAGATTA
353254 TATCACATAGATTA
1 TATCACATAGATTA
353268 TATCA
1 TATCA
353273 TCTTTTCATA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 25 0.96
15 1 0.04
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.34
Consensus pattern (14 bp):
TATCACATAGATTA
Found at i:355722 original size:25 final size:24
Alignment explanation
Indices: 355688--355773 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 24
355678 ACATTTAAAC
355688 AAAAAACCCTATACTACTTTAACAT
1 AAAAAACCCTA-ACTACTTTAACAT
*
355713 AAAAAACCCTAAGGC-ACTTTAACCT
1 AAAAAACCCTAA--CTACTTTAACAT
*
355738 AAAAAACCCTCAA-TAATTATAACAT
1 AAAAAACCCT-AACTACTT-TAACAT
355763 -AAAAACCCTAA
1 AAAAAACCCTAA
355774 ACCCTACATC
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
23 2 0.04
24 13 0.25
25 35 0.66
26 3 0.06
ACGTcount: A:0.51, C:0.24, G:0.02, T:0.22
Consensus pattern (24 bp):
AAAAAACCCTAACTACTTTAACAT
Found at i:356443 original size:2 final size:2
Alignment explanation
Indices: 356436--356471 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
356426 AGATGTGGAA
356436 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
356472 TACAATTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:359171 original size:31 final size:31
Alignment explanation
Indices: 359135--359217 Score: 96
Period size: 31 Copynumber: 2.7 Consensus size: 31
359125 GAGCATATTG
359135 GGGCCTGAGAGCCTACCCAAGAAAGTTCTCA
1 GGGCCTGAGAGCCTACCCAAGAAAGTTCTCA
* * **
359166 GGGCCTCGTG-GCCTACACAAGAAAGTTCTTG
1 GGGCCT-GAGAGCCTACCCAAGAAAGTTCTCA
* *
359197 GGGCTTTAGAGCCTACCCAAG
1 GGGCCTGAGAGCCTACCCAAG
359218 GGTCGCCTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
30 1 0.02
31 39 0.93
32 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (31 bp):
GGGCCTGAGAGCCTACCCAAGAAAGTTCTCA
Found at i:362244 original size:2 final size:2
Alignment explanation
Indices: 362237--362269 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
362227 TTTACAAATA
362237 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
362270 AGTAATATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:363817 original size:20 final size:20
Alignment explanation
Indices: 363779--363819 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
363769 AACCAAATCT
*
363779 AAGAAAATTGGAGAAAAAAA
1 AAGAAAATTCGAGAAAAAAA
363799 AAGAAAATTCGA-AAGAAAAA
1 AAGAAAATTCGAGAA-AAAAA
363819 A
1 A
363820 TTGAGCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.71, C:0.02, G:0.17, T:0.10
Consensus pattern (20 bp):
AAGAAAATTCGAGAAAAAAA
Found at i:370229 original size:20 final size:20
Alignment explanation
Indices: 370204--370296 Score: 65
Period size: 20 Copynumber: 5.0 Consensus size: 20
370194 TCTATTAGTT
*
370204 ATTAGATAGGATCAGTTTTA
1 ATTAGATAGAATCAGTTTTA
*
370224 ATTAGATAGAATTAGTTTT-
1 ATTAGATAGAATCAGTTTTA
*** *
370243 -TT--ATTCTATTAG--TT-
1 ATTAGATAGAATCAGTTTTA
*
370257 ATTAGATAGGATCAGTTTTA
1 ATTAGATAGAATCAGTTTTA
*
370277 ATTAGATATAATCAGTTTTA
1 ATTAGATAGAATCAGTTTTA
370297 TTCTGTTGCT
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
14 2 0.04
15 2 0.04
16 7 0.12
17 6 0.11
18 2 0.04
19 2 0.04
20 35 0.62
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.46
Consensus pattern (20 bp):
ATTAGATAGAATCAGTTTTA
Found at i:370268 original size:53 final size:53
Alignment explanation
Indices: 370188--370295 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
370178 TAACTAGATA
*
370188 TTTTATTCTATTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATTAGTT
1 TTTTATTCTATTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATCAGTT
*
370241 TTTTATTCTATTAGTTATTAGATAGGATCAGTTTTAATTAGATATAATCAGTT
1 TTTTATTCTATTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATCAGTT
370294 TT
1 TT
370296 ATTCTGTTGC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (53 bp):
TTTTATTCTATTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATCAGTT
Found at i:374893 original size:20 final size:20
Alignment explanation
Indices: 374868--374906 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
374858 TCTATTAGTT
*
374868 ATTAGATAGGATCAGTTTTA
1 ATTAGATAGAATCAGTTTTA
*
374888 ATTAGATAGAATTAGTTTT
1 ATTAGATAGAATCAGTTTT
374907 TTATTCTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.44
Consensus pattern (20 bp):
ATTAGATAGAATCAGTTTTA
Found at i:374919 original size:53 final size:53
Alignment explanation
Indices: 374852--374952 Score: 184
Period size: 53 Copynumber: 1.9 Consensus size: 53
374842 TAACTAGATA
*
374852 TTTTATTCTATTAGTTATTAGATAGGATCAGTTTTAATTAGATAGAATTAGTT
1 TTTTATTCTATTAGTTATTAGATAGGACCAGTTTTAATTAGATAGAATTAGTT
*
374905 TTTTATTCTGTTAGTTATTAGATAGGACCAGTTTTAATTAGATAGAAT
1 TTTTATTCTATTAGTTATTAGATAGGACCAGTTTTAATTAGATAGAAT
374953 CAATTTTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.32, C:0.05, G:0.16, T:0.48
Consensus pattern (53 bp):
TTTTATTCTATTAGTTATTAGATAGGACCAGTTTTAATTAGATAGAATTAGTT
Found at i:374946 original size:20 final size:20
Alignment explanation
Indices: 374921--374980 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
374911 TCTGTTAGTT
* *
374921 ATTAGATAGGACCAGTTTTA
1 ATTAGATAGAATCAGTTTTA
*
374941 ATTAGATAGAATCAATTTTA
1 ATTAGATAGAATCAGTTTTA
374961 ATTAGATAGAATCAGTTTTA
1 ATTAGATAGAATCAGTTTTA
374981 TTCTGTTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (20 bp):
ATTAGATAGAATCAGTTTTA
Found at i:375599 original size:23 final size:21
Alignment explanation
Indices: 375573--375646 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 21
375563 GGAGGTATCA
375573 ATACCCCCTTTGAATGGGTACCG
1 ATACCCCC-TTGAA-GGGTACCG
*
375596 ATACCCTGCTTGAAGGGGTACCG
1 ATACCC-CCTTGAA-GGGTACCG
*
375619 ATACTCCCACATG-AGGGTACCG
1 ATAC-CCC-CTTGAAGGGTACCG
375641 ATACCC
1 ATACCC
375647 TACACGGGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 2 0.05
22 12 0.27
23 24 0.55
24 6 0.14
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.22
Consensus pattern (21 bp):
ATACCCCCTTGAAGGGTACCG
Found at i:377965 original size:37 final size:38
Alignment explanation
Indices: 377924--377998 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
377914 TATTTTCAAA
377924 GTATTA-GAGTAAGGGGGAGTAATTTCAAAACTTGATT
1 GTATTACGAGTAAGGGGGAGTAATTTCAAAACTTGATT
*
377961 GTATTACGAGTAAGGGGGAGTAATTTTAAAACTTGATT
1 GTATTACGAGTAAGGGGGAGTAATTTCAAAACTTGATT
377999 TGAAAAATGA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 6 0.17
38 30 0.83
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (38 bp):
GTATTACGAGTAAGGGGGAGTAATTTCAAAACTTGATT
Found at i:378354 original size:21 final size:21
Alignment explanation
Indices: 378330--378369 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
378320 CAGATTGCTC
378330 AGAGGGTACCCATACCCCTCA
1 AGAGGGTACCCATACCCCTCA
* **
378351 AGAGTGTACTGATACCCCT
1 AGAGGGTACCCATACCCCT
378370 ATGTAAGATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.33, G:0.20, T:0.20
Consensus pattern (21 bp):
AGAGGGTACCCATACCCCTCA
Found at i:380063 original size:2 final size:2
Alignment explanation
Indices: 380058--380102 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
380048 ACGTTGCAAC
380058 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
380100 AT A
1 AT A
380103 GGGTGAATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:380600 original size:23 final size:23
Alignment explanation
Indices: 380566--380609 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
380556 TTAAGAATAG
380566 ATTTAATACATACTAAA-ATTATT
1 ATTTAATACATA-TAAATATTATT
380589 ATTTAACT-CATATAAATATTA
1 ATTTAA-TACATATAAATATTA
380610 AATTCAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.21
23 14 0.74
24 1 0.05
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTAATACATATAAATATTATT
Found at i:380717 original size:11 final size:12
Alignment explanation
Indices: 380692--380716 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
380682 ATATTTAACT
380692 AATCAATTAAAA
1 AATCAATTAAAA
380704 AATCAATTAAAA
1 AATCAATTAAAA
380716 A
1 A
380717 TTTAAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
AATCAATTAAAA
Found at i:381619 original size:171 final size:172
Alignment explanation
Indices: 381301--381632 Score: 542
Period size: 171 Copynumber: 1.9 Consensus size: 172
381291 AAAATCCTTA
* * *
381301 TACCAGCCATAGGTGGTCACCAGCATAGTTGCAATCACAGTCGACCAATCATACACCTATCATTT
1 TACCAGCCATAGGTGGTCACCACCATAGTTGCAATCACAGTCGACCAATCATACACCTATCAGTC
* * * * * * *
381366 TTTGCCACCACTGTCGCCCTCGTTCGCCGTCACCGGTAACATACATGGGATTCGAACAAGAACGA
66 GTCGCCACCACTGCCGCCCTCATTCGCCATCACCGGTAACATACATAGGATTCGAACAAGAACAA
381431 TGAGATACTCATTGGTGTATAGTTTTACATTCCAAACCCCAT
131 TGAGATACTCATTGGTGTATAGTTTTACATTCCAAACCCCAT
*
381473 TACCAGCCATAGGTGGTCACCACCATAGTTGCCATCACAGTCGACCAATCATACACCTATC-GTC
1 TACCAGCCATAGGTGGTCACCACCATAGTTGCAATCACAGTCGACCAATCATACACCTATCAGTC
381537 GTCGCCA-CAGCTGCCGCCCTCATTCGCCATCACCGGTAACATACATAGGATTCGAACAAGAACA
66 GTCGCCACCA-CTGCCGCCCTCATTCGCCATCACCGGTAACATACATAGGATTCGAACAAGAACA
381601 ATGAGATACTCATTGGTGTATAGTTTTACATT
130 ATGAGATACTCATTGGTGTATAGTTTTACATT
381633 GTCAGACTCG
Statistics
Matches: 148, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
170 2 0.01
171 87 0.59
172 59 0.40
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (172 bp):
TACCAGCCATAGGTGGTCACCACCATAGTTGCAATCACAGTCGACCAATCATACACCTATCAGTC
GTCGCCACCACTGCCGCCCTCATTCGCCATCACCGGTAACATACATAGGATTCGAACAAGAACAA
TGAGATACTCATTGGTGTATAGTTTTACATTCCAAACCCCAT
Found at i:387147 original size:5 final size:5
Alignment explanation
Indices: 387137--387180 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
387127 ATTTACTTAT
* *
387137 TTTTA TTTTA TTTTA TTATC TTTTAGA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTT--A TTTTA TTTTA TTTTA TT
387181 AGTTTTCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 29 0.88
7 4 0.12
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:393301 original size:30 final size:30
Alignment explanation
Indices: 393245--393305 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
393235 ATGTGCACCA
*
393245 TGCGTATTTAAATCTTCAGCACGAGTGCCT
1 TGCGTATTTAAATCTTCAACACGAGTGCCT
* *
393275 TGCGTATTTAAATCTTCAATATGAGTGCCT
1 TGCGTATTTAAATCTTCAACACGAGTGCCT
393305 T
1 T
393306 CAACATGAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (30 bp):
TGCGTATTTAAATCTTCAACACGAGTGCCT
Found at i:397187 original size:37 final size:37
Alignment explanation
Indices: 397141--397248 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
397131 AACATAACAT
* *
397141 TAGAATTTTACTAGGATTCAAACTCCTAAAAATAGGA
1 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATAAGA
*
397178 TAGAGTTTTACTAGGATTCAAACTCCTAAATATAAGA
1 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATAAGA
* **
397215 TAGAGTTCTACTATTATTCAAACTCCTAAAAATA
1 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATA
397249 TGATCCACAA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (37 bp):
TAGAGTTTTACTAGGATTCAAACTCCTAAAAATAAGA
Found at i:397855 original size:2 final size:2
Alignment explanation
Indices: 397848--397872 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
397838 TTTTATTAAT
397848 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
397873 TATTTTTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:397930 original size:10 final size:10
Alignment explanation
Indices: 397906--397974 Score: 72
Period size: 9 Copynumber: 7.1 Consensus size: 10
397896 TTTATTTATA
397906 TATTTTTC-T
1 TATTTTTCTT
*
397915 TCTTTTTCTT
1 TATTTTTCTT
397925 TATTTTTCTT
1 TATTTTTCTT
397935 TATTTTTTCTT
1 TA-TTTTTCTT
*
397946 TATTTTAC-T
1 TATTTTTCTT
*
397955 TATTATT-TT
1 TATTTTTCTT
*
397964 AATTTTTCTT
1 TATTTTTCTT
397974 T
1 T
397975 CTTTATATTA
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
9 19 0.40
10 19 0.40
11 10 0.21
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (10 bp):
TATTTTTCTT
Found at i:397941 original size:11 final size:11
Alignment explanation
Indices: 397917--397951 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
397907 ATTTTTCTTC
397917 TTTTTCTTTA-
1 TTTTTCTTTAT
397927 TTTTTCTTTAT
1 TTTTTCTTTAT
397938 TTTTTCTTTAT
1 TTTTTCTTTAT
397949 TTT
1 TTT
397952 ACTTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTCTTTAT
Found at i:397943 original size:21 final size:21
Alignment explanation
Indices: 397917--398022 Score: 74
Period size: 21 Copynumber: 5.0 Consensus size: 21
397907 ATTTTTCTTC
*
397917 TTTTTCTTTATTTTTCTTTAT
1 TTTTTCTTTATTTTACTTTAT
397938 TTTTTCTTTATTTTAC-TTAT
1 TTTTTCTTTATTTTACTTTAT
* *
397958 TATTTTAATTT-TTCTTTCTTTAT
1 T-TTTT-CTTTATT-TTACTTTAT
* * *
397981 ATTATCTTT-TATTTAATTTATT
1 TTTTTCTTTAT-TTTACTTTA-T
* *
398003 TTTTTCTTCATTTTAATTTA
1 TTTTTCTTTATTTTACTTTA
398023 ATTAATTAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
20 5 0.07
21 31 0.46
22 26 0.39
23 5 0.07
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTCTTTATTTTACTTTAT
Found at i:397952 original size:16 final size:16
Alignment explanation
Indices: 397933--398017 Score: 57
Period size: 17 Copynumber: 5.2 Consensus size: 16
397923 TTTATTTTTC
397933 TTTATTTTTTCTTTAT
1 TTTATTTTTTCTTTAT
* *
397949 TTTACTTATTAT-TTTAA
1 TTTA-TT-TTTTCTTTAT
*
397966 TTT-TTCTTTCTTTAT
1 TTTATTTTTTCTTTAT
* * * *
397981 ATTATCTTTTATTTAA
1 TTTATTTTTTCTTTAT
*
397997 TTTATTTTTTTCTTCAT
1 TTTA-TTTTTTCTTTAT
398014 TTTA
1 TTTA
398018 ATTTAATTAA
Statistics
Matches: 49, Mismatches: 15, Indels: 9
0.67 0.21 0.12
Matches are distributed among these distances:
14 2 0.04
15 8 0.16
16 15 0.31
17 21 0.43
18 3 0.06
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTATTTTTTCTTTAT
Found at i:397958 original size:30 final size:27
Alignment explanation
Indices: 397897--397974 Score: 68
Period size: 30 Copynumber: 2.7 Consensus size: 27
397887 TATTATTATT
397897 TTATTTATATATTTTTCTTCTTTTTCTTTA
1 TTATTT-TA-ATTTTTCTT-TTTTTCTTTA
* *
397927 TTTTTCTTTATTTTTTCTTTATTTTAC-TTA
1 -TTAT-TTTAATTTTTCTTT-TTTT-CTTTA
397957 TTATTTTAATTTTTCTTT
1 TTATTTTAATTTTTCTTT
397975 CTTTATATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
28 13 0.32
29 4 0.10
30 15 0.38
31 6 0.15
32 2 0.05
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (27 bp):
TTATTTTAATTTTTCTTTTTTTCTTTA
Found at i:397977 original size:53 final size:55
Alignment explanation
Indices: 397868--397994 Score: 136
Period size: 53 Copynumber: 2.3 Consensus size: 55
397858 TATATATATA
* * **
397868 TATATTAT-TTTTACTTTTTTATTATTATTTTATTTATATATTTTTCTTCTTTTTCTT
1 TATATTATCTTTTA-TTTTTT-CT-TTATTTTACTTATATATTTTAATTCTTTTTCTT
* *
397925 TAT-TTTTC-TTTATTTTTTCTTTATTTTACTTAT-TATTTTAATTTTTCTTTCTT
1 TATATTATCTTTTATTTTTTCTTTATTTTACTTATATATTTTAATTCTT-TTTCTT
397978 TATATTATCTTTTATTT
1 TATATTATCTTTTATTT
397995 AATTTATTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
52 10 0.17
53 21 0.36
54 5 0.08
55 13 0.22
56 7 0.12
57 3 0.05
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (55 bp):
TATATTATCTTTTATTTTTTCTTTATTTTACTTATATATTTTAATTCTTTTTCTT
Found at i:397993 original size:32 final size:31
Alignment explanation
Indices: 397940--397999 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
397930 TTCTTTATTT
*
397940 TTTCTTTATTTTACTTATTATTTTAATTTTTC
1 TTTCTTTATATTACTTATTA-TTTAATTTTTC
397972 TTTCTTTATATTATCTT-TTATTTAATTT
1 TTTCTTTATATTA-CTTATTATTTAATTT
398000 ATTTTTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 8 0.31
32 15 0.58
33 3 0.12
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (31 bp):
TTTCTTTATATTACTTATTATTTAATTTTTC
Found at i:398001 original size:53 final size:52
Alignment explanation
Indices: 397892--398021 Score: 129
Period size: 53 Copynumber: 2.5 Consensus size: 52
397882 TTTTTTATTA
** * * * **
397892 TTATTTTATTTATATATTTTTCTTCTTTTTCTTTATTTTTCTTTATTTTTTCT
1 TTATTTTATTTAT-TATTTTAATTTTTTTTCTTTATTTATCTTTATATTTAAT
*
397945 TTATTTTACTTATTATTTTAATTTTTCTTTCTTTATATTATCTTT-TATTTAAT
1 TTATTTTATTTATTATTTTAATTTTT-TTTCTTTAT-TTATCTTTATATTTAAT
*
397998 TTATTTT-TTTCTTCATTTTAATTT
1 TTATTTTATTTATT-ATTTTAATTT
398022 AATTAATTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
52 14 0.22
53 43 0.67
54 7 0.11
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (52 bp):
TTATTTTATTTATTATTTTAATTTTTTTTCTTTATTTATCTTTATATTTAAT
Found at i:400873 original size:12 final size:13
Alignment explanation
Indices: 400848--400892 Score: 58
Period size: 12 Copynumber: 3.6 Consensus size: 13
400838 AAAAAAGAAG
*
400848 AAGAGAAAACACA
1 AAGAGAAAAAACA
400861 AAG-GAAAAAACA
1 AAGAGAAAAAACA
*
400873 AAGAGAAAAGA-A
1 AAGAGAAAAAACA
400885 AAGAGAAA
1 AAGAGAAA
400893 CAAAAACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 20 0.69
13 9 0.31
ACGTcount: A:0.73, C:0.07, G:0.20, T:0.00
Consensus pattern (13 bp):
AAGAGAAAAAACA
Found at i:401824 original size:24 final size:24
Alignment explanation
Indices: 401770--401826 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
401760 GAAAGGGGCA
*
401770 ATATTTTCAAAACTTTTGGTTAAAC
1 ATATTTTCAAAACTCTT-GTTAAAC
*
401795 AT-TTTTCAAAACTCTT-TTAATC
1 ATATTTTCAAAACTCTTGTTAAAC
401817 GATATTTTCA
1 -ATATTTTCA
401827 GAACGTTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 5 0.18
23 2 0.07
24 19 0.68
25 2 0.07
ACGTcount: A:0.33, C:0.14, G:0.05, T:0.47
Consensus pattern (24 bp):
ATATTTTCAAAACTCTTGTTAAAC
Found at i:402053 original size:32 final size:32
Alignment explanation
Indices: 401983--402054 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
401973 GAACATTTGA
* * *
401983 AGATTCAACATCAAATGTTGGGGCATTTTTGG
1 AGATTCAACATCAAATATTGGGGCATCTTCGG
*
402015 AAATTCAACATCAAATATTGGGGCATCTTCGG
1 AGATTCAACATCAAATATTGGGGCATCTTCGG
*
402047 GGATTCAA
1 AGATTCAA
402055 AATCCTGATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (32 bp):
AGATTCAACATCAAATATTGGGGCATCTTCGG
Found at i:402869 original size:110 final size:108
Alignment explanation
Indices: 402577--402870 Score: 403
Period size: 109 Copynumber: 2.7 Consensus size: 108
402567 TCGAGAAAAG
* * *
402577 CTGACTGTTAACAAATAACTTTTCAGTTTCATTTAGAGTCAATTTCAACTTCACAACGAAGGATA
1 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTT-AACTTCACAACGAAGGATA
* * *
402642 TTGGACTCAAGACAACACAAGTTCAACTTCACAGCGAAGGGCGA
65 TTGAACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGCGA
* * * * *
402686 CTGACTATCAATAAACAACTTTTCAGTTTCATTCAGAGTAAATTTTAACTTCACAGA-TAAGAAT
1 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAA-TTTAACTTCACA-ACGAAGGAT
* *
402750 ATT-AGACTCGTGACAACTCAAGCTCAACTTCACAGCGAAGGGGCGA
64 ATTGA-ACTCGAGACAACACAAGCTCAACTTCACAGCGAA-GGGCGA
402796 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTGTAACTTCACAACGAAGGATA
1 CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATT-TAACTTCACAACGAAGGATA
402861 TTGAACTCGA
65 TTGAACTCGA
402871 AGCGAGATAA
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
109 86 0.54
110 72 0.45
111 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (108 bp):
CTGACTGTCAACAAACAACTTTTCAGTTTCATTCAGAGTCAATTTAACTTCACAACGAAGGATAT
TGAACTCGAGACAACACAAGCTCAACTTCACAGCGAAGGGCGA
Found at i:404056 original size:37 final size:37
Alignment explanation
Indices: 404010--404150 Score: 221
Period size: 37 Copynumber: 3.8 Consensus size: 37
404000 AACATAACAT
*
404010 TAGAATTTTACTAGGATTCAAACTCCTAAAAATAGGA
1 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATAGGA
*
404047 TAGAGTTTTACTA-TACTTCAAACTCCTAAAAATAGGA
1 TAGAGTTTTACTAGGA-TTCAAACTCCTAAAAATAGGA
*
404084 TAGAGTTTTACTAGGATTCAAACTCCTAAAAGTAGGA
1 TAGAGTTTTACTAGGATTCAAACTCCTAAAAATAGGA
* *
404121 TAGAGTTCTACTATGATTCAAACTCCTAAA
1 TAGAGTTTTACTAGGATTCAAACTCCTAAA
404151 TATAAGATCC
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
36 1 0.01
37 94 0.98
38 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (37 bp):
TAGAGTTTTACTAGGATTCAAACTCCTAAAAATAGGA
Found at i:407276 original size:3 final size:3
Alignment explanation
Indices: 407241--407266 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
407231 TAGTACTATT
407241 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
407267 TTTTAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:407838 original size:129 final size:129
Alignment explanation
Indices: 407593--407825 Score: 290
Period size: 129 Copynumber: 1.8 Consensus size: 129
407583 GGACGGCTAA
* *
407593 TTATCAAAGGTTGACACGGCTCCTACATAATGAGGAGATCAAATCGAATGATGACACAACTCATA
1 TTATCAAAGGTTGACAAGGCTCCTACATAATAAGGAGATCAAATCGAATGATGACACAACTCATA
* * * *
407658 CGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGACTTATACGTGATAAAGAGTTCTGG
66 CATGATGAAGAGATCAGGACATCTAAAGGTGATAACACGACTTATACGTGATAAAGAGTTCTGG
* ** ** ** *
407722 TTATC-AAGGATTGACAAGGGTCCTACATAATAAGGAGATCAGGTCGGGTGATGACACAGTTCCT
1 TTATCAAAGG-TTGACAAGGCTCCTACATAATAAGGAGATCAAATCGAATGATGACACAACTCAT
* *
407786 ACATGATGAGGATGAT-AGGACATCTATAGGTGATAACACG
65 ACATGATGAAGA-GATCAGGACATCTAAAGGTGATAACACG
407826 GTTCCTACGT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
128 4 0.05
129 80 0.93
130 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (129 bp):
TTATCAAAGGTTGACAAGGCTCCTACATAATAAGGAGATCAAATCGAATGATGACACAACTCATA
CATGATGAAGAGATCAGGACATCTAAAGGTGATAACACGACTTATACGTGATAAAGAGTTCTGG
Found at i:408395 original size:116 final size:117
Alignment explanation
Indices: 408142--408591 Score: 708
Period size: 115 Copynumber: 3.9 Consensus size: 117
408132 ACACTGATGT
* * ** *
408142 AAGGTTGAACAAGTTCTTCTTATTATGAACTTCTCCTTTATCGTTGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTAT
* * *
408207 GAACTTTCCACTGGAAATGTTGATCCACCTCCTTCTATGATGGAATCAAACC
66 GAACTCTCCACTGAAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACC
* *
408259 AAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTAA
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTAT
* *
408324 GAACTCTCTACT-AAAATGTTGATCCACCTCTTTCTGTGATGGAATCAAACC
66 GAACTCTCCACTGAAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACC
* *
408375 AAGGTTGAACAAGTTCTTCTCATTATGAACTTATTATTCCTCATTGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTAT
* *
408440 GAACTCT--TCTGAAAATGTTGATCCACCTCTTTCTGTGATGGAATCAAACC
66 GAACTCTCCACTGAAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACC
*
408490 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTACTTCCTCATTGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTAT
* *
408555 GAACTCTCCATTGAAAATGTCGATCCACCTCCTTCTG
66 GAACTCTCCACTGAAAATGTTGATCCACCTCCTTCTG
408592 CGTTGGACTT
Statistics
Matches: 306, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
114 2 0.01
115 108 0.35
116 104 0.34
117 92 0.30
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (117 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTAT
GAACTCTCCACTGAAAATGTTGATCCACCTCCTTCTGTGATGGAATCAAACC
Found at i:408547 original size:231 final size:232
Alignment explanation
Indices: 408142--408591 Score: 706
Period size: 231 Copynumber: 1.9 Consensus size: 232
408132 ACACTGATGT
* * * * *
408142 AAGGTTGAACAAGTTCTTCTTATTATGAACTTCTCCTTTATCGTTGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTATCATTCATCATTGGATGAGTTCTTCTCATTAT
*
408207 GAACTTTCCACTGGAAATGTTGATCCACCTCCTTCTATGATGGAATCAAACCAAAGTTGAACAAG
66 GAACTTT-C-CTGAAAATGTTGATCCACCTCCTTCTATGATGGAATCAAACCAAAGTTGAACAAG
* *
408272 TTCTTCTCATTATGAACTTCTTCTTCCTCATTGGATGAGTTCTTCTCATTAAGAACTCTCTACT-
129 TTCTTCTCATTATGAACTTCTACTTCCTCATTGGATGAGTTCTTCTCATTAAGAACTCTCCACTG
* *
408336 AAAATGTTGATCCACCTCTTTCTGTGATGGAATCAAACC
194 AAAATGTCGATCCACCTCCTTCTGTGATGGAATCAAACC
* *
408375 AAGGTTGAACAAGTTCTTCTCATTATGAACTTATTATTCCTCATTGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTATCATTCATCATTGGATGAGTTCTTCTCATTAT
* * *
408440 GAACTCTT-CTGAAAATGTTGATCCACCTCTTTCTGTGATGGAATCAAACCAAGGTTGAACAAGT
66 GAACT-TTCCTGAAAATGTTGATCCACCTCCTTCTATGATGGAATCAAACCAAAGTTGAACAAGT
* *
408504 TCTTCTCATTATGAACTTCTACTTCCTCATTGGATGAGTTCTTCTCATTATGAACTCTCCATTGA
130 TCTTCTCATTATGAACTTCTACTTCCTCATTGGATGAGTTCTTCTCATTAAGAACTCTCCACTGA
408569 AAATGTCGATCCACCTCCTTCTG
195 AAATGTCGATCCACCTCCTTCTG
408592 CGTTGGACTT
Statistics
Matches: 198, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
231 111 0.56
232 22 0.11
233 63 0.32
234 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (232 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTATCATTCATCATTGGATGAGTTCTTCTCATTAT
GAACTTTCCTGAAAATGTTGATCCACCTCCTTCTATGATGGAATCAAACCAAAGTTGAACAAGTT
CTTCTCATTATGAACTTCTACTTCCTCATTGGATGAGTTCTTCTCATTAAGAACTCTCCACTGAA
AATGTCGATCCACCTCCTTCTGTGATGGAATCAAACC
Found at i:408703 original size:92 final size:93
Alignment explanation
Indices: 408539--408710 Score: 247
Period size: 92 Copynumber: 1.8 Consensus size: 93
408529 CTCATTGGAT
* *
408539 GAGTTCTTCTCATTATGAACTCTCCATTGAAAATGTCGATCCACCTCCTTCTGCGTTGGACTTGA
1 GAGTTCTTCTCATTATGAACTCTCCA-TGAAAATGTCGATCCACCTCCTTCTGCGGTGAACTTGA
*
408604 AAGGAACAAGTTCTTTTCTCCTCTAGGAC
65 AAAGAACAAGTTCTTTTCTCCTCTAGGAC
* * * * * *
408633 GAGTTCTTCTCATTATGAACTCTTC-TGGAAATGTTGATTCACCTCCTTCTGTGGTGAATTTGAA
1 GAGTTCTTCTCATTATGAACTCTCCATGAAAATGTCGATCCACCTCCTTCTGCGGTGAACTTGAA
408697 AAGAACAAGTTCTT
66 AAGAACAAGTTCTT
408711 CTCATTATGA
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 45 0.65
94 24 0.35
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.36
Consensus pattern (93 bp):
GAGTTCTTCTCATTATGAACTCTCCATGAAAATGTCGATCCACCTCCTTCTGCGGTGAACTTGAA
AAGAACAAGTTCTTTTCTCCTCTAGGAC
Found at i:410174 original size:22 final size:22
Alignment explanation
Indices: 410127--410174 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
410117 TCTTGCTGAT
* *
410127 ATGAGCCTTCAAATGCCTCAAT
1 ATGAGCCTTCAAATGCCACAAC
*
410149 ATGAGCTTTCAAAATGCCAC-AC
1 ATGAGCCTTC-AAATGCCACAAC
410171 ATGA
1 ATGA
410175 ATCATTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (22 bp):
ATGAGCCTTCAAATGCCACAAC
Found at i:410334 original size:52 final size:52
Alignment explanation
Indices: 410277--410453 Score: 266
Period size: 52 Copynumber: 3.4 Consensus size: 52
410267 GGTGTGAGCT
**
410277 TTCAAGATGCCCCACATGGATTACTTCTGGCTTTTTTATGCTGATGTGAACC
1 TTCAAGATGCCCCACATGGATTACTTCTATCTTTTTTATGCTGATGTGAACC
* * *
410329 TTCAAGATACCCCACATGGATTACTTATATCTTTTTTATGCTTATGTGAACC
1 TTCAAGATGCCCCACATGGATTACTTCTATCTTTTTTATGCTGATGTGAACC
* *
410381 TTCAAGATGCCCCATATGGATTACTTCTATCTTTTTTCATGCTGATGTGAGCC
1 TTCAAGATGCCCCACATGGATTACTTCTATCTTTTTT-ATGCTGATGTGAACC
*
410434 TTCAAGAT-ACCCACATGGAT
1 TTCAAGATGCCCCACATGGAT
410454 AATATGGACA
Statistics
Matches: 112, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
52 91 0.81
53 21 0.19
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (52 bp):
TTCAAGATGCCCCACATGGATTACTTCTATCTTTTTTATGCTGATGTGAACC
Found at i:411957 original size:15 final size:15
Alignment explanation
Indices: 411934--411967 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
411924 TGATTCAATT
*
411934 TTTTTTCTTATTTTG
1 TTTTCTCTTATTTTG
411949 TTTTCTCTTATTTTG
1 TTTTCTCTTATTTTG
411964 TTTT
1 TTTT
411968 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.09, G:0.06, T:0.79
Consensus pattern (15 bp):
TTTTCTCTTATTTTG
Found at i:412233 original size:1 final size:1
Alignment explanation
Indices: 411959--412218 Score: 403
Period size: 1 Copynumber: 260.0 Consensus size: 1
411949 TTTTCTCTTA
* * * *
411959 TTTTGTTTTTTATTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
412024 TTTTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
412089 TTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** *
412154 TTTTTTTCTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
412219 CCTTTATTTC
Statistics
Matches: 235, Mismatches: 24, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 235 1.00
ACGTcount: A:0.00, C:0.04, G:0.00, T:0.95
Consensus pattern (1 bp):
T
Found at i:412234 original size:95 final size:92
Alignment explanation
Indices: 411932--412235 Score: 436
Period size: 95 Copynumber: 3.3 Consensus size: 92
411922 CTTGATTCAA
* * *
411932 TTTTTTTTC--TTATTTTGTTTTCTCTTATTTTGTTTTTTATTTTTTTTTTTTTTTTTCTTT-TT
1 TTTTTTTTCTTTTATTTT-TTTT-TCTT-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTT
*
411994 TTTTTTTTTTTTTTTTTTTTTTTTTCTTTT
63 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
412024 TTTTTTTT-TTTTCTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTCTTTTATTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTT
412088 TTTTTTTTTTTTTTTTTTTTTTTTTTCT
66 TTTTTTTTTTTTTTTTTTTTTTTTTT-T
*
412116 TTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTCCTTT
1 TTTTTTTTCTTTTATTTTTTTTTCTTTTTTTTTTTTTTTTTTTTT-TTTTTTTTTTTTTT-CTTT
412181 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
64 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
412210 TCTTTTTTTCCTTTATTTCTTTTTCT
1 T-TTTTTTTCTTTTATTTTTTTTTCT
412236 CGAAGAATTA
Statistics
Matches: 194, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
90 30 0.15
91 34 0.18
92 21 0.11
93 41 0.21
94 16 0.08
95 52 0.27
ACGTcount: A:0.01, C:0.06, G:0.01, T:0.92
Consensus pattern (92 bp):
TTTTTTTTCTTTTATTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTT
Found at i:413937 original size:15 final size:15
Alignment explanation
Indices: 413914--413943 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
413904 CTTTGCTTTC
413914 TTGAAGACCTTGTGA
1 TTGAAGACCTTGTGA
*
413929 TTGATGACCTTGTGA
1 TTGAAGACCTTGTGA
413944 CTGGTGACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (15 bp):
TTGAAGACCTTGTGA
Found at i:413951 original size:15 final size:15
Alignment explanation
Indices: 413919--413952 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
413909 CTTTCTTGAA
*
413919 GACCTTGTGATTGAT
1 GACCTTGTGACTGAT
*
413934 GACCTTGTGACTGGT
1 GACCTTGTGACTGAT
413949 GACC
1 GACC
413953 AAAATACTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (15 bp):
GACCTTGTGACTGAT
Found at i:418370 original size:3 final size:3
Alignment explanation
Indices: 418338--418362 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
418328 TAGTACTAAT
418338 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
418363 TTAATAATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:434996 original size:16 final size:17
Alignment explanation
Indices: 434966--435016 Score: 68
Period size: 17 Copynumber: 3.1 Consensus size: 17
434956 AAAAGTTTTT
*
434966 GTCAACGGTGGTCAACG
1 GTCAACGCTGGTCAACG
434983 GTCAACGC-GGTCAACG
1 GTCAACGCTGGTCAACG
* *
434999 ATCAATGCTGGTCAACG
1 GTCAACGCTGGTCAACG
435016 G
1 G
435017 GTCGGGTCGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.25, C:0.25, G:0.31, T:0.18
Consensus pattern (17 bp):
GTCAACGCTGGTCAACG
Found at i:435057 original size:20 final size:20
Alignment explanation
Indices: 435016--435072 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
435006 CTGGTCAACG
* *
435016 GGTCGGGTCGG-TC-AGTCG
1 GGTCGGGTCGGACCGAGTCA
435034 GGTCGGGTCGGACCGAGTCA
1 GGTCGGGTCGGACCGAGTCA
*
435054 GGTCAGGTCGGACCG-GTCA
1 GGTCGGGTCGGACCGAGTCA
435073 AACTAGTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.32
19 5 0.15
20 18 0.53
ACGTcount: A:0.12, C:0.25, G:0.46, T:0.18
Consensus pattern (20 bp):
GGTCGGGTCGGACCGAGTCA
Found at i:436940 original size:13 final size:13
Alignment explanation
Indices: 436922--436953 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
436912 TATCCCACTG
*
436922 TATTTGATTGATA
1 TATTTGATTGAAA
436935 TATTTGATTGAAA
1 TATTTGATTGAAA
436948 TATTTG
1 TATTTG
436954 GTTACACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.16, T:0.53
Consensus pattern (13 bp):
TATTTGATTGAAA
Found at i:451156 original size:75 final size:75
Alignment explanation
Indices: 451041--451183 Score: 169
Period size: 75 Copynumber: 1.9 Consensus size: 75
451031 TCATAGTATA
* * * * *
451041 AGTATCCATATTTCAAATTTCGATCTAATTTTCAGTAAAAAATGTTGAACCTAAAGTATCAAACC
1 AGTATCCAAATTTCAAATTTCAATATAATTTTCAGAAAAAAATGTTAAACCTAAAGTATCAAACC
451106 ACAGAGCACG
66 ACAGAGCACG
* * * * * * **
451116 AGTATCGAAATTTCAAATTTCAATATATTTTTTAGAAAAAACTTTTAAATCTAAAGTATTGAACC
1 AGTATCCAAATTTCAAATTTCAATATAATTTTCAGAAAAAAATGTTAAACCTAAAGTATCAAACC
451181 ACA
66 ACA
451184 TAGTAGGAGT
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
75 55 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (75 bp):
AGTATCCAAATTTCAAATTTCAATATAATTTTCAGAAAAAAATGTTAAACCTAAAGTATCAAACC
ACAGAGCACG
Found at i:457565 original size:187 final size:184
Alignment explanation
Indices: 457219--457575 Score: 439
Period size: 187 Copynumber: 1.9 Consensus size: 184
457209 TGTATTTCCC
* *
457219 CTTTCAACTTGTTTTGTTACCGTGGATATTTTTTGACCCATTTGCTAAATTTCAATAACAATTCC
1 CTTTCAACTTGTTTTGTTACCGTGGATATTTTTTGACCCATTCGCTAAATCTCAATAACAATTCC
* * * * *
457284 AGTCAAAATCGGTTTATTTAAGAACCTTTTAACATTTCCGATCTCAACCTATTTTCATAGTGACG
66 AGTCAAAATCGGTTTATTCAAGAACCTTTTAACATTTCCGATCTCAACATAATTTCATAGAGACA
* ** *
457349 GGTAACATTCTTGGGTACAACCAGATTTGTCATAGTCATTAATAACATTTTCGT
131 GGTAACATTCTTAGACACAACCAGATTTGTCATAGCCATTAATAACATTTTCGT
* * *
457403 CTTTTAACTTGTTTTGTTATCGTGGATATTTTCTTTGACCCATTCGCTAAA-CTCTGATAACAAT
1 CTTTCAACTTGTTTTGTTACCGTGGATA-TTT-TTTGACCCATTCGCTAAATCTC-AATAACAAT
* *** *
457467 TTC-GATCAAAATCGGATTTATTCAAGAACCTTTTAACATTTTTTATCTCAACATAATTTCTTAG
63 TCCAG-TCAAAATCGG-TTTATTCAAGAACCTTTTAACATTTCCGATCTCAACATAATTTCATAG
* *** *
457531 AGACATGTAACATTCTTAGACACAATTGGATTTGTTATAGCCATT
126 AGACAGGTAACATTCTTAGACACAACCAGATTTGTCATAGCCATT
457576 CATTTTTGTC
Statistics
Matches: 144, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
184 26 0.18
185 6 0.04
186 37 0.26
187 75 0.52
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (184 bp):
CTTTCAACTTGTTTTGTTACCGTGGATATTTTTTGACCCATTCGCTAAATCTCAATAACAATTCC
AGTCAAAATCGGTTTATTCAAGAACCTTTTAACATTTCCGATCTCAACATAATTTCATAGAGACA
GGTAACATTCTTAGACACAACCAGATTTGTCATAGCCATTAATAACATTTTCGT
Found at i:467139 original size:23 final size:23
Alignment explanation
Indices: 467109--467152 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
467099 ATTACAATAA
467109 AAAGCTTGAACAAATTGATGACG
1 AAAGCTTGAACAAATTGATGACG
467132 AAAGCTTGAACAAATTGATGA
1 AAAGCTTGAACAAATTGATGA
467153 TGAATGGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.23
Consensus pattern (23 bp):
AAAGCTTGAACAAATTGATGACG
Found at i:486167 original size:40 final size:39
Alignment explanation
Indices: 485997--486216 Score: 287
Period size: 39 Copynumber: 5.6 Consensus size: 39
485987 TCAAGGAAAT
* * * *
485997 ATCCAACAATTTATTTTCTTTTACAAAATAGGAAAATAA
1 ATCCAACGATTTATTTCCTTTTACAAAACATGAAAATAA
* *
486036 ATCCAACGATTTATTTCCTTTTATATAACATGAAAATAA
1 ATCCAACGATTTATTTCCTTTTACAAAACATGAAAATAA
* * *
486075 ATCCAATGATTTATTTCGTTATACAAAACATGAAAATAA
1 ATCCAACGATTTATTTCCTTTTACAAAACATGAAAATAA
*
486114 ATCCAACGATTTATTTCCTTTTACAAAACAGGAAAATAAA
1 ATCCAACGATTTATTTCCTTTTACAAAACATGAAAAT-AA
** *
486154 ATCCAATTATTTATTTCCTTTATACAAAATATGAAAATAA
1 ATCCAACGATTTATTTCCTTT-TACAAAACATGAAAATAA
* *
486194 ATCAAACAATTTATTTCCTTTTA
1 ATCCAACGATTTATTTCCTTTTA
486217 TAATCCATAA
Statistics
Matches: 157, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 102 0.65
40 41 0.26
41 14 0.09
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (39 bp):
ATCCAACGATTTATTTCCTTTTACAAAACATGAAAATAA
Found at i:486433 original size:59 final size:59
Alignment explanation
Indices: 486283--486479 Score: 233
Period size: 58 Copynumber: 3.4 Consensus size: 59
486273 TTTCCCTTAA
* *
486283 TAGAATCCTTCAAGATTC-CTAAGAAAATAAATTCAACAATTTATTTGATT--TTACAAA-A
1 TAGAATCATTCAAGATTCTC-AAGAAAATAAATTCAACAATTTATTT--TTCCTTACAAAGT
* * * *
486341 TAGAATTATTCAAGATTCTCTAGGAAATAAATTCAACAATTTATTTTTCCTAACAAAGT
1 TAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTTTCCTTACAAAGT
* * *
486400 TAGAATCATTTAAGATTCTCAAGAAAATAAATTCAACAATTTA-TTTCCCTTACAAGGT
1 TAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTTTCCTTACAAAGT
* *
486458 TAGAATGATTTAAGATTCTCAA
1 TAGAATCATTCAAGATTCTCAA
486480 CAATTTATTT
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
56 2 0.02
58 79 0.65
59 40 0.33
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.36
Consensus pattern (59 bp):
TAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACAATTTATTTTTCCTTACAAAGT
Found at i:486497 original size:44 final size:44
Alignment explanation
Indices: 486432--486523 Score: 139
Period size: 44 Copynumber: 2.1 Consensus size: 44
486422 GAAAATAAAT
* * *
486432 TCAACAATTTATTTCCCTTACAAGGTTAGAATGATTTAAGATTC
1 TCAACAATTTATTTCCCTTACAAAGTTAGAATCATTCAAGATTC
* *
486476 TCAACAATTTATTTTCTTTACAAAGTTAGAATCATTCAAGATTC
1 TCAACAATTTATTTCCCTTACAAAGTTAGAATCATTCAAGATTC
486520 TCAA
1 TCAA
486524 AGAAATAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (44 bp):
TCAACAATTTATTTCCCTTACAAAGTTAGAATCATTCAAGATTC
Found at i:486575 original size:102 final size:103
Alignment explanation
Indices: 486373--486578 Score: 249
Period size: 102 Copynumber: 2.0 Consensus size: 103
486363 GGAAATAAAT
*
486373 TCAACAATTTATTTTTCCTAACAAAGTTAGAATCATTTAAGATTCTCAAGAAAATAAATTCAACA
1 TCAACAATTTATTTTTCCTAACAAAGTTAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACA
* * ***
486438 ATTTATTTCCCTTACAAGGTTAGAATGATTTAAGATTC
66 ATTTATTTCCATTACAAGGTTAGAATCACGCAAGATTC
* * *
486476 TCAACAATTTA-TTTTCTTTACAAAGTTAGAATCATTCAAGATTCTCAA-AGAAATAAATTC-AT
1 TCAACAATTTATTTTTCCTAACAAAGTTAGAATCATTCAAGATTCTCAAGA-AAATAAATTCAAC
* * *
486538 GATTTATTTTCATTGCCAA-GTTAGAATCACCGCAAGATTC
65 AATTTATTTCCATT-ACAAGGTTAGAATCA-CGCAAGATTC
486578 T
1 T
486579 AATGATAAAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
101 22 0.25
102 55 0.62
103 11 0.12
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (103 bp):
TCAACAATTTATTTTTCCTAACAAAGTTAGAATCATTCAAGATTCTCAAGAAAATAAATTCAACA
ATTTATTTCCATTACAAGGTTAGAATCACGCAAGATTC
Found at i:486795 original size:45 final size:45
Alignment explanation
Indices: 486730--486939 Score: 273
Period size: 45 Copynumber: 4.7 Consensus size: 45
486720 GGAATTAATC
* * *
486730 TTTTAATTTTAGCAATCCAATAATCAAAAGGAAC-AGATCATTTGA
1 TTTTAATTTTCGCAACCCAATAATCAAAAGGAACTA-ATCCTTTGA
486775 TTTTAATTTTCGCAACCCAATAATCAGAAA-GAACTAATCCTTTGA
1 TTTTAATTTTCGCAACCCAATAATCA-AAAGGAACTAATCCTTTGA
*
486820 TTTTAATTTTCGCAACCCAATAATTAAAAGGAACTAATCCTTTGA
1 TTTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGA
** * * * *
486865 TTTTAATTTTCATAACTCAATAATTAAAAGGAACTGATCCCTTGA
1 TTTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGA
*
486910 TTTT-ATTTTCGAAAACCCAATAATCAAAAG
1 TTTTAATTTTCG-CAACCCAATAATCAAAAG
486940 CATTGGATTA
Statistics
Matches: 148, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
44 9 0.06
45 135 0.91
46 4 0.03
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.35
Consensus pattern (45 bp):
TTTTAATTTTCGCAACCCAATAATCAAAAGGAACTAATCCTTTGA
Found at i:490310 original size:102 final size:101
Alignment explanation
Indices: 490187--490404 Score: 239
Period size: 102 Copynumber: 2.1 Consensus size: 101
490177 AAGATATTTG
*
490187 TTGTTTCATGAGAAACGGTCTCAAG-GTAAACAAAATTTTGCTTAAGA-GAAATA-A-ATTCAAA
1 TTGTTTCAAGAGAAACGGTCTCAAGAG-AAACAAAA-TTTGCTTAA-ATGAAA-ACAGATTCAAA
* *
490248 GATTTTATGTTTTAAGAGAAACTGTCTCAAGGGAGACAAAA-
62 GA-TTT-TGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAAC
* * * ** * *
490289 TTTTTTCAAGAGAAACTGTCTCGAGAGCGACGAAATTTGTTTAAATGAAAACAGATTCAAAGATT
1 TTGTTTCAAGAGAAACGGTCTCAAGAGAAACAAAATTTGCTTAAATGAAAACAGATTCAAAGATT
*
490354 TTGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAAC
66 TTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAAC
*
490390 TTGTTTCAAGGGAAA
1 TTGTTTCAAGAGAAA
490405 TAGCTTCAAA
Statistics
Matches: 98, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
100 33 0.34
101 29 0.30
102 35 0.36
103 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.29
Consensus pattern (101 bp):
TTGTTTCAAGAGAAACGGTCTCAAGAGAAACAAAATTTGCTTAAATGAAAACAGATTCAAAGATT
TTGTTTAAAGAGAAACTGTCTCAAGAGAGACAAAAC
Found at i:490394 original size:65 final size:65
Alignment explanation
Indices: 490300--490738 Score: 331
Period size: 65 Copynumber: 6.6 Consensus size: 65
490290 TTTTTCAAGA
* * * *
490300 GAAACTGTCTCGAGAGCGACGAAATTTGTTTAAATGAAAACAGATTCAAAGATTTTGTTTAAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAGATTCAAAGATTTTGTTTAAAGG
* * * * * *
490365 GAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGGGAAATAGCTTCAAAGATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAGATTCAAAGATTTTGTTTAAAGG
* * * *
490430 GAAACTGTCTCAAGAGTGACAAAA-TT-TTTAAAAGAAAA-TG-TCTCAAGAGAGACAAAATTTG
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAGAT-TC-A-A-AG----ATTTTG
*
490491 TGTTAAA-A
58 T-TTAAAGG
* * * ** * *
490499 GAAGCTGTCTCAAGGGAGACGAAATTTGTTCCAAGGAAAACATATTCAAAGATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAGATTCAAAGATTTTGTTTAAAGG
* * *
490564 GAAACTGTCTCAAGAGAGACAAAA-TT-TTT-AAGAGAAAA-TGTTTCAAGAGAGACAAAATTTG
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAG-GAAAACAGATTC-A-A-AG----ATTTTG
*
490625 TTTTAAA-A
58 -TTTAAAGG
* * * * *
490633 GAAACAGTCTCAAGGGAGACAAAATTTGTTTCATGGAAAACAGATTCAAAGATTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAGATTCAAAGATTTTGTTTAAAGG
** *
490698 GAAACTGTGACAAGAGAGACAAAATTTGTTTTAAGAGAAAA
1 GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAG-GAAAA
490739 TGTCTTAAGA
Statistics
Matches: 291, Mismatches: 54, Indels: 57
0.72 0.13 0.14
Matches are distributed among these distances:
61 1 0.00
62 9 0.03
63 18 0.06
64 15 0.05
65 143 0.49
66 5 0.02
69 57 0.20
70 15 0.05
71 19 0.07
72 8 0.03
73 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.27
Consensus pattern (65 bp):
GAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAGATTCAAAGATTTTGTTTAAAGG
Found at i:490401 original size:36 final size:36
Alignment explanation
Indices: 490353--490801 Score: 269
Period size: 36 Copynumber: 13.2 Consensus size: 36
490343 ATTCAAAGAT
*
490353 TTTGTTTAAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* *
490389 CTTGTTTCAAGGGAAA-TAG-CTTC-A-A-AG----AT
1 TTTGTTTCAAGGGAAACT-GTC-TCAAGAGAGACAAAA
*
490418 TTTGTTTCAAGGGAAACTGTCTCAAGAGTGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
** *
490454 -TT-TTT-AAAAGAAAATGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
** * * *
490487 TTTGTGTT-AAAAGAAGCTGTCTCAAGGGAGACGAAA
1 TTTGT-TTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * * *
490523 TTTGTTCCAAGGAAAACATAT-TC-A-A-AG----AT
1 TTTGTTTCAAGGGAAAC-TGTCTCAAGAGAGACAAAA
490552 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * *
490588 -TT-TTT-AAGAGAAAATGTTTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* ** * *
490621 TTTGTTTTAAAAGAAACAGTCTCAAGGGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * * *
490657 TTTGTTTCATGGAAAACAGAT-TC-A-A-AG----AT
1 TTTGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAA
**
490686 TTTGTTTCAAGGGAAACTGTGACAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * * *
490722 TTTGTTTTAAGAGAAAATGTCTTAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * * * *
490758 TTTATTTTAAGAGAAGCTGCCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
490794 CTTTGTTT
1 -TTTGTTT
490802 TGAGTAAATT
Statistics
Matches: 318, Mismatches: 58, Indels: 73
0.71 0.13 0.16
Matches are distributed among these distances:
28 3 0.01
29 55 0.17
30 5 0.02
31 3 0.01
32 5 0.02
33 55 0.17
34 11 0.03
35 14 0.04
36 158 0.50
37 9 0.03
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (36 bp):
TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
Found at i:490528 original size:134 final size:134
Alignment explanation
Indices: 490369--490801 Score: 632
Period size: 134 Copynumber: 3.2 Consensus size: 134
490359 TAAAGGGAAA
* * * *
490369 CTGTCTCAAGAGAGACAAAACTTGTTTCAAGGGAAATAGCTTCAAAGATTTTGTTTCAAGGGAAA
1 CTGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAA
* * *
490434 CTGTCTCAAGAGTGACAAAATTTTTAAAAGAAAATGTCTCAAGAGAGACAAAATTTGTGTTAAAA
66 CTGTCTCAAGAGAGACAAAATTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTGTTTTAAAA
490499 GAAG
131 GAAG
* * * *
490503 CTGTCTCAAGGGAGACGAAATTTGTTCCAAGGAAAACATATTCAAAGATTTTGTTTCAAGGGAAA
1 CTGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAA
*
490568 CTGTCTCAAGAGAGACAAAATTTTTAAGAGAAAATGTTTCAAGAGAGACAAAATTTGTTTTAAAA
66 CTGTCTCAAGAGAGACAAAATTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTGTTTTAAAA
*
490633 GAAA
131 GAAG
* * *
490637 CAGTCTCAAGGGAGACAAAATTTGTTTCATGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAA
1 CTGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAA
** * *
490702 CTGTGACAAGAGAGACAAAATTTGTTTTAAGAGAAAATGTCTTAAGAGAGACAAAATTTATTTTA
66 CTGTCTCAAGAGAGACAAAA--T-TTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTGTTTTA
*
490767 AGAGAAG
128 AAAGAAG
*
490774 CTGCCTCAAGAGAGACAAAACTTTGTTT
1 CTGTCTCAAGAGAGACAAAA-TTTGTTT
490802 TGAGTAAATT
Statistics
Matches: 267, Mismatches: 28, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
134 199 0.75
136 1 0.00
137 60 0.22
138 7 0.03
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (134 bp):
CTGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAGATTCAAAGATTTTGTTTCAAGGGAAA
CTGTCTCAAGAGAGACAAAATTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTGTTTTAAAA
GAAG
Found at i:490770 original size:19 final size:18
Alignment explanation
Indices: 490712--490771 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 18
490702 CTGTGACAAG
490712 AGAGACAAAATTTGTTTTA
1 AGAGACAAAATTT-TTTTA
* * *
490731 AGAG--AAAATGTCTTAA
1 AGAGACAAAATTTTTTTA
490747 GAGAGACAAAATTTATTTTA
1 -AGAGACAAAATTT-TTTTA
490767 AGAGA
1 AGAGA
490772 AGCTGCCTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
16 3 0.10
17 10 0.32
19 15 0.48
20 3 0.10
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.30
Consensus pattern (18 bp):
AGAGACAAAATTTTTTTA
Found at i:492336 original size:95 final size:99
Alignment explanation
Indices: 492121--492372 Score: 313
Period size: 95 Copynumber: 2.6 Consensus size: 99
492111 GGTTAGTTGA
* ** * *
492121 ATCCATAAAGCTGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTTAA--TATCATTGTGTAGA
1 ATCCATAAAGCCGACGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCT-TTATTGTGTAGA
*
492184 TGTTATAATCACCTCTATCAGGCTAGCTGAATATT
65 TATTATAATCACCTCTATCAGGCTAGCTGAATATT
492219 ATCCATAAAGCCGACGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATT-T-TA-A-
1 ATCCATAAAGCCGACGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTGTAGAT
* * *
492280 ATTATAATCACCTTTATTAGGCTAGCTGAATCTT
66 ATTATAATCACCTCTATCAGGCTAGCTGAATATT
* * *
492314 ATCTATAAAGCC-A-GGGAATTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGT
1 ATCCATAAAGCCGACGCG--TTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGT
492373 ATATATATAA
Statistics
Matches: 137, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
93 2 0.01
94 1 0.01
95 79 0.58
96 2 0.01
97 2 0.01
98 46 0.34
99 4 0.03
100 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (99 bp):
ATCCATAAAGCCGACGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTGTAGAT
ATTATAATCACCTCTATCAGGCTAGCTGAATATT
Found at i:495338 original size:20 final size:21
Alignment explanation
Indices: 495311--495354 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
495301 GCAAACATGA
*
495311 AAGAAAAAAAGTTAGT-AAAAT
1 AAGAAAAATAG-TAGTGAAAAT
495332 AAGAAAAATAGTAGTGAAAAT
1 AAGAAAAATAGTAGTGAAAAT
495353 AA
1 AA
495355 AAAGGTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18
Consensus pattern (21 bp):
AAGAAAAATAGTAGTGAAAAT
Found at i:498949 original size:31 final size:31
Alignment explanation
Indices: 498898--499074 Score: 151
Period size: 31 Copynumber: 5.7 Consensus size: 31
498888 GTGCATCTTG
* *
498898 GGGCC-TATGGGCATACCCAAGAAAGTTCTCA
1 GGGCCATA-GGGCCTACCCAAGAAAGATCTCA
*
498929 AGGCCATAGGGCCTACCCAAGAAAGATCTCA
1 GGGCCATAGGGCCTACCCAAGAAAGATCTCA
* * * *
498960 GGGTCGTAGGGCCTACCTAAGAATGATCTCA
1 GGGCCATAGGGCCTACCCAAGAAAGATCTCA
* * *
498991 GGGCCA-CGGGACCTACCCAAGAAACATCTTA
1 GGGCCATAGGG-CCTACCCAAGAAAGATCTCA
*** * * *
499022 GGGTTGTAGGGTCTACCCAAGAATGATCTCG
1 GGGCCATAGGGCCTACCCAAGAAAGATCTCA
* * *
499053 GGGCCGTAGAGCCTGCCCAAGA
1 GGGCCATAGGGCCTACCCAAGA
499075 GTCACATTAG
Statistics
Matches: 114, Mismatches: 29, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
30 3 0.03
31 106 0.93
32 5 0.04
ACGTcount: A:0.28, C:0.27, G:0.28, T:0.18
Consensus pattern (31 bp):
GGGCCATAGGGCCTACCCAAGAAAGATCTCA
Found at i:499013 original size:62 final size:62
Alignment explanation
Indices: 498906--499057 Score: 189
Period size: 62 Copynumber: 2.5 Consensus size: 62
498896 TGGGGCCTAT
* * * * * *
498906 GGGCATACCCAAGAAAGTTCTCAAGGCCATAGGG-CCTACCCAAGAAAGATCTCAGGGTCGTA
1 GGGCCTACCCAAGAATGATCTCAGGGCCA-CGGGACCTACCCAAGAAACATCTCAGGGTCGTA
* * *
498968 GGGCCTACCTAAGAATGATCTCAGGGCCACGGGACCTACCCAAGAAACATCTTAGGGTTGTA
1 GGGCCTACCCAAGAATGATCTCAGGGCCACGGGACCTACCCAAGAAACATCTCAGGGTCGTA
* *
499030 GGGTCTACCCAAGAATGATCTCGGGGCC
1 GGGCCTACCCAAGAATGATCTCAGGGCC
499058 GTAGAGCCTG
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
61 3 0.04
62 74 0.96
ACGTcount: A:0.29, C:0.26, G:0.27, T:0.18
Consensus pattern (62 bp):
GGGCCTACCCAAGAATGATCTCAGGGCCACGGGACCTACCCAAGAAACATCTCAGGGTCGTA
Found at i:499072 original size:62 final size:61
Alignment explanation
Indices: 498906--499074 Score: 187
Period size: 62 Copynumber: 2.7 Consensus size: 61
498896 TGGGGCCTAT
* * * * *
498906 GGGCATACCCAAGAAAGTTCTCAAGGCCATAGGGCCTACCCAAGAAAGATCTCAGGGTCGTA
1 GGGCCTACCCAAGAATGATCTCAGGGCC-TAGGGCCTACCCAAGAAACATCTCAGGGTCGTA
* * *
498968 GGGCCTACCTAAGAATGATCTCAGGGCC-ACGGGACCTACCCAAGAAACATCTTAGGGTTGTA
1 GGGCCTACCCAAGAATGATCTCAGGGCCTA-GGG-CCTACCCAAGAAACATCTCAGGGTCGTA
* * * *
499030 GGGTCTACCCAAGAATGATCTCGGGGCCGTAGAGCCTGCCCAAGA
1 GGGCCTACCCAAGAATGATCTCAGGGCC-TAGGGCCTACCCAAGA
499075 GTCACATTAG
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
60 1 0.01
61 3 0.03
62 83 0.92
63 2 0.02
64 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.27, T:0.17
Consensus pattern (61 bp):
GGGCCTACCCAAGAATGATCTCAGGGCCTAGGGCCTACCCAAGAAACATCTCAGGGTCGTA
Found at i:500153 original size:16 final size:16
Alignment explanation
Indices: 500132--500165 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
500122 TTTTTGAATT
*
500132 TTGGATACATATTGTA
1 TTGGATACATATTATA
500148 TTGGATACATATTATA
1 TTGGATACATATTATA
500164 TT
1 TT
500166 CCATTTAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (16 bp):
TTGGATACATATTATA
Found at i:503701 original size:31 final size:30
Alignment explanation
Indices: 503663--503828 Score: 113
Period size: 31 Copynumber: 5.4 Consensus size: 30
503653 GGGGCCTATG
* *
503663 GGCCTACCCAAGAAAGTTCTCATGGCCACGA
1 GGCCTACCCAAGAAAGATCTCAGGGCCA-GA
** *
503694 GGCCTACCCAAGAAATTTCTCAGGGCCATA
1 GGCCTACCCAAGAAAGATCTCAGGGCCAGA
* * * *
503724 GGGCCTACCCGAGAATGATCTCAGGGCTAAA
1 -GGCCTACCCAAGAAAGATCTCAGGGCCAGA
* * * *
503755 GAGCCTACCCAAGAAAAATCCCATGGTCGC-GG
1 G-GCCTACCCAAGAAAGATCTCA-GGGC-CAGA
*
503787 GGCCTACCCAAGAATGATCTC-GGAGTCGCAGA
1 GGCCTACCCAAGAAAGATCTCAGG-G-C-CAGA
503819 -GCCTACCCAA
1 GGCCTACCCAA
503829 TAGTCACATT
Statistics
Matches: 106, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
29 2 0.02
30 2 0.02
31 97 0.92
32 5 0.05
ACGTcount: A:0.30, C:0.31, G:0.24, T:0.16
Consensus pattern (30 bp):
GGCCTACCCAAGAAAGATCTCAGGGCCAGA
Found at i:503728 original size:62 final size:62
Alignment explanation
Indices: 503654--503770 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 62
503644 GAGCATCTTG
* * *
503654 GGGCCTATGGGCCTACCCAAGAAAGTTCTCATGGCC-ACGAGGCCTACCCAAGAAATTTCTCA
1 GGGCCTATGGGCCTACCCAAGAAAGATCTCAGGGCCAAAGA-GCCTACCCAAGAAATTTCTCA
* * *
503716 GGGCC-ATAGGGCCTACCCGAGAATGATCTCAGGGCTAAAGAGCCTACCCAAGAAA
1 GGGCCTAT-GGGCCTACCCAAGAAAGATCTCAGGGCCAAAGAGCCTACCCAAGAAA
503771 AATCCCATGG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
61 2 0.04
62 42 0.89
63 3 0.06
ACGTcount: A:0.30, C:0.29, G:0.25, T:0.16
Consensus pattern (62 bp):
GGGCCTATGGGCCTACCCAAGAAAGATCTCAGGGCCAAAGAGCCTACCCAAGAAATTTCTCA
Found at i:512228 original size:229 final size:230
Alignment explanation
Indices: 511826--512284 Score: 863
Period size: 229 Copynumber: 2.0 Consensus size: 230
511816 GTGAAGGTCA
511826 GGAAAATCTAAGGAATGAAGGGTGAGAAAGAAGTAAGAGGAAAATGATGAGTTTAATTTTGTTTG
1 GGAAAATCTAAGGAATGAAGGGTGAGAAAGAAGTAAGAGGAAAATGATGAGTTTAATTTTGTTTG
511891 ATTTCATAAAAAACACTGGAAAATATGTCAATTTAAAAATTTTAAAATATATTTAATATTTTTTT
66 ATTTCATAAAAAACACTGGAAAATATGTCAATTTAAAAATTTTAAAATATATTTAATATTTTTTT
511956 TAATTTAAAATCAAATCTCATACCTTAAAATTTTTAATTTTATATTTTATACTCGTAA-TTTTTT
131 TAATTTAAAATCAAATCTCATACCTTAAAATTTTTAATTTTATATTTTATACTCGTAATTTTTTT
512020 ATAGCGTTGTTGATTATGTATGTGAGATCGACAAG
196 ATAGCGTTGTTGATTATGTATGTGAGATCGACAAG
512055 GGAAAATCTAAGGAATGAAGGGTGAGAAAGAAGTAAGAGGAAAATGATGAGTTTAATTTTGTTTG
1 GGAAAATCTAAGGAATGAAGGGTGAGAAAGAAGTAAGAGGAAAATGATGAGTTTAATTTTGTTTG
512120 ATTTCAT-AAAAACACTGGAAAATATGTCAATTT-AAAATTTTAAAATATATTTAATA-TTTTTT
66 ATTTCATAAAAAACACTGGAAAATATGTCAATTTAAAAATTTTAAAATATATTTAATATTTTTTT
512182 TAATTTAAAAATCAAATCTCATACCTTTAAAATTTTTAATTTTTATATTTTATACTCGTAATTTT
131 TAATTT-AAAATCAAATCTCATACC-TTAAAATTTTTAA-TTTTATATTTTATACTCGTAATTTT
512247 TTTATAGCGTTGTTGATTATGTATGTGAGATCGACAAG
193 TTTATAGCGTTGTTGATTATGTATGTGAGATCGACAAG
512285 AAAATAGTTT
Statistics
Matches: 226, Mismatches: 0, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
226 12 0.05
227 41 0.18
228 39 0.17
229 93 0.41
230 41 0.18
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.40
Consensus pattern (230 bp):
GGAAAATCTAAGGAATGAAGGGTGAGAAAGAAGTAAGAGGAAAATGATGAGTTTAATTTTGTTTG
ATTTCATAAAAAACACTGGAAAATATGTCAATTTAAAAATTTTAAAATATATTTAATATTTTTTT
TAATTTAAAATCAAATCTCATACCTTAAAATTTTTAATTTTATATTTTATACTCGTAATTTTTTT
ATAGCGTTGTTGATTATGTATGTGAGATCGACAAG
Found at i:515220 original size:35 final size:35
Alignment explanation
Indices: 515180--515251 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
515170 TTGATTCTAT
*
515180 TTATAATAAGTCATGTCACTTGGTGAATAAATTTA
1 TTATAATAAGTCATGTCACTTGGTGAATAAACTTA
*
515215 TTATAATAAGTCATGTCACTTGGTGAATGAACTTA
1 TTATAATAAGTCATGTCACTTGGTGAATAAACTTA
515250 TT
1 TT
515252 TTTTAGTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (35 bp):
TTATAATAAGTCATGTCACTTGGTGAATAAACTTA
Found at i:515322 original size:21 final size:21
Alignment explanation
Indices: 515298--515374 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
515288 TTCAACAATT
* * *
515298 CTTTCATTAAAAGATTAAATC
1 CTTTCATCAAAAGGTTAAGTC
*
515319 CTTTCA-CGAAAAGGTTAAGCC
1 CTTTCATC-AAAAGGTTAAGTC
*
515340 CTTTCATCAAAAGGCTAAGTC
1 CTTTCATCAAAAGGTTAAGTC
*
515361 CTTTCATCGAAAGG
1 CTTTCATCAAAAGG
515375 ACTTAACCCT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
21 46 0.98
22 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (21 bp):
CTTTCATCAAAAGGTTAAGTC
Found at i:524907 original size:21 final size:21
Alignment explanation
Indices: 524883--524934 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
524873 TATCGCAAAT
524883 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
524904 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
524925 TCGCGTTGCG
1 TCGCGTTGCG
524935 CTTTTCCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:524962 original size:41 final size:41
Alignment explanation
Indices: 524904--524997 Score: 143
Period size: 41 Copynumber: 2.3 Consensus size: 41
524894 TAGTTGAAAA
* *
524904 TCGCGTTGCGATAGTTGAAAATCGCGTTGCGCTTTTCCATT
1 TCGCGTTACGATAGTTGAAAATCGCGTTGCGATTTTCCATT
* *
524945 TCGTGTTACGATAGTTGAAAATGGCGTTGCGATTTTCCATT
1 TCGCGTTACGATAGTTGAAAATCGCGTTGCGATTTTCCATT
*
524986 TCGCGTTGCGAT
1 TCGCGTTACGAT
524998 TTTTCATTTC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.37
Consensus pattern (41 bp):
TCGCGTTACGATAGTTGAAAATCGCGTTGCGATTTTCCATT
Found at i:524993 original size:20 final size:19
Alignment explanation
Indices: 524968--525096 Score: 104
Period size: 19 Copynumber: 6.5 Consensus size: 19
524958 GTTGAAAATG
*
524968 GCGTTGCGATTTTCCATTT
1 GCGTTGCGATTTTCCAATT
* *
524987 CGCGTTGCGATTTTTCATTT
1 -GCGTTGCGATTTTCCAATT
* *
525007 CGTGTTGCGATAGTCTT-CAGTT
1 -GCGTTGCGAT--T-TTCCAATT
525029 GTCGTTGCGATTTTCCAAATT
1 G-CGTTGCGATTTTCC-AATT
525050 -CGTTGCGATTTTCCAAATT
1 GCGTTGCGATTTTCC-AATT
525069 -CGTTGCGATTTTCCAAATT
1 GCGTTGCGATTTTCC-AATT
525088 -CGTTGCGAT
1 GCGTTGCGAT
525097 AGTCTACAGT
Statistics
Matches: 98, Mismatches: 5, Indels: 13
0.84 0.04 0.11
Matches are distributed among these distances:
19 49 0.50
20 30 0.31
21 4 0.04
22 13 0.13
23 2 0.02
ACGTcount: A:0.16, C:0.20, G:0.21, T:0.43
Consensus pattern (19 bp):
GCGTTGCGATTTTCCAATT
Found at i:525002 original size:62 final size:61
Alignment explanation
Indices: 524882--525020 Score: 172
Period size: 62 Copynumber: 2.3 Consensus size: 61
524872 CTATCGCAAA
* *
524882 TTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGCTTTTCCAT
1 TTCGTGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTCAAAATCGCGTTGCGCTTTT-CAT
* * * * ** *
524944 TTCGTGTTACGATAGTTGAAAATGGCGTTGCGAT-TTTCCATTTCGCGTTGCGATTTTTCAT
1 TTCGTGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTCAAAATCGCGTTGCG-CTTTTCAT
525005 TTCGTGTTGCGATAGT
1 TTCGTGTTGCGATAGT
525021 CTTCAGTTGT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
61 31 0.47
62 35 0.53
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.39
Consensus pattern (61 bp):
TTCGTGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTCAAAATCGCGTTGCGCTTTTCAT
Found at i:525054 original size:19 final size:19
Alignment explanation
Indices: 525030--525096 Score: 134
Period size: 19 Copynumber: 3.5 Consensus size: 19
525020 TCTTCAGTTG
525030 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
525049 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
525068 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
525087 TCGTTGCGAT
1 TCGTTGCGAT
525097 AGTCTACAGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (19 bp):
TCGTTGCGATTTTCCAAAT
Found at i:525054 original size:61 final size:60
Alignment explanation
Indices: 524882--525064 Score: 170
Period size: 61 Copynumber: 3.0 Consensus size: 60
524872 CTATCGCAAA
* * * * ** * *
524882 TTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGCTTTTCCAT
1 TTCGTGTTACGATAGTTGAAAATGGCGTTGCGAT-TTTCCAATTC-CGTTGCGATTTTCCAT
* *
524944 TTCGTGTTACGATAGTTGAAAATGGCGTTGCGATTTTCCATTTCGCGTTGCGATTTTTCAT
1 TTCGTGTTACGATAGTTGAAAATGGCGTTGCGATTTTCCAATTC-CGTTGCGATTTTCCAT
* ** ** *
525005 TTCGTGTTGCGATAGTCTTCAGTTGTCGTTGCGATTTTCCAAATT-CGTTGCGATTTTCCA
1 TTCGTGTTACGATAGT-TGAAAATGGCGTTGCGATTTTCC-AATTCCGTTGCGATTTTCCA
525065 AATTCGTTGC
Statistics
Matches: 101, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
61 49 0.49
62 49 0.49
63 3 0.03
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.40
Consensus pattern (60 bp):
TTCGTGTTACGATAGTTGAAAATGGCGTTGCGATTTTCCAATTCCGTTGCGATTTTCCAT
Found at i:525115 original size:22 final size:22
Alignment explanation
Indices: 525087--525140 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
525077 TTTTCCAAAT
525087 TCGTTGCGATAGTCTACAGTTG
1 TCGTTGCGATAGTCTACAGTTG
525109 TCGTTGCGATAGTCTACAGTTG
1 TCGTTGCGATAGTCTACAGTTG
525131 TCGTTGCGAT
1 TCGTTGCGAT
525141 TTTCCAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.37
Consensus pattern (22 bp):
TCGTTGCGATAGTCTACAGTTG
Found at i:525918 original size:19 final size:19
Alignment explanation
Indices: 525894--525964 Score: 61
Period size: 19 Copynumber: 3.4 Consensus size: 19
525884 CAACGAATTT
525894 TCGCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
* **
525913 TCGCAACGACAACTGCTGTAGACTA
1 TCGCAACG--AA-T--T-TGGAAAA
525938 TCGCAACGAATTTGGAAAA
1 TCGCAACGAATTTGGAAAA
525957 TCGCAACG
1 TCGCAACG
525965 GCAAGTGTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
19 20 0.50
20 1 0.03
21 2 0.05
22 2 0.05
23 2 0.05
24 1 0.03
25 12 0.30
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.20
Consensus pattern (19 bp):
TCGCAACGAATTTGGAAAA
Found at i:525944 original size:44 final size:41
Alignment explanation
Indices: 525894--525985 Score: 148
Period size: 44 Copynumber: 2.2 Consensus size: 41
525884 CAACGAATTT
525894 TCGCAACGAATTTGGAAAATCGCAACGACAACTGCTGTAGACTA
1 TCGCAACGAATTTGGAAAATCGCAACGACAA--G-TGTAGACTA
*
525938 TCGCAACGAATTTGGAAAATCGCAACGGCAAGTGTAGACTA
1 TCGCAACGAATTTGGAAAATCGCAACGACAAGTGTAGACTA
525979 TCGCAAC
1 TCGCAAC
525986 ACGAAATGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
41 16 0.34
42 1 0.02
44 30 0.64
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.20
Consensus pattern (41 bp):
TCGCAACGAATTTGGAAAATCGCAACGACAAGTGTAGACTA
Found at i:525997 original size:41 final size:43
Alignment explanation
Indices: 525894--526006 Score: 142
Period size: 44 Copynumber: 2.6 Consensus size: 43
525884 CAACGAATTT
*
525894 TCGCAACGAATTTGGAAAATCGCAACGACAACTGCTGTAGACTA
1 TCGCAACGAATATGGAAAATCGCAACGACAAC-GCTGTAGACTA
* *
525938 TCGCAACGAATTTGGAAAATCGCAACGGCAA-G-TGTAGACTA
1 TCGCAACGAATATGGAAAATCGCAACGACAACGCTGTAGACTA
*
525979 TCGCAACACGAA-ATGAAAAATCGCAACG
1 TCGC-A-ACGAATATGGAAAATCGCAACG
526007 CGATTTTCAA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
41 13 0.20
42 16 0.25
43 5 0.08
44 30 0.47
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (43 bp):
TCGCAACGAATATGGAAAATCGCAACGACAACGCTGTAGACTA
Found at i:534313 original size:27 final size:24
Alignment explanation
Indices: 534267--534317 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
534257 AATTAGTACT
*
534267 TAATGTTATTTAATATAATATTAA
1 TAATCTTATTTAATATAATATTAA
534291 TAATCTTATTATAATACTAAATATTAA
1 TAATCTTATT-TAATA-T-AATATTAA
534318 AATTACATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 9 0.39
25 5 0.22
26 1 0.04
27 8 0.35
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (24 bp):
TAATCTTATTTAATATAATATTAA
Found at i:535739 original size:3 final size:3
Alignment explanation
Indices: 535709--535756 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
535699 TGTAAAATTG
*
535709 TAA TAA TTAA TTA TAA T-A TAA T-A TAA TAA TAA TAA TAA TAA T-A
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
535752 TAA TA
1 TAA TA
535757 CTTATAACGA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 6 0.15
3 30 0.77
4 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:535763 original size:20 final size:19
Alignment explanation
Indices: 535711--535763 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
535701 TAAAATTGTA
535711 ATAATTAATTATAATATAAT
1 ATAA-TAATTATAATATAAT
*
535731 ATAATAATAATAATAATAAT
1 ATAATAATTATAAT-ATAAT
*
535751 ATAATACTTATAA
1 ATAATAATTATAA
535764 CGAATCAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 9 0.31
20 20 0.69
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATAATAATTATAATATAAT
Found at i:536773 original size:121 final size:121
Alignment explanation
Indices: 536559--536801 Score: 486
Period size: 121 Copynumber: 2.0 Consensus size: 121
536549 AAGGCATTCA
536559 TTATAGAATTTTTTATTTTAGTATATATCATTAGTGATATATATCGATGTGTGATATTTTCTCTA
1 TTATAGAATTTTTTATTTTAGTATATATCATTAGTGATATATATCGATGTGTGATATTTTCTCTA
536624 GACTCATCCTTATATACATATATCTTGTTCGAACGTTGGAAAGAAACTTCCACCGG
66 GACTCATCCTTATATACATATATCTTGTTCGAACGTTGGAAAGAAACTTCCACCGG
536680 TTATAGAATTTTTTATTTTAGTATATATCATTAGTGATATATATCGATGTGTGATATTTTCTCTA
1 TTATAGAATTTTTTATTTTAGTATATATCATTAGTGATATATATCGATGTGTGATATTTTCTCTA
536745 GACTCATCCTTATATACATATATCTTGTTCGAACGTTGGAAAGAAACTTCCACCGG
66 GACTCATCCTTATATACATATATCTTGTTCGAACGTTGGAAAGAAACTTCCACCGG
536801 T
1 T
536802 CATACCTAAA
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
121 122 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (121 bp):
TTATAGAATTTTTTATTTTAGTATATATCATTAGTGATATATATCGATGTGTGATATTTTCTCTA
GACTCATCCTTATATACATATATCTTGTTCGAACGTTGGAAAGAAACTTCCACCGG
Found at i:542566 original size:19 final size:20
Alignment explanation
Indices: 542542--542597 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
542532 AAATGACCAA
542542 CAAATTCGCAACGCGATCT-
1 CAAATTCGCAACGCGATCTG
* *
542561 CAAATTCGCAACAC-AGTTTG
1 CAAATTCGCAACGCGA-TCTG
542581 CAAATTCGCAACGCGAT
1 CAAATTCGCAACGCGAT
542598 TTTCCCAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 1 0.03
19 15 0.48
20 14 0.45
21 1 0.03
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (20 bp):
CAAATTCGCAACGCGATCTG
Found at i:542620 original size:42 final size:41
Alignment explanation
Indices: 542542--542675 Score: 127
Period size: 42 Copynumber: 3.3 Consensus size: 41
542532 AAATGACCAA
*
542542 CAAATTCGCAACGCGA---TCTCAAATTCGCAACACAGTTT
1 CAAATTCGCAACGCGATTTTCCCAAATTCGCAACACAGTTT
* *
542580 GCAAATTCGCAACGCGATTTTCCCAAATTTGCAACTCAGTTT
1 -CAAATTCGCAACGCGATTTTCCCAAATTCGCAACACAGTTT
* * *
542622 CTGTAA-TCGCAACGCAATTTT-CCAAATTCGCAACGC-GATTT
1 C--AAATTCGCAACGCGATTTTCCCAAATTCGCAACACAG-TTT
542663 CCAAATTCGCAAC
1 -CAAATTCGCAAC
542676 ACGAAATTTC
Statistics
Matches: 79, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
39 16 0.20
40 3 0.04
41 24 0.30
42 34 0.43
43 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.27
Consensus pattern (41 bp):
CAAATTCGCAACGCGATTTTCCCAAATTCGCAACACAGTTT
Found at i:542665 original size:20 final size:21
Alignment explanation
Indices: 542542--542726 Score: 125
Period size: 20 Copynumber: 9.0 Consensus size: 21
542532 AAATGACCAA
*
542542 CAAATTCGCAACGCGA-TCT-
1 CAAATTCGCAACGCGAGTTTC
* *
542561 CAAATTCGCAACAC-AGTTTG
1 CAAATTCGCAACGCGAGTTTC
*
542581 CAAATTCGCAACGCGATTTTCC
1 CAAATTCGCAACGCGAGTTT-C
* *
542603 CAAATTTGCAACTC-AGTTTC
1 CAAATTCGCAACGCGAGTTTC
** * *
542623 TGTAA-TCGCAACGCAATTTTC
1 -CAAATTCGCAACGCGAGTTTC
542644 CAAATTCGCAACGCGA-TTTC
1 CAAATTCGCAACGCGAGTTTC
* *
542664 CAAATTCGCAACACGAAATTT-
1 CAAATTCGCAACGCG-AGTTTC
* *
542685 CAAATTCGTAACTCGA-TTTC
1 CAAATTCGCAACGCGAGTTTC
** * *
542705 TGAATTCGCAACACAAGTTTC
1 CAAATTCGCAACGCGAGTTTC
542726 C
1 C
542727 TTTTCACAAC
Statistics
Matches: 130, Mismatches: 25, Indels: 20
0.74 0.14 0.11
Matches are distributed among these distances:
18 1 0.01
19 18 0.14
20 53 0.41
21 43 0.33
22 15 0.12
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (21 bp):
CAAATTCGCAACGCGAGTTTC
Found at i:542673 original size:41 final size:41
Alignment explanation
Indices: 542542--542726 Score: 139
Period size: 41 Copynumber: 4.5 Consensus size: 41
542532 AAATGACCAA
* * * *
542542 CAAATTCGCAACGCGA-TCT-CAAATTCGCAACACAGTTTG
1 CAAATTCGCAACGCAATTTTCCAAATTCGCAACTCAGTTTC
* *
542581 CAAATTCGCAACGCGATTTTCCCAAATTTGCAACTCAGTTTC
1 CAAATTCGCAACGCAATTTT-CCAAATTCGCAACTCAGTTTC
** *
542623 TGTAA-TCGCAACGCAATTTTCCAAATTCGCAACGC-GATTTC
1 -CAAATTCGCAACGCAATTTTCCAAATTCGCAACTCAG-TTTC
* * *
542664 CAAATTCGCAACACGAAATTT-CAAATTCGTAACTC-GATTTC
1 CAAATTCGCAACGC-AATTTTCCAAATTCGCAACTCAG-TTTC
** * *
542705 TGAATTCGCAACACAAGTTTCC
1 CAAATTCGCAACGCAATTTTCC
542727 TTTTCACAAC
Statistics
Matches: 120, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
39 16 0.13
40 10 0.08
41 56 0.47
42 36 0.30
43 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (41 bp):
CAAATTCGCAACGCAATTTTCCAAATTCGCAACTCAGTTTC
Found at i:542765 original size:21 final size:21
Alignment explanation
Indices: 542626--542765 Score: 55
Period size: 20 Copynumber: 6.9 Consensus size: 21
542616 CAGTTTCTGT
* *
542626 AATCGCAACGC-AATTTTCCA
1 AATCGCAACACGAATTTTCTA
* *
542646 AATTCGCAACGCG-A-TTTCCA
1 AA-TCGCAACACGAATTTTCTA
*
542666 AATTCGCAACACGAAATTTC-A
1 AA-TCGCAACACGAATTTTCTA
* *
542687 AATTCGTAACTCG-A-TTTCTGA
1 AA-TCGCAACACGAATTTTCT-A
* *
542708 ATTCGCAACAC-AAGTTTCCT-
1 AATCGCAACACGAA-TTTTCTA
** * *
542728 TTTCACAACAAG-ATTTTCTA
1 AATCGCAACACGAATTTTCTA
542748 AATCGCAACACGAATTTT
1 AATCGCAACACGAATTTT
542766 GTTTTAGCAA
Statistics
Matches: 93, Mismatches: 15, Indels: 23
0.71 0.11 0.18
Matches are distributed among these distances:
19 9 0.10
20 46 0.49
21 30 0.32
22 8 0.09
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (21 bp):
AATCGCAACACGAATTTTCTA
Found at i:542812 original size:20 final size:20
Alignment explanation
Indices: 542750--542836 Score: 65
Period size: 20 Copynumber: 4.5 Consensus size: 20
542740 ATTTTCTAAA
**
542750 TCGCAACACGAATTTTGTTT
1 TCGCAACACGAATTTTAATT
* *
542770 TAGCAACTC-AATTTTTGAA-T
1 TCGCAACACGAA-TTTT-AATT
542790 TCGCAACACGAATTTTAATT
1 TCGCAACACGAATTTTAATT
* * *
542810 TCGTAACA-G-CTTTTATTT
1 TCGCAACACGAATTTTAATT
542828 TCGCAACAC
1 TCGCAACAC
542837 AAATGTTTTG
Statistics
Matches: 52, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
18 14 0.27
19 5 0.10
20 31 0.60
21 2 0.04
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (20 bp):
TCGCAACACGAATTTTAATT
Found at i:543790 original size:24 final size:24
Alignment explanation
Indices: 543763--543816 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
543753 GTATTTGAAA
543763 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
543787 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
543811 TTTGAT
1 TTTGAT
543817 GATGTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:546103 original size:18 final size:18
Alignment explanation
Indices: 546080--546115 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
546070 AAGAAAAATG
*
546080 AAATCAAAATCGCAATCA
1 AAATCAAAATCCCAATCA
546098 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
546116 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.25, G:0.03, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:547913 original size:21 final size:21
Alignment explanation
Indices: 547889--547944 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
547879 GTGAATCGGG
* *
547889 CTCTTGAACGGTGGGAGGGGC
1 CTCTTGAACGATGAGAGGGGC
547910 CTCTTGAACGATGAGAGGGGC
1 CTCTTGAACGATGAGAGGGGC
* *
547931 CTCTTAAACAATGA
1 CTCTTGAACGATGA
547945 TAGGTGAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (21 bp):
CTCTTGAACGATGAGAGGGGC
Found at i:548293 original size:63 final size:62
Alignment explanation
Indices: 548238--548360 Score: 149
Period size: 63 Copynumber: 2.0 Consensus size: 62
548228 ACGTAGAGCG
* *
548238 GCTACCTCATCACGTAAAGTA-GATACCTCACCACGTAAAGCACCATTGTCATCACGTAAAACA
1 GCTACCTCACCACGTAAAG-ACG-TACCTCACCACGCAAAGCACCATTGTCATCACGTAAAACA
* * * * *
548301 TCTACCTCACCATGTAAAGACTGTACCTCATCACGCCATGCACCATTGTCATCACGTAAA
1 GCTACCTCACCACGTAAAGAC-GTACCTCACCACGCAAAGCACCATTGTCATCACGTAAA
548361 GTACCGACCT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
62 1 0.02
63 49 0.96
64 1 0.02
ACGTcount: A:0.33, C:0.32, G:0.12, T:0.23
Consensus pattern (62 bp):
GCTACCTCACCACGTAAAGACGTACCTCACCACGCAAAGCACCATTGTCATCACGTAAAACA
Found at i:548375 original size:21 final size:21
Alignment explanation
Indices: 548241--548401 Score: 76
Period size: 21 Copynumber: 7.7 Consensus size: 21
548231 TAGAGCGGCT
* ***
548241 ACCTCATCACGTAAAGTAGAT
1 ACCTCATCACGTAAAGCACCG
*
548262 ACCTCACCACGTAAAGCACC-
1 ACCTCATCACGTAAAGCACCG
** * * *
548282 ATTGTCATCACGTAAAACATCT
1 A-CCTCATCACGTAAAGCACCG
* * *
548304 ACCTCACCATGTAAAG-ACTG
1 ACCTCATCACGTAAAGCACCG
** *
548324 TACCTCATCACGCCATGCACC-
1 -ACCTCATCACGTAAAGCACCG
** *
548345 ATTGTCATCACGTAAAGTACCG
1 A-CCTCATCACGTAAAGCACCG
* * *
548367 ACCTTATCACGCAAAGCACTG
1 ACCTCATCACGTAAAGCACCG
548388 ACCTCATCACGTAA
1 ACCTCATCACGTAA
548402 CTCCCCTAAG
Statistics
Matches: 97, Mismatches: 37, Indels: 12
0.66 0.25 0.08
Matches are distributed among these distances:
20 3 0.03
21 90 0.93
22 4 0.04
ACGTcount: A:0.34, C:0.32, G:0.12, T:0.22
Consensus pattern (21 bp):
ACCTCATCACGTAAAGCACCG
Found at i:548392 original size:63 final size:63
Alignment explanation
Indices: 548277--548398 Score: 156
Period size: 63 Copynumber: 1.9 Consensus size: 63
548267 ACCACGTAAA
* * * *
548277 GCACCATTGTCATCACGTAAAACATCTACCTCACCATGTAAAGACTGTACCTCATCACGCCAT
1 GCACCATTGTCATCACGTAAAACACCGACCTCACCACGCAAAGACTGTACCTCATCACGCCAT
** * *
548340 GCACCATTGTCATCACGTAAAGTACCGACCTTATCACGCAAAGCACTG-ACCTCATCACG
1 GCACCATTGTCATCACGTAAAACACCGACCTCACCACGCAAAG-ACTGTACCTCATCACG
548399 TAACTCCCCT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
63 46 0.92
64 4 0.08
ACGTcount: A:0.31, C:0.34, G:0.13, T:0.22
Consensus pattern (63 bp):
GCACCATTGTCATCACGTAAAACACCGACCTCACCACGCAAAGACTGTACCTCATCACGCCAT
Found at i:550143 original size:20 final size:19
Alignment explanation
Indices: 550115--550154 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
550105 CTTAAATTCA
550115 CAACACGAAAACGAAAATCG
1 CAACACG-AAACGAAAATCG
* *
550135 CAACGCGAAACTAAAATCG
1 CAACACGAAACGAAAATCG
550154 C
1 C
550155 GTTGCGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.50, C:0.28, G:0.15, T:0.07
Consensus pattern (19 bp):
CAACACGAAACGAAAATCG
Found at i:550410 original size:14 final size:14
Alignment explanation
Indices: 550404--550430 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
550394 ATAATAATAC
550404 AAAAATAAAAAAAA
1 AAAAATAAAAAAAA
550418 AAAAATAAAAAAA
1 AAAAATAAAAAAA
550431 CTAATCCTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (14 bp):
AAAAATAAAAAAAA
Found at i:552312 original size:14 final size:14
Alignment explanation
Indices: 552264--552317 Score: 53
Period size: 14 Copynumber: 4.0 Consensus size: 14
552254 TATATTTTTA
552264 AATTTTTTATTGATTT
1 AATTTTTTA-T-ATTT
*
552280 AATTTTTT-TA-GT
1 AATTTTTTATATTT
552292 -A-TTTTTATATTT
1 AATTTTTTATATTT
552304 AATTTTTTATATTT
1 AATTTTTTATATTT
552318 GAATAGTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
10 5 0.16
11 3 0.09
12 2 0.06
13 2 0.06
14 12 0.38
16 8 0.25
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (14 bp):
AATTTTTTATATTT
Done.