Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004578.1 Hibiscus syriacus cultivar Beakdansim tig00010204_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1248949
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 7
Found at i:1074563 original size:41 final size:41
Alignment explanation
Indices: 1074511--1074613 Score: 170
Period size: 41 Copynumber: 2.5 Consensus size: 41
1074501 GTTGCGATTT
*
1074511 CAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTC
1 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
* *
1074552 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATTTT
1 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
*
1074593 CAACTATCGCAATGCGAAATG
1 CAACTATCGCAACGCGAAATG
1074614 CAACGTGATT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (41 bp):
CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
Found at i:1074617 original size:21 final size:21
Alignment explanation
Indices: 1074511--1074617 Score: 92
Period size: 21 Copynumber: 5.2 Consensus size: 21
1074501 GTTGCGATTT
1074511 CAACTATCGCAACGCGAAATG
1 CAACTATCGCAACGCGAAATG
* * ** *
1074532 GAA-AATCGCAACGCGATCTC
1 CAACTATCGCAACGCGAAATG
1074552 CAACTATCGCAACGCGAAATG
1 CAACTATCGCAACGCGAAATG
* * * ** *
1074573 GAA-AAACGCAACGCGATTTT
1 CAACTATCGCAACGCGAAATG
*
1074593 CAACTATCGCAATGCGAAATG
1 CAACTATCGCAACGCGAAATG
1074614 CAAC
1 CAAC
1074618 GTGATTTTGC
Statistics
Matches: 61, Mismatches: 23, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
20 29 0.48
21 32 0.52
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.16
Consensus pattern (21 bp):
CAACTATCGCAACGCGAAATG
Found at i:1074642 original size:142 final size:139
Alignment explanation
Indices: 1074374--1074630 Score: 415
Period size: 142 Copynumber: 1.8 Consensus size: 139
1074364 ACAACTGTAG
* * *
1074374 ACTATCGCACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCAACGCGAAATGGAAAATCA
1 ACTATCGCACGCGAAATGGAAAATCGCAACGCGATCTCCAACTATCAACGCGAAATGGAAAAACA
*
1074439 CAACGCGATTTTCAACTATCGCAACGCGAAATGCAACGCGAATTTGCGATGATTGAAATCGCGTT
66 CAACGCGATTTTCAACTATCGCAACGCGAAATGCAACGCGAATTTGCGATGATGGAAATCGCGTT
1074504 GCGATTTCA
131 GCGATTTCA
1074513 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTCCAACTATCGCAACGCGAAATGGAAAA
1 ACTATCGC-ACGCGAAATGGAAAATCGCAACGCGATCTCCAACTAT--CAACGCGAAATGGAAAA
* * * *
1074578 ACGCAACGCGATTTTCAACTATCGCAATGCGAAATGCAACGTGATTTTGCGAT
63 ACACAACGCGATTTTCAACTATCGCAACGCGAAATGCAACGCGAATTTGCGAT
1074631 AGTGGAGATC
Statistics
Matches: 108, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
139 8 0.07
140 35 0.32
142 65 0.60
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (139 bp):
ACTATCGCACGCGAAATGGAAAATCGCAACGCGATCTCCAACTATCAACGCGAAATGGAAAAACA
CAACGCGATTTTCAACTATCGCAACGCGAAATGCAACGCGAATTTGCGATGATGGAAATCGCGTT
GCGATTTCA
Found at i:1074805 original size:5 final size:5
Alignment explanation
Indices: 1074791--1074821 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
1074781 CCGCCGCCGC
1074791 CGTC- CGTCT CGTCT CGTCT CGTCT CGTCT CG
1 CGTCT CGTCT CGTCT CGTCT CGTCT CGTCT CG
1074822 GGTCGTGGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.00, C:0.42, G:0.23, T:0.35
Consensus pattern (5 bp):
CGTCT
Found at i:1074833 original size:6 final size:6
Alignment explanation
Indices: 1074822--1074881 Score: 99
Period size: 6 Copynumber: 10.5 Consensus size: 6
1074812 TCTCGTCTCG
1074822 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT -G--GT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1074867 GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGT
1074882 AATACGTGTC
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
3 2 0.04
4 1 0.02
5 1 0.02
6 47 0.92
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:1074856 original size:27 final size:27
Alignment explanation
Indices: 1074826--1074881 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
1074816 GTCTCGGGTC
1074826 GTGGTCGTGGTCGTGGTCGTGGTCGTG
1 GTGGTCGTGGTCGTGGTCGTGGTCGTG
1074853 GTGGTCGTGGTCGTGGTCGTGGTCGTG
1 GTGGTCGTGGTCGTGGTCGTGGTCGTG
1074880 GT
1 GT
1074882 AATACGTGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.00, C:0.14, G:0.52, T:0.34
Consensus pattern (27 bp):
GTGGTCGTGGTCGTGGTCGTGGTCGTG
Found at i:1074858 original size:21 final size:21
Alignment explanation
Indices: 1074832--1074875 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
1074822 GGTCGTGGTC
1074832 GTGGTCGTGGTCGTGGTCGTG
1 GTGGTCGTGGTCGTGGTCGTG
1074853 GTGGTCGTGGTCGTGGTCGTG
1 GTGGTCGTGGTCGTGGTCGTG
1074874 GT
1 GT
1074876 CGTGGTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.52, T:0.34
Consensus pattern (21 bp):
GTGGTCGTGGTCGTGGTCGTG
Found at i:1075012 original size:42 final size:41
Alignment explanation
Indices: 1074966--1075091 Score: 155
Period size: 41 Copynumber: 3.0 Consensus size: 41
1074956 TCAACGAATT
1074966 TGGAAAATCGCAACGACAACTGT-AGACTATCGCAACGCGAAA
1 TGGAAAATCGCAACG-CAACTGTCA-ACTATCGCAACGCGAAA
* * *
1075008 TGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAA
1 TGGAAAATCGCAACGCAACTGTCAACTATCGCAACGCGAAA
* * * * *
1075049 TGGAAAATCACAACGCGATTTTCAACTATCGCAACACGAAA
1 TGGAAAATCGCAACGCAACTGTCAACTATCGCAACGCGAAA
1075090 TG
1 TG
1075092 CAACGCGAAT
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
41 62 0.79
42 16 0.21
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.18
Consensus pattern (41 bp):
TGGAAAATCGCAACGCAACTGTCAACTATCGCAACGCGAAA
Found at i:1075036 original size:41 final size:41
Alignment explanation
Indices: 1074991--1075091 Score: 184
Period size: 41 Copynumber: 2.5 Consensus size: 41
1074981 ACAACTGTAG
*
1074991 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCACAACGCGATTTTCA
1075032 ACTATCGCAACGCGAAATGGAAAATCACAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGGAAAATCACAACGCGATTTTCA
*
1075073 ACTATCGCAACACGAAATG
1 ACTATCGCAACGCGAAATG
1075092 CAACGCGAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.19
Consensus pattern (41 bp):
ACTATCGCAACGCGAAATGGAAAATCACAACGCGATTTTCA
Found at i:1075040 original size:21 final size:21
Alignment explanation
Indices: 1075014--1075083 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
1075004 GAAATGGAAA
1075014 ATCGCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
** ** *
1075035 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
*
1075055 ATCACAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
1075076 ATCGCAAC
1 ATCGCAAC
1075084 ACGAAATGCA
Statistics
Matches: 36, Mismatches: 12, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
20 14 0.39
21 22 0.61
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:1075095 original size:21 final size:21
Alignment explanation
Indices: 1074991--1075237 Score: 93
Period size: 20 Copynumber: 12.1 Consensus size: 21
1074981 ACAACTGTAG
*
1074991 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* ** *
1075012 A-AATCGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
*
1075032 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* * ** *
1075053 A-AATCACAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
*
1075073 ACTATCGCAACACGAAATGCA
1 ACTATCGCAACGCGAAATGCA
* * *
1075094 AC--GCG-AATTTGCGATGATTG-A
1 ACTATCGCAA--CGCGA--AATGCA
*** * *
1075115 A--ATCGCGTTGCG-ATTTCA
1 ACTATCGCAACGCGAAATGCA
*
1075133 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* ** *
1075154 A-AATCGCAACGCGATCTCCA
1 ACTATCGCAACGCGAAATGCA
*
1075174 ACTATCGCAACGCGAAATGGA
1 ACTATCGCAACGCGAAATGCA
* * ** *
1075195 A-AAACGCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATGCA
*
1075215 ACTATCGCAATGCGAAATGCA
1 ACTATCGCAACGCGAAATGCA
1075236 AC
1 AC
1075238 GTGATTTTGC
Statistics
Matches: 154, Mismatches: 58, Indels: 28
0.64 0.24 0.12
Matches are distributed among these distances:
17 3 0.02
18 4 0.03
19 2 0.01
20 73 0.47
21 69 0.45
22 3 0.02
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.19
Consensus pattern (21 bp):
ACTATCGCAACGCGAAATGCA
Found at i:1075183 original size:41 final size:41
Alignment explanation
Indices: 1075131--1075233 Score: 170
Period size: 41 Copynumber: 2.5 Consensus size: 41
1075121 GTTGCGATTT
*
1075131 CAACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTC
1 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
* *
1075172 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATTTT
1 CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
*
1075213 CAACTATCGCAATGCGAAATG
1 CAACTATCGCAACGCGAAATG
1075234 CAACGTGATT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (41 bp):
CAACTATCGCAACGCGAAATGGAAAAACGCAACGCGATCTC
Found at i:1075247 original size:142 final size:142
Alignment explanation
Indices: 1074991--1075250 Score: 448
Period size: 142 Copynumber: 1.8 Consensus size: 142
1074981 ACAACTGTAG
* *
1074991 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTCCAACTATCGCAACGCGAAATGGAAAA
*
1075056 TCACAACGCGATTTTCAACTATCGCAACACGAAATGCAACGCGAATTTGCGATGATTGAAATCGC
66 ACACAACGCGATTTTCAACTATCGCAACACGAAATGCAACGCGAATTTGCGATGATTGAAATCGC
1075121 GTTGCGATTTCA
131 GTTGCGATTTCA
1075133 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTCCAACTATCGCAACGCGAAATGGAAAA
1 ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTCCAACTATCGCAACGCGAAATGGAAAA
* ** * *
1075198 ACGCAACGCGATTTTCAACTATCGCAATGCGAAATGCAACGTGATTTTGCGAT
66 ACACAACGCGATTTTCAACTATCGCAACACGAAATGCAACGCGAATTTGCGAT
1075251 AGTGGAGATC
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
142 110 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (142 bp):
ACTATCGCAACGCGAAATGGAAAATCGCAACGCGATCTCCAACTATCGCAACGCGAAATGGAAAA
ACACAACGCGATTTTCAACTATCGCAACACGAAATGCAACGCGAATTTGCGATGATTGAAATCGC
GTTGCGATTTCA
Found at i:1078557 original size:57 final size:57
Alignment explanation
Indices: 1078477--1078591 Score: 185
Period size: 57 Copynumber: 2.0 Consensus size: 57
1078467 TAAAACCATA
* *
1078477 CAACCCCGTCACGAACAGGAAGGCCCTGAGCACAAAGCCGAGGAACCTGTAAGTATT
1 CAACCCCGTCACGAACAGGAAGGCCCTGAGCACAAAACCGAGGAACCTGCAAGTATT
* * *
1078534 CAACCCTGTCATGAACAGTAAGGCCCTGAGCACAAAACCGAGGAACCTGCAAGTATT
1 CAACCCCGTCACGAACAGGAAGGCCCTGAGCACAAAACCGAGGAACCTGCAAGTATT
1078591 C
1 C
1078592 TTCCTCCAAC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.34, C:0.30, G:0.23, T:0.14
Consensus pattern (57 bp):
CAACCCCGTCACGAACAGGAAGGCCCTGAGCACAAAACCGAGGAACCTGCAAGTATT
Found at i:1078677 original size:24 final size:24
Alignment explanation
Indices: 1078650--1078751 Score: 84
Period size: 24 Copynumber: 4.4 Consensus size: 24
1078640 TATATCAAAA
* *
1078650 ATCAAAACATAATTCAGGTCAAGT
1 ATCAAAACAGAATCCAGGTCAAGT
* * *
1078674 ATCATATCAGAATCCAGGTCATGT
1 ATCAAAACAGAATCCAGGTCAAGT
* *
1078698 ATC--ATCAGAATCCATGTCAA-T
1 ATCAAAACAGAATCCAGGTCAAGT
* * *
1078719 ATCATATCAGAATCCAGGTCATGT
1 ATCAAAACAGAATCCAGGTCAAGT
*
1078743 ATCATAACA
1 ATCAAAACA
1078752 AAATTCAAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
21 4 0.06
22 15 0.23
23 15 0.23
24 31 0.48
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (24 bp):
ATCAAAACAGAATCCAGGTCAAGT
Found at i:1091927 original size:15 final size:15
Alignment explanation
Indices: 1091907--1091938 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1091897 ATCAATACCT
1091907 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
1091922 TTTTGCATACATTCA
1 TTTTGCATACATGCA
1091937 TT
1 TT
1091939 ATTCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:1099275 original size:10 final size:9
Alignment explanation
Indices: 1099260--1099325 Score: 62
Period size: 10 Copynumber: 7.0 Consensus size: 9
1099250 CTTGAAGAGA
1099260 AAAAGAAAAG
1 AAAA-AAAAG
*
1099270 AAAAGAAA-
1 AAAAAAAAG
1099278 AAAAAAAAG
1 AAAAAAAAG
*
1099287 AGAGAAAAAG
1 A-AAAAAAAG
1099297 AAAAAAAAAG
1 -AAAAAAAAG
*
1099307 AGAAAAAAG
1 AAAAAAAAG
1099316 AAGAAAAAAG
1 AA-AAAAAAG
1099326 GGGGGTCAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 7 0.15
9 13 0.28
10 25 0.54
11 1 0.02
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:1099280 original size:18 final size:18
Alignment explanation
Indices: 1099254--1099317 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
1099244 ATTATGCTTG
*
1099254 AAGAGAAAAAGAAAAGAA
1 AAGAAAAAAAGAAAAGAA
1099272 AAGAAAAAAA-AAAAG--
1 AAGAAAAAAAGAAAAGAA
* *
1099287 -AGAGAAAAAGAAAAAAA
1 AAGAAAAAAAGAAAAGAA
1099304 AAGAGAAAAAAGAA
1 AAGA-AAAAAAGAA
1099318 GAAAAAAGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
14 8 0.22
15 4 0.11
17 5 0.14
18 12 0.32
19 8 0.22
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (18 bp):
AAGAAAAAAAGAAAAGAA
Found at i:1099286 original size:22 final size:22
Alignment explanation
Indices: 1099259--1099324 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
1099249 GCTTGAAGAG
1099259 AAAAAGAAAAGAAAAGAAAAAA
1 AAAAAGAAAAGAAAAGAAAAAA
*
1099281 AAAAAG-AGAGAAAAAGAAAAAA
1 AAAAAGAAAAG-AAAAGAAAAAA
*
1099303 AAAGAGAAAA-AAGAAGAAAAAA
1 AAAAAGAAAAGAA-AAGAAAAAA
1099325 GGGGGGTCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
21 5 0.13
22 31 0.82
23 2 0.05
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAAGAAAAGAAAAAA
Found at i:1099296 original size:32 final size:32
Alignment explanation
Indices: 1099255--1099319 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
1099245 TTATGCTTGA
*
1099255 AGAGAAAAAGAAAAGAAAAGAAAAAAAAAAAG
1 AGAGAAAAAGAAAAAAAAAGAAAAAAAAAAAG
* *
1099287 AGAGAAAAAGAAAAAAAAAGAGAAAAAAGAAG
1 AGAGAAAAAGAAAAAAAAAGAAAAAAAAAAAG
1099319 A
1 A
1099320 AAAAAGGGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (32 bp):
AGAGAAAAAGAAAAAAAAAGAAAAAAAAAAAG
Found at i:1100610 original size:83 final size:83
Alignment explanation
Indices: 1100478--1101105 Score: 1112
Period size: 83 Copynumber: 7.6 Consensus size: 83
1100468 TGCAATGTAC
* *
1100478 TCATAGCATCTTCTGGAAATGTTCTTTGATTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
1 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
1100543 TTTGAAAGATGAATGTGA
66 TTTGAAAGATGAATGTGA
*
1100561 TCATATCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
1 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
1100626 TTTGAAAGATGAATGTGA
66 TTTGAAAGATGAATGTGA
* *
1100644 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTAGTTTAGTAAAACCAATCATTGAA
1 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
*
1100709 TTTGAAAGATGAATGTGC
66 TTTGAAAGATGAATGTGA
*
1100727 TAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
1 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
1100792 TTTGAAAGATGAATGTGA
66 TTTGAAAGATGAATGTGA
*
1100810 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATTATTGAA
1 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
1100875 TTTGAAAGATGAATGTGA
66 TTTGAAAGATGAATGTGA
1100893 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
1 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
*
1100958 TTTGAAAGATGAATGTGG
66 TTTGAAAGATGAATGTGA
* *
1100976 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTTATCTGGTTTGGTAAAACCAATTATTGAA
1 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
* * *
1101041 TTTGGAAGAGGAATGTGC
66 TTTGAAAGATGAATGTGA
* *
1101059 TAATAGCATCTTCTTGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
1 TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
1101106 ATATGAAACC
Statistics
Matches: 522, Mismatches: 23, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 522 1.00
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (83 bp):
TCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATCATTGAA
TTTGAAAGATGAATGTGA
Found at i:1102242 original size:113 final size:113
Alignment explanation
Indices: 1102044--1102595 Score: 864
Period size: 113 Copynumber: 4.9 Consensus size: 113
1102034 GATTTAAATC
* *
1102044 CATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * * **
1102109 ATAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTTTTGTTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCCTGAATT
* *
1102157 CATCA-TGTGATGGATTAAAATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
1 CATCACT-TGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGG
1102221 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCCTGAATT
65 AAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCCTGAATT
1102270 CATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
*
1102335 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTTCCTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCCTGAATT
* *
1102383 CATCACTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
1 CATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* *
1102448 AGAAGAAGTTCATAATAAGAAGAACTTGTTCAA-CTTTTGCTTGAATT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCCTGAATT
* * * *
1102495 CATCACTTAATGGATCAACCTTTACAGAGAAAGTTCATAATGAGAAGAACTCATCTGAATAA-G-
1 CATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
* * *
1102558 AG-A-AAGTTCATAATAAGAAGAGCTTATTCAACCTTTTG
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTG
1102596 AATGACTCTA
Statistics
Matches: 412, Mismatches: 24, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
108 26 0.06
109 7 0.02
110 2 0.00
111 1 0.00
112 70 0.17
113 305 0.74
114 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (113 bp):
CATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCCTGAATT
Found at i:1102849 original size:15 final size:16
Alignment explanation
Indices: 1102814--1102864 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 16
1102804 TTTTTATTTT
1102814 ATTATTTTATTATAAT-
1 ATTA-TTTATTATAATA
*
1102830 GTTATTTA-TATAATA
1 ATTATTTATTATAATA
*
1102845 ATTA-TTATTATTATA
1 ATTATTTATTATAATA
1102860 ATTAT
1 ATTAT
1102865 AATATTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 9 0.31
15 17 0.59
16 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (16 bp):
ATTATTTATTATAATA
Found at i:1106111 original size:33 final size:32
Alignment explanation
Indices: 1106074--1106194 Score: 171
Period size: 33 Copynumber: 3.9 Consensus size: 32
1106064 CCGAACCAGG
1106074 CCCGAATATCACACTTAAAAAAATCCGATACGA
1 CCCGAATATCACACTTAAAAAAATCCGAT-CGA
*
1106107 CCCGAATATCACACTTAAAAAAACCCGACTCGA
1 CCCGAATATCACACTTAAAAAAATCCGA-TCGA
1106140 CCCGAATATCACACTT-AAAAAA--C--TCGA
1 CCCGAATATCACACTTAAAAAAATCCGATCGA
*
1106167 CCCGAATATCAAACTTAAAAAAATCCGA
1 CCCGAATATCACACTTAAAAAAATCCGA
1106195 CCCGAACCCA
Statistics
Matches: 80, Mismatches: 2, Indels: 13
0.84 0.02 0.14
Matches are distributed among these distances:
27 19 0.24
28 6 0.08
30 2 0.03
32 6 0.08
33 46 0.57
34 1 0.01
ACGTcount: A:0.45, C:0.29, G:0.08, T:0.17
Consensus pattern (32 bp):
CCCGAATATCACACTTAAAAAAATCCGATCGA
Found at i:1106177 original size:60 final size:65
Alignment explanation
Indices: 1106074--1106209 Score: 183
Period size: 60 Copynumber: 2.1 Consensus size: 65
1106064 CCGAACCAGG
* *
1106074 CCCGAATATCACACTTAAAAAAATCCGATACGACCCGAATATCACACTTAAAAAAACCCGACTCG
1 CCCGAATATCACACTTAAAAAAA-CC-ATACGACCCGAATATCAAACTTAAAAAAACCCGACCCG
1106139 -A
64 AA
*
1106140 CCCGAATATCACACTT-AAAAAA-C-T-CGACCCGAATATCAAACTTAAAAAAATCCGACCCGAA
1 CCCGAATATCACACTTAAAAAAACCATACGACCCGAATATCAAACTTAAAAAAACCCGACCCGAA
*
1106201 CCCAAATAT
1 CCCGAATAT
1106210 TTTTTTAAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
60 32 0.49
61 10 0.15
63 1 0.02
65 6 0.09
66 16 0.25
ACGTcount: A:0.45, C:0.30, G:0.08, T:0.17
Consensus pattern (65 bp):
CCCGAATATCACACTTAAAAAAACCATACGACCCGAATATCAAACTTAAAAAAACCCGACCCGAA
Found at i:1106206 original size:27 final size:27
Alignment explanation
Indices: 1106136--1106200 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
1106126 AAAACCCGAC
* * *
1106136 TCGACCCGAATATCACACTTAAAAAAC
1 TCGACCCGAATACCAAACTTAAAAAAA
*
1106163 TCGACCCGAATATCAAACTTAAAAAAA
1 TCGACCCGAATACCAAACTTAAAAAAA
1106190 TCCGACCCGAA
1 T-CGACCCGAA
1106201 CCCAAATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 26 0.74
28 9 0.26
ACGTcount: A:0.45, C:0.29, G:0.09, T:0.17
Consensus pattern (27 bp):
TCGACCCGAATACCAAACTTAAAAAAA
Found at i:1106223 original size:31 final size:30
Alignment explanation
Indices: 1106185--1106243 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
1106175 TCAAACTTAA
1106185 AAAAATCCGACCCGAACCCAAATATTTTTTT
1 AAAAATCCGACCCGAACCCAAA-ATTTTTTT
* * *
1106216 AAAAATCCGACTCGATCCCGAAATTTTT
1 AAAAATCCGACCCGAACCCAAAATTTTT
1106244 AAAAAGAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.29
Consensus pattern (30 bp):
AAAAATCCGACCCGAACCCAAAATTTTTTT
Found at i:1109034 original size:3 final size:3
Alignment explanation
Indices: 1109028--1109078 Score: 77
Period size: 3 Copynumber: 17.0 Consensus size: 3
1109018 AATTATTATT
*
1109028 TAA TAA TAA TAA TAA TAA TAA -ATA TAA TAA TAA TTA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
1109073 TAA TAA
1 TAA TAA
1109079 ATAAAAATAG
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 1 0.02
3 42 0.95
4 1 0.02
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:1109488 original size:119 final size:120
Alignment explanation
Indices: 1109235--1109510 Score: 425
Period size: 119 Copynumber: 2.3 Consensus size: 120
1109225 CTTCTCTTTT
* *
1109235 TTCAGATGAGTTTTTCTCATTATGAACTTTCCGCTGG---GGATGATGCTAATATATCTCCTTCT
1 TTCAGATGAGTTCTTCTCATTATGAACTTT-CTCTGGAAAGGATGATGCTAATATATCTCCTTCT
* * *
1109297 GTGATAAAATTATGTAAAAGGTTGAACAAGCTCTTCTTATTGTGAACTTCTTCTTC
65 GTGATAAAATTATGCAAAAGGTTGAACAAACTCTTCTCATTGTGAACTTCTTCTTC
* * * *
1109353 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGGTTTATGCTAATCTATCTGCTTCTG
1 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGGATGATGCTAATATATCTCCTTCTG
*
1109418 TGATAGAATTATGCAAAAGGTTGAA-AAACTCTTCTCATTGTGAACTTCTTCTTC
66 TGATAAAATTATGCAAAAGGTTGAACAAACTCTTCTCATTGTGAACTTCTTCTTC
1109472 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
1 TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
1109511 TGTTGATCCA
Statistics
Matches: 145, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
117 5 0.03
118 29 0.20
119 66 0.46
120 45 0.31
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (120 bp):
TTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAGGATGATGCTAATATATCTCCTTCTG
TGATAAAATTATGCAAAAGGTTGAACAAACTCTTCTCATTGTGAACTTCTTCTTC
Found at i:1109641 original size:113 final size:112
Alignment explanation
Indices: 1109431--1110106 Score: 801
Period size: 113 Copynumber: 6.0 Consensus size: 112
1109421 TAGAATTATG
* * *
1109431 CAAAAGGTTGAA-AAACTCTTCTCATTGTGAA--CTTCTT-CTTCTTCAGATGAGTTCTTCTCAT
1 CAAAAGGTTAAACAAATTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
1109492 TATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGATGAATTTGAA
66 TATGAACTCTATCTGGAAATGCTGATCCATCAAGTGATGAATTTGAA
* *
1109539 CAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAATTCTTCTCA
1 CAAAAGGTTAAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * *
1109604 TTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGAG
65 TTATGAACTCTATCTGGAAATGCTGATCCATCAAGTGATGAATTTGAA
* *
1109652 TAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAAATGATGAGTTCTTC
1 CAAAAGGTTAAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTC--A-GATGAGTTCTTC
* ** * * **
1109717 TCATTATGAACTCTACCTGGAAATTTTAATCCATCAAATGATGAATTCAAA
62 TCATTATGAACTCTATCTGGAAATGCTGATCCATCAAGTGATGAATTTGAA
1109768 CAAAAAGGTTAAACAAATTCTTCTCATTATG--TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 C-AAAAGGTTAAACAAATTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * *
1109831 TTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA-TTCAA
65 TTATGAACTCTATCTGGAAATGCTGATCCATCAAGTGATGAATTTGAA
* * * * * *
1109878 GCAAAACGTTGAACAAATTCTTCTCATTATGAATTTCTTCTT-TTTCTTTAAATGAGTTCTTCTT
1 -CAAAAGGTTAAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * * * * *
1109942 ATTATGAACTCTTTCTGGCAATGTTAATCCATCAAATAATGAATTTAAA
64 ATTATGAACTCTATCTGGAAATGCTGATCCATCAAGTGATGAATTTGAA
*
1109991 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAATGAGTTCTTC
1 CAAAAGGTTAAACAAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAG---ATGAGTTCTTC
* * *
1110056 TCATTATGAACTCTATCTGGTAATGCTGATCCATCAATTGATGGATTTGAA
62 TCATTATGAACTCTATCTGGAAATGCTGATCCATCAAGTGATGAATTTGAA
1110107 TCTTTGCTAA
Statistics
Matches: 480, Mismatches: 70, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
108 11 0.02
109 16 0.03
110 30 0.06
111 50 0.10
112 99 0.21
113 125 0.26
114 16 0.03
115 1 0.00
116 104 0.22
117 28 0.06
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (112 bp):
CAAAAGGTTAAACAAATTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTCTATCTGGAAATGCTGATCCATCAAGTGATGAATTTGAA
Found at i:1110036 original size:339 final size:338
Alignment explanation
Indices: 1109432--1110098 Score: 942
Period size: 339 Copynumber: 2.0 Consensus size: 338
1109422 AGAATTATGC
* *
1109432 AAAAGGTTGAAAAACTCTTCTCATTGTGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGA
1 AAAAGGTTAAAAAACTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGA
* * * * *
1109497 ACTTTCTCTGGAAATGTTGATCCATCAAGTGATGAATTTGAACAAAAGGTTAAACAAGTTCTTCT
66 ACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTCAACAAAACGTTAAACAAATTCTTCT
*
1109562 CATTATGAACTTCTTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTCGAACTGGAAAAGC
131 CATTATGAACTTCTTCTTCCTTCTTCAAATGAATTCTTCTCATTATGAACTCGAACTGGAAAAGC
* * * * * ** *
1109627 TGATCCATCAAGTGATGGATTTGAGTAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
196 TAATCCATCAAATAATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCT
* **
1109692 TCCTTCTTCAAATGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATTTTAATCCATCAAATG
261 TCCTTCTTCAAATAATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGCTAATCCATCAAATG
1109757 ATGAATTCAAACA
326 ATGAATTCAAACA
* **
1109770 AAAAGGTTAAACAAATTCTTCTCATTATGTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTAT
1 AAAAGGTTAAA-AAACTCTTCTCATTATGAACTTCTT-CTTCTTCAGATGAGTTCTTCTCATTAT
*
1109835 GAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAA-TTCAAGCAAAACGTTGAACAAATTCT
64 GAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTCAA-CAAAACGTTAAACAAATTCT
* * * * * *** *
1109899 TCTCATTATGAATTTCTTCTT-TTTCTTTAAATGAGTTCTTCTTATTATGAACTCTTTCTGGCAA
128 TCTCATTATGAACTTCTTCTTCCTTCTTCAAATGAATTCTTCTCATTATGAACTCGAACTGGAAA
* *
1109963 TGTTAATCCATCAAATAATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCT
193 AGCTAATCCATCAAATAATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCT
* * * *
1110028 TCTTCCTTCTTCAGATAATGAGTTCTTCTCATTATGAACTCTATCTGGTAATGCTGATCCATCAA
258 TCTTCCTTCTTCAAATAATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGCTAATCCATCAA
*
1110093 TTGATG
323 ATGATG
1110099 GATTTGAATC
Statistics
Matches: 287, Mismatches: 39, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
338 10 0.03
339 177 0.62
340 100 0.35
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.38
Consensus pattern (338 bp):
AAAAGGTTAAAAAACTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTATGA
ACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTTCAACAAAACGTTAAACAAATTCTTCT
CATTATGAACTTCTTCTTCCTTCTTCAAATGAATTCTTCTCATTATGAACTCGAACTGGAAAAGC
TAATCCATCAAATAATGAATTTAAACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCT
TCCTTCTTCAAATAATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGCTAATCCATCAAATG
ATGAATTCAAACA
Found at i:1111066 original size:91 final size:91
Alignment explanation
Indices: 1110921--1111199 Score: 506
Period size: 91 Copynumber: 3.0 Consensus size: 91
1110911 CTTTCAAATC
*
1110921 CAATGATTGGTTTTTGTGGTTCATACCAAACCAGATCAGATAAATCAAAGAACACTTCCAGAAGA
1 CAATGATTGG--TTTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGA
1110986 TGCTATGAGCACATTCATCTTCCAATTT
64 TGCTATGAGCACATTCATCTTCCAATTT
1111014 CAATGATTGGTTTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATG
1 CAATGATTGGTTTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATG
1111079 CTATGAGCACATTCATCTTCCAATTT
66 CTATGAGCACATTCATCTTCCAATTT
*
1111105 AAATGATTGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGAT
1 CAATGATTGGTT-TGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGAT
1111170 GCTATGAGCACATTCATCTTCCAA-TT
65 GCTATGAGCACATTCATCTTCCAATTT
1111196 CAAT
1 CAAT
1111200 CTGATAAGGT
Statistics
Matches: 182, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
91 96 0.53
92 76 0.42
93 10 0.05
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.29
Consensus pattern (91 bp):
CAATGATTGGTTTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATG
CTATGAGCACATTCATCTTCCAATTT
Found at i:1112195 original size:9 final size:8
Alignment explanation
Indices: 1112178--1112239 Score: 61
Period size: 9 Copynumber: 7.0 Consensus size: 8
1112168 CTTGACCCCC
1112178 TTTTTCTT
1 TTTTTCTT
1112186 TTTCTTCTT
1 TTT-TTCTT
1112195 TTTTTCCTT
1 TTTTT-CTT
*
1112204 TCTTTCTTTT
1 T-TTT-TCTT
1112214 TTTTTCTTT
1 TTTTTC-TT
1112223 TTTTTCTT
1 TTTTTCTT
1112231 TCTTTTCTT
1 T-TTTTCTT
1112240 CAAGCATAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
8 9 0.20
9 30 0.65
10 6 0.13
11 1 0.02
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTCTT
Found at i:1112220 original size:27 final size:26
Alignment explanation
Indices: 1112180--1112235 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 26
1112170 TGACCCCCTT
1112180 TTTCTTTTTCTTCTTTTTTTCCTTTC
1 TTTCTTTTTCTTCTTTTTTTCCTTTC
* *
1112206 TTTCTTTTTTTTTCTTTTTTTTCTTTC
1 TTTC-TTTTTCTTCTTTTTTTCCTTTC
1112233 TTT
1 TTT
1112236 TCTTCAAGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (26 bp):
TTTCTTTTTCTTCTTTTTTTCCTTTC
Found at i:1119406 original size:15 final size:15
Alignment explanation
Indices: 1119383--1119414 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1119373 GAATAATAAT
1119383 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
1119398 AATGCATGTATGCAA
1 AATGAATGTATGCAA
1119413 AA
1 AA
1119415 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:1122732 original size:32 final size:28
Alignment explanation
Indices: 1122696--1122790 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 28
1122686 AAATACTTGC
1122696 AAATAAAATGAAATATTAATAAGAAAATATAT
1 AAATAAAATGAAA-A-TAATAAG--AATATAT
** *
1122728 AAATACTATGAAAATAATAAGTATATAT
1 AAATAAAATGAAAATAATAAGAATATAT
*
1122756 AAA-AAAATTTGAAAA-GA-AAGAAT-TAT
1 AAATAAAA--TGAAAATAATAAGAATATAT
1122782 AAATAAAAT
1 AAATAAAAT
1122791 ATATGAATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 13
0.73 0.10 0.18
Matches are distributed among these distances:
25 1 0.02
26 6 0.11
27 11 0.21
28 10 0.19
29 6 0.11
30 7 0.13
31 1 0.02
32 11 0.21
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.27
Consensus pattern (28 bp):
AAATAAAATGAAAATAATAAGAATATAT
Found at i:1124851 original size:3 final size:3
Alignment explanation
Indices: 1124845--1124904 Score: 86
Period size: 3 Copynumber: 20.0 Consensus size: 3
1124835 AATTATTATT
*
1124845 TAA TAA TAA TAA TAA TAA TAA TAA -ATA TAA TAA TAA TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
*
1124890 TTA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
1124905 ATAAAAATGG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
2 1 0.02
3 49 0.96
4 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:1128391 original size:23 final size:23
Alignment explanation
Indices: 1128363--1128419 Score: 105
Period size: 23 Copynumber: 2.5 Consensus size: 23
1128353 ATAAATCCAA
1128363 ACAAATTCAAAGTCAATCAATCC
1 ACAAATTCAAAGTCAATCAATCC
*
1128386 ACAAATTCAAAGTCAATTAATCC
1 ACAAATTCAAAGTCAATCAATCC
1128409 ACAAATTCAAA
1 ACAAATTCAAA
1128420 CATTCTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.51, C:0.23, G:0.04, T:0.23
Consensus pattern (23 bp):
ACAAATTCAAAGTCAATCAATCC
Found at i:1130423 original size:23 final size:21
Alignment explanation
Indices: 1130393--1130450 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 21
1130383 TTCCCCTGTG
1130393 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCC-TC-AA
1130416 GGGGGAATCGGTT-CCCTCAA
1 GGGGGAATCGGTTCCCCTCAA
*
1130436 GGGGG-ATCGATTCCC
1 GGGGGAATCGGTTCCC
1130451 TCTGCACCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 6 0.18
20 9 0.27
21 2 0.06
22 3 0.09
23 13 0.39
ACGTcount: A:0.19, C:0.26, G:0.34, T:0.21
Consensus pattern (21 bp):
GGGGGAATCGGTTCCCCTCAA
Found at i:1139446 original size:28 final size:28
Alignment explanation
Indices: 1139415--1139470 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
1139405 TGAACGTAAC
*
1139415 AATGATGTTGAGCATACTTAGAAGTGGT
1 AATGATGTTGAGCACACTTAGAAGTGGT
*
1139443 AATGATTTTGAGCACACTTAGAAGTGGT
1 AATGATGTTGAGCACACTTAGAAGTGGT
1139471 GAGATGATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (28 bp):
AATGATGTTGAGCACACTTAGAAGTGGT
Found at i:1139533 original size:29 final size:29
Alignment explanation
Indices: 1139493--1139599 Score: 124
Period size: 29 Copynumber: 3.7 Consensus size: 29
1139483 GAACATAGTC
*
1139493 GAGCACATTTCTTAAAAGTGGCGAATATT
1 GAGCACACTTCTTAAAAGTGGCGAATATT
* * *
1139522 GAGCGCACTTCTTGAAAGTGGTGAATATT
1 GAGCACACTTCTTAAAAGTGGCGAATATT
* * *
1139551 GAGCACACTTCTTAAAAGTTGCAAATACT
1 GAGCACACTTCTTAAAAGTGGCGAATATT
* * *
1139580 AAGCTCGCTTCTTAAAAGTG
1 GAGCACACTTCTTAAAAGTG
1139600 ACAAGTCTCA
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.30
Consensus pattern (29 bp):
GAGCACACTTCTTAAAAGTGGCGAATATT
Found at i:1139852 original size:36 final size:36
Alignment explanation
Indices: 1139808--1139941 Score: 144
Period size: 36 Copynumber: 3.7 Consensus size: 36
1139798 GGGTACTCTT
*
1139808 TCTTGGGAGTGGGTTTAGAGATTCTTGAGCTCACTC
1 TCTTGGGAGTGGCTTTAGAGATTCTTGAGCTCACTC
* * *
1139844 TTTTGGGAGTGGCTTTCGAGATTTTTGAGCTCACTC
1 TCTTGGGAGTGGCTTTAGAGATTCTTGAGCTCACTC
* * * *
1139880 TCTTGGGAGCGGCTTTGGAAATTCTTGAGCTTACT-
1 TCTTGGGAGTGGCTTTAGAGATTCTTGAGCTCACTC
** * *
1139915 TACTTGAAAGTGGCTATGGAGATTCTT
1 T-CTTGGGAGTGGCTTTAGAGATTCTT
1139942 TGGAAGGCGC
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
35 1 0.01
36 81 0.99
ACGTcount: A:0.18, C:0.16, G:0.28, T:0.38
Consensus pattern (36 bp):
TCTTGGGAGTGGCTTTAGAGATTCTTGAGCTCACTC
Found at i:1141494 original size:16 final size:16
Alignment explanation
Indices: 1141461--1141510 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
1141451 GGGTTTTTAA
* * *
1141461 GTTTGAAGGTTTGGAG
1 GTTTGAAGATCTGAAG
1141477 GTTTGAAGATCTGAAG
1 GTTTGAAGATCTGAAG
* *
1141493 GTTTAAAGATCCGAAG
1 GTTTGAAGATCTGAAG
1141509 GT
1 GT
1141511 GGCATGCTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.28, C:0.06, G:0.34, T:0.32
Consensus pattern (16 bp):
GTTTGAAGATCTGAAG
Found at i:1142057 original size:22 final size:21
Alignment explanation
Indices: 1141998--1142057 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
1141988 TATTTTATTC
*
1141998 TTATCTTAATTTTAAAATATATT
1 TTATCTT-ATTTT-AAATATATA
* *
1142021 TTATTCGTATCTTAAATATATA
1 TTA-TCTTATTTTAAATATATA
1142043 TTATCCTTATTTTAA
1 TTAT-CTTATTTTAA
1142058 CTTTAAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
21 1 0.03
22 19 0.63
23 7 0.23
24 3 0.10
ACGTcount: A:0.35, C:0.08, G:0.02, T:0.55
Consensus pattern (21 bp):
TTATCTTATTTTAAATATATA
Found at i:1142072 original size:29 final size:29
Alignment explanation
Indices: 1142034--1142089 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
1142024 TTCGTATCTT
1142034 AAATATATATTATCCTTATTTTAACTTTA
1 AAATATATATTATCCTTATTTTAACTTTA
**
1142063 AAATATATATTATTTTTATTTTAACTT
1 AAATATATATTATCCTTATTTTAACTT
1142090 GAGAGTGTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (29 bp):
AAATATATATTATCCTTATTTTAACTTTA
Found at i:1142254 original size:2 final size:2
Alignment explanation
Indices: 1142247--1142676 Score: 462
Period size: 2 Copynumber: 218.5 Consensus size: 2
1142237 AGAAGAGAAG
* * *
1142247 GA GA GA GA GA -A GA GA GA GA GG GA GA GA GA GA TA GA GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
1142288 GA GA GA GA TA GA GA GA GA GA GA GA GG GA GA GG GA GA GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
1142330 AA GG GA GA GA GA G- GA GA GA GG GA GA GA GA GG GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
1142371 GA GA GA GG GA GG GA GA GA GA GG GA GA GA G- GA GA GG GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* *
1142412 GA G- GA GA GA GA GA GG GA GA GA GA GA GA GA GG GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
1142453 GG GA GA GA GA GA GA GA -A G- GA GG GA GG GA CG- GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA -GA GA GA GA GA GA
* * * * * * * *
1142493 GA GA GG GA GA GG GA GA GA GA GA GG GG GA GG GG GA GG GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
1142535 AA GA GA GG GA GA GG GG GA AA GG GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1142577 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
1142619 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GC GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* *
1142661 G- GG GG GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA G
1142677 CTCTCCTAAT
Statistics
Matches: 356, Mismatches: 63, Indels: 18
0.81 0.14 0.04
Matches are distributed among these distances:
1 8 0.02
2 347 0.97
3 1 0.00
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (2 bp):
GA
Found at i:1144352 original size:30 final size:30
Alignment explanation
Indices: 1144274--1144362 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 30
1144264 CATAGATAAC
* * *
1144274 ATAAAATACATTTTTTAAGTTAAGATAAAAA
1 ATAAAATATATTTTTAAAGTTAAAAT-AAAA
*
1144305 ATAAAATATATTTTTAAAGTTAAAATAAGA
1 ATAAAATATATTTTTAAAGTTAAAATAAAA
* **
1144335 ATAAAATTTATTTTTAAAAATAAAATAA
1 ATAAAATATATTTTTAAAGTTAAAATAA
1144363 TATATAACAA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 28 0.55
31 23 0.45
ACGTcount: A:0.57, C:0.01, G:0.04, T:0.37
Consensus pattern (30 bp):
ATAAAATATATTTTTAAAGTTAAAATAAAA
Found at i:1150483 original size:13 final size:14
Alignment explanation
Indices: 1150459--1150488 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
1150449 TTTAGTAATT
1150459 TTAAGATTTTGAAA
1 TTAAGATTTTGAAA
1150473 TTAAG-TTTTGAAA
1 TTAAGATTTTGAAA
1150486 TTA
1 TTA
1150489 CTCCCCCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
TTAAGATTTTGAAA
Found at i:1150527 original size:16 final size:17
Alignment explanation
Indices: 1150502--1150535 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1150492 CCCCTTACTA
1150502 TAACACTTCTCCC-CTT
1 TAACACTTCTCCCACTT
*
1150518 TAACATTTCTCCCACTT
1 TAACACTTCTCCCACTT
1150535 T
1 T
1150536 TTGTTAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.21, C:0.38, G:0.00, T:0.41
Consensus pattern (17 bp):
TAACACTTCTCCCACTT
Found at i:1151166 original size:18 final size:18
Alignment explanation
Indices: 1151143--1151183 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
1151133 AGGCATTTGA
1151143 TCCTCTGGTCGTGCTTGT
1 TCCTCTGGTCGTGCTTGT
*
1151161 TCCTCTGGTTGTGCTTGT
1 TCCTCTGGTCGTGCTTGT
1151179 TCCTC
1 TCCTC
1151184 GTGCTGTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.00, C:0.29, G:0.24, T:0.46
Consensus pattern (18 bp):
TCCTCTGGTCGTGCTTGT
Found at i:1152442 original size:22 final size:23
Alignment explanation
Indices: 1152397--1152456 Score: 77
Period size: 23 Copynumber: 2.7 Consensus size: 23
1152387 TTCCCCTATA
*
1152397 GGGGAATCAGTTCCCCTTCAAAG
1 GGGGAATCGGTTCCCCTTCAAAG
*
1152420 GGGGAATCGGTTCCCCTT-TAAG
1 GGGGAATCGGTTCCCCTTCAAAG
* *
1152442 GGGGTATCGATTCCC
1 GGGGAATCGGTTCCC
1152457 TCTGCACTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
22 16 0.48
23 17 0.52
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (23 bp):
GGGGAATCGGTTCCCCTTCAAAG
Found at i:1152457 original size:21 final size:22
Alignment explanation
Indices: 1152377--1152456 Score: 76
Period size: 22 Copynumber: 3.7 Consensus size: 22
1152367 AGAACCCCCA
* *
1152377 GGGGTATCGATTCCCCTAT-A-
1 GGGGAATCGATTCCCCTTTAAG
*
1152397 GGGGAATC-AGTTCCCCTTCAAAG
1 GGGGAATCGA-TTCCCCTT-TAAG
*
1152420 GGGGAATCGGTTCCCCTTTAAG
1 GGGGAATCGATTCCCCTTTAAG
*
1152442 GGGGTATCGATTCCC
1 GGGGAATCGATTCCC
1152457 TCTGCACTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
19 1 0.02
20 14 0.29
22 17 0.35
23 16 0.33
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (22 bp):
GGGGAATCGATTCCCCTTTAAG
Found at i:1158900 original size:139 final size:138
Alignment explanation
Indices: 1158539--1159023 Score: 493
Period size: 139 Copynumber: 3.5 Consensus size: 138
1158529 GGACCTAGGG
* ** * * *
1158539 AATTTAACCTAAAAGTTCAGGCTCTAATT-TTAATCCTAATAATTTTTAATAAATTGTTG-AA-T
1 AATTAAACCTAAAA-TGGAGGCTCTAATTATTAATCCTATTAA-TTTTAATCAATT-ATGCAATT
* ** * * * *
1158601 CGAATAATCAAAATGGAACCTCGAGCATTAGCGAAGACCGAATAAAAAATTCTCCTAGA-TTAAA
63 CGAATAATTAAAATGGAACCTCGAGCAAAAGCGAGGACC-AATTAAAAATTCACCTAAATTTAAA
*
1158665 GGGCTAAGTTTGA
127 -GACTAAGTTTGA
* * * *
1158678 AAGTAAACCTAAGACGGAGGCTCTAAATATTAA-CCTATTCAAATTTTAATCAATTATGCAATTC
1 AATTAAACCTAAAATGGAGGCTCTAATTATTAATCCTATT--AATTTTAATCAATTATGCAATTC
*
1158742 GAATAATTAAAATGGAACCTTGAGCAAAAGCGAGGACCAACTTAAAATATTCACCTAAATTTAAA
64 GAATAATTAAAATGGAACCTCGAGCAAAAGCGAGGACCAA-TTAAAA-ATTCACCTAAATTTAAA
1158807 GACTAAGTTT-A
127 GACTAAGTTTGA
1158818 AATTAAACCTAAAATGGAGGCTCTAATTATT-ATCCTACTTAATTTTAATCAATTATGCAATTCG
1 AATTAAACCTAAAATGGAGGCTCTAATTATTAATCCTA-TTAATTTTAATCAATTATGCAATTCG
* * * * * *
1158882 AATAATTAAAATGAAACCTCAAGCCAAAA-TGAGGAACAATTTAAGAATTCACCTAAATTTAAGG
65 AATAATTAAAATGGAACCTCGAG-CAAAAGCGAGGACCAA-TTAAAAATTCACCTAAATTTAAAG
** *
1158946 TTTAAATTTGA
128 ACTAAGTTTGA
* * * * *
1158957 AATTAAACATAAAGTGAAGGTTCTAA-TATTAATCCTTATTAATTTTAATCAATTATGCAATTTG
1 AATTAAACCTAAAATGGAGGCTCTAATTATTAATCC-TATTAATTTTAATCAATTATGCAATTCG
1159021 AAT
65 AAT
1159024 CTAAATTAAA
Statistics
Matches: 293, Mismatches: 39, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
138 44 0.15
139 143 0.49
140 81 0.28
141 20 0.07
142 5 0.02
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (138 bp):
AATTAAACCTAAAATGGAGGCTCTAATTATTAATCCTATTAATTTTAATCAATTATGCAATTCGA
ATAATTAAAATGGAACCTCGAGCAAAAGCGAGGACCAATTAAAAATTCACCTAAATTTAAAGACT
AAGTTTGA
Found at i:1159179 original size:20 final size:20
Alignment explanation
Indices: 1159142--1159179 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1159132 GGTTTAATCT
*
1159142 AAAGACCTAAATAGACTATC
1 AAAGACCTAAATAAACTATC
1159162 AAAGA-CTAAATTAAACTA
1 AAAGACCTAAA-TAAACTA
1159180 AATTAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.55, C:0.16, G:0.08, T:0.21
Consensus pattern (20 bp):
AAAGACCTAAATAAACTATC
Found at i:1159735 original size:20 final size:23
Alignment explanation
Indices: 1159710--1159752 Score: 65
Period size: 20 Copynumber: 2.0 Consensus size: 23
1159700 TATACTAAAA
1159710 CATAAA-AA-CAGTGA-ACAAAT
1 CATAAATAAGCAGTGACACAAAT
1159730 CATAAATAAGCAGTGACACAAAT
1 CATAAATAAGCAGTGACACAAAT
1159753 GAATAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 2 0.10
22 6 0.30
23 6 0.30
ACGTcount: A:0.56, C:0.16, G:0.12, T:0.16
Consensus pattern (23 bp):
CATAAATAAGCAGTGACACAAAT
Found at i:1159758 original size:24 final size:21
Alignment explanation
Indices: 1159711--1159760 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
1159701 ATACTAAAAC
*
1159711 ATAAA-AACAGTGAACAAATC
1 ATAAATAACAGTGAACAAATA
1159731 ATAAATAAGCAGTGACACAAATGA
1 ATAAATAA-CAGTGA-ACAAAT-A
1159755 ATAAAT
1 ATAAAT
1159761 TGCAACTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 5 0.20
21 2 0.08
22 6 0.24
23 6 0.24
24 6 0.24
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (21 bp):
ATAAATAACAGTGAACAAATA
Found at i:1162161 original size:3 final size:3
Alignment explanation
Indices: 1162153--1162441 Score: 173
Period size: 3 Copynumber: 95.3 Consensus size: 3
1162143 ATATATTTGA
* * * *
1162153 AAT AAT AAT AAT ATT AAT AAT AAAT AAG AGT AAT AAT AA- AAT AAC
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
1162198 ATT AAAT AAT AAT TAT AAT AAT AAT AA- AAT AAT AAA AACA AAT AAT
1 AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
* * * *
1162244 AAAT GAT AAT AAT TAT AAT AAT -AC AAT AAT AAT AA- AAT GAT AA-
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
1162287 AGGAT AATT AAT AAT AAT AA- AGT AAT AGT AA- AAT GAT AGT GAT AAC
1 A--AT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
1162333 AAT AAT AAAT AAT AGT AA- AAT AAT AAAT AAA AAT AAAT AAA AAT AAT
1 AAT AAT -AAT AAT AAT AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AAT
* * * * *
1162380 AAT AGT AAT ATAT ATT AAT AAAT AAT AAT AGT AGT AA- AAT GAT AAT
1 AAT AAT AAT A-AT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
1162426 AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT A
1162442 GAATATGGTA
Statistics
Matches: 217, Mismatches: 48, Indels: 42
0.71 0.16 0.14
Matches are distributed among these distances:
2 15 0.07
3 171 0.79
4 30 0.14
5 1 0.00
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:1162186 original size:16 final size:16
Alignment explanation
Indices: 1162153--1162192 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
1162143 ATATATTTGA
* *
1162153 AATAAT-AATAATATT
1 AATAATAAATAAGAGT
1162168 AATAATAAATAAGAGT
1 AATAATAAATAAGAGT
1162184 AATAATAAA
1 AATAATAAA
1162193 ATAACATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (16 bp):
AATAATAAATAAGAGT
Found at i:1162206 original size:46 final size:43
Alignment explanation
Indices: 1162156--1162446 Score: 147
Period size: 43 Copynumber: 6.6 Consensus size: 43
1162146 TATTTGAAAT
*
1162156 AATAATAATATTAATAATAAATAAGAGTAATAATAAAATAACATTA
1 AATAATAATATTAATAAT-AATAA-A-TAATAATAAAATAACAATA
*
1162202 AATAATAAT-TATAATAATAATAAAATAATAA-AAACA-AATAATA
1 AATAATAATAT-TAATAATAAT-AAATAATAATAAA-ATAACAATA
* *
1162245 AATGATAATAATT-ATAATAATACAATAATAATAAAATGATAAAGGATA
1 AATAATAAT-ATTAATAATAATA-AATAATAATAAAAT-A-ACA--ATA
* * * * **
1162293 ATTAATAATAATAA-AGTAATAGTAA-AATGATAGTGATAACAAT-
1 AATAATAATATTAATAATAATA--AATAATAATA-AAATAACAATA
* * *
1162336 AATAAATAATAGTAA-AATAATAAATAAAAAT-AAATAAAAAT-
1 AAT-AATAATATTAATAATAATAAATAATAATAAAATAACAATA
* * * * *
1162377 AATAATAGTAATATATATTAATAAATAATAATAGTAGTAA-AAT-
1 AATAATAATATTA-ATAATAATAAATAATAATA-AAATAACAATA
* *
1162420 GATAATAATAATAATAATAATAGAATA
1 AATAATAATATTAATAATAATA-AATA
1162447 TGGTAAAAAA
Statistics
Matches: 193, Mismatches: 30, Indels: 47
0.71 0.11 0.17
Matches are distributed among these distances:
40 8 0.04
41 11 0.06
42 25 0.13
43 57 0.30
44 33 0.17
45 7 0.04
46 22 0.11
47 15 0.08
48 15 0.08
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (43 bp):
AATAATAATATTAATAATAATAAATAATAATAAAATAACAATA
Found at i:1162245 original size:49 final size:48
Alignment explanation
Indices: 1162152--1162280 Score: 122
Period size: 46 Copynumber: 2.7 Consensus size: 48
1162142 GATATATTTG
* * * ** *
1162152 AAATAATAATAATATTAATAAT-AAATAAGAGTAATAATAAAATAACATT
1 AAATAATAATTATAATAATAATAAAATAATAAAAACAATAAAATAA-A-T
*
1162201 AAATAATAATTATAATAATAATAAAATAATAAAAACAA-ATAATAAAT
1 AAATAATAATTATAATAATAATAAAATAATAAAAACAATAAAATAAAT
* *
1162248 -GATAATAATTATAATAATACA-ATAATAATAAAA
1 AAATAATAATTATAATAATA-ATAAAATAATAAAA
1162281 TGATAAAGGA
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
46 29 0.42
47 2 0.03
48 1 0.01
49 26 0.38
50 11 0.16
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (48 bp):
AAATAATAATTATAATAATAATAAAATAATAAAAACAATAAAATAAAT
Found at i:1162389 original size:126 final size:131
Alignment explanation
Indices: 1162165--1162407 Score: 299
Period size: 126 Copynumber: 1.9 Consensus size: 131
1162155 TAATAATAAT
* *
1162165 ATTAATAATAAATAAGAGTAATAATAAAATAACATTAAATAATAATTATAATAATAATAAAATAA
1 ATTAATAATAAATAAGAGTAATAATAAAATAACATGAAACAATAATTATAATAATAATAAAATAA
*
1162230 TAAAAACAAATAATAAATGATAATAATTATAATA-ATA-CAAT-AATAATAAAATGATAAAGGAT
66 TAAAAACAAATAATAAATAATAATAATTATAATATATATCAATAAATAATAAAATGATAAAGGAT
1162292 A
131 A
* * * *
1162293 ATTAATAAT-AATAA-AGTAATAGTAAAATGATAGTGATAACAATAA-TA-AATAATAGTAAAAT
1 ATTAATAATAAATAAGAGTAATAATAAAATAACA-TGA-AACAATAATTATAATAATAATAAAAT
*
1162354 AATAAATAA-AAATAAATAAA-AATAATAA-TAGTAATATATATTAATAAATAATAA
64 AATAAA-AACAAAT-AATAAATAATAATAATTA-TAATATATATCAATAAATAATAA
1162408 TAGTAGTAAA
Statistics
Matches: 99, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
125 2 0.02
126 50 0.51
127 20 0.20
128 19 0.19
129 8 0.08
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (131 bp):
ATTAATAATAAATAAGAGTAATAATAAAATAACATGAAACAATAATTATAATAATAATAAAATAA
TAAAAACAAATAATAAATAATAATAATTATAATATATATCAATAAATAATAAAATGATAAAGGAT
A
Found at i:1162442 original size:32 final size:32
Alignment explanation
Indices: 1162295--1162441 Score: 131
Period size: 29 Copynumber: 4.5 Consensus size: 32
1162285 AAAGGATAAT
* *
1162295 TAATAATAATAA-AGTAATAGTAAAATGATAG
1 TAATAATAATAATAATAATAGTAAAATGATAA
* * *
1162326 TGATAACAATAATAAATAATAGTAAAATAATAAA
1 TAATAATAATAAT-AATAATAGTAAAATGAT-AA
* * *
1162360 TAAAAATAAATAAAAATAATAATAGTAATAT-ATAT
1 T---AAT-AATAATAATAATAATAGTAAAATGATAA
*
1162395 TAAT-A-AATAATAATAGTAGTAAAATGATAA
1 TAATAATAATAATAATAATAGTAAAATGATAA
1162425 TAATAATAATAATAATA
1 TAATAATAATAATAATA
1162442 GAATATGGTA
Statistics
Matches: 92, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
29 17 0.18
30 8 0.09
31 11 0.12
32 13 0.14
33 15 0.16
34 2 0.02
35 2 0.02
36 2 0.02
37 15 0.16
38 7 0.08
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.30
Consensus pattern (32 bp):
TAATAATAATAATAATAATAGTAAAATGATAA
Found at i:1162926 original size:119 final size:119
Alignment explanation
Indices: 1162561--1163099 Score: 723
Period size: 118 Copynumber: 4.5 Consensus size: 119
1162551 CTGAGCTACG
* * * *
1162561 AGTTCTTCTCATTATAAACTTCTTC-CTCCTCTTCAGATGAATTCTTCTCATTATGATC-CATTC
1 AGTTCTTCTCATTATGAACTTCTTCTC-CCTCTTCGGATGAGTTCTTCTCATTATGAACTC-TTC
* * * * *
1162624 CATCGAAAAAATGACGATCCATCTCCTTCTGT-AGTGGACTTGAGTAAAAGGTCGAACA
64 CATTG--GAAATGACGATCCACCTCATTCTGTGA-TGGATTTGAGTAAAAGGTCGAACA
* * *
1162682 AGTTCTTCTCACTATGAACTTCTTCTCCCTTTTCGGATGAGTTCTTCTTA-TATGAACTCTT-CA
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTCTCATTATGAACTCTTCCA
* *
1162745 TTGGAAATGACGATCCACCTCATTCTATGATGAATTTGAGTAAAAGGTCGAACA
66 TTGGAAATGACGATCCACCTCATTCTGTGATGGATTTGAGTAAAAGGTCGAACA
* * * * *
1162799 AGTTCTTCTCATTATGAACTTGTTCTCCATCTTCGGATGAGTTATTCTCATTATGAAGTCTTCTA
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTCTCATTATGAACTCTTCCA
*
1162864 TTGGAAATGACGATCCACCT-ATTTCTGTGATGGATTTGAGTAAAAGCTCGAACA
66 TTGGAAATGACGATCCACCTCA-TTCTGTGATGGATTTGAGTAAAAGGTCGAACA
* * * *
1162918 AGTTCTTCTCATTATGAACTTATTCTCCCTCTTTGGACGAGTTATTCTCATTATGAACTC-TCCA
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTCTCATTATGAACTCTTCCA
1162982 TTGGAAATGACGATCCACCTCATTCTGTGATGGATTTGAGTAAAAGGTCGAACA
66 TTGGAAATGACGATCCACCTCATTCTGTGATGGATTTGAGTAAAAGGTCGAACA
* * *
1163036 AGTTATTCTCATTATGAACTTCTTCTCCCTCTTCAGACGAGTTCTTCTCATTATGAACTTCTTC
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTCTCATTATGAAC-TCTTC
1163100 TCCCTCTTCG
Statistics
Matches: 372, Mismatches: 37, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
117 87 0.23
118 119 0.32
119 112 0.30
120 10 0.03
121 43 0.12
122 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (119 bp):
AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGATGAGTTCTTCTCATTATGAACTCTTCCA
TTGGAAATGACGATCCACCTCATTCTGTGATGGATTTGAGTAAAAGGTCGAACA
Found at i:1163035 original size:237 final size:237
Alignment explanation
Indices: 1162561--1163092 Score: 743
Period size: 237 Copynumber: 2.2 Consensus size: 237
1162551 CTGAGCTACG
* *
1162561 AGTTCTTCTCATTATAAACTTCTTCCTCCTCTTCAGATGAATTCTTCTCATTATG-ATCCATTCC
1 AGTTCTTCTCATTATGAACTTCTT-CTCCTCTTCAGATGAGTTCTTCTCATTATGAATCCATTCC
* * *
1162625 ATCGAAAAAATGACGATCCATCTCCTTCTGTAGTGGACTTGAGTAAAAGGTCGAACAAGTTCTTC
65 ATCG-AAAAATGACGATCCACCTACTTCTGTAGTGGACTTGAGTAAAAGCTCGAACAAGTTCTTC
* * * * *
1162690 TCACTATGAACTTCTTCTCCCTTTTCGGATGAGTTCTTCTTATATGAACTCTTCATTGGAAATGA
129 TCACTATGAACTTATTCTCCCTTTTCGGACGAGTTATTCTCATATGAACTCTCCATTGGAAATGA
1162755 CGATCCACCTCATTCTATGATGAATTTGAGTAAAAGGTCGAACA
194 CGATCCACCTCATTCTATGATGAATTTGAGTAAAAGGTCGAACA
* * *
1162799 AGTTCTTCTCATTATGAACTTGTTCTCCATCTTCGGATGAGTTATTCTCATTATGAAGT-C-TTC
1 AGTTCTTCTCATTATGAACTTCTTCTCC-TCTTCAGATGAGTTCTTCTCATTATGAA-TCCATTC
* * * * *
1162862 TATTG-GAAATGACGATCCACCTATTTCTGT-GATGGATTTGAGTAAAAGCTCGAACAAGTTCTT
64 CATCGAAAAATGACGATCCACCTACTTCTGTAG-TGGACTTGAGTAAAAGCTCGAACAAGTTCTT
*
1162925 CTCATTATGAACTTATTCTCCCTCTTT-GGACGAGTTATTCTCATTATGAACTCTCCATTGGAAA
128 CTCACTATGAACTTATTCTCCCT-TTTCGGACGAGTTATTCTCA-TATGAACTCTCCATTGGAAA
* *
1162989 TGACGATCCACCTCATTCTGTGATGGATTTGAGTAAAAGGTCGAACA
191 TGACGATCCACCTCATTCTATGATGAATTTGAGTAAAAGGTCGAACA
* *
1163036 AGTTATTCTCATTATGAACTTCTTCTCCCTCTTCAGACGAGTTCTTCTCATTATGAA
1 AGTTCTTCTCATTATGAACTTCTTCT-CCTCTTCAGATGAGTTCTTCTCATTATGAA
1163093 CTTCTTCTCC
Statistics
Matches: 261, Mismatches: 26, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
235 1 0.00
236 84 0.32
237 120 0.46
238 53 0.20
239 2 0.01
240 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (237 bp):
AGTTCTTCTCATTATGAACTTCTTCTCCTCTTCAGATGAGTTCTTCTCATTATGAATCCATTCCA
TCGAAAAATGACGATCCACCTACTTCTGTAGTGGACTTGAGTAAAAGCTCGAACAAGTTCTTCTC
ACTATGAACTTATTCTCCCTTTTCGGACGAGTTATTCTCATATGAACTCTCCATTGGAAATGACG
ATCCACCTCATTCTATGATGAATTTGAGTAAAAGGTCGAACA
Found at i:1163083 original size:22 final size:22
Alignment explanation
Indices: 1163055--1163123 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 22
1163045 CATTATGAAC
1163055 TTCTTCTCCCTCTTCAGACGAG
1 TTCTTCTCCCTCTTCAGACGAG
* *
1163077 TTCTTCT--C-ATT-ATGA--AC
1 TTCTTCTCCCTCTTCA-GACGAG
*
1163094 TTCTTCTCCCTCTTCGGACGAG
1 TTCTTCTCCCTCTTCAGACGAG
1163116 TTCTTCTC
1 TTCTTCTC
1163124 ATTATGAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
17 8 0.23
18 1 0.03
19 5 0.14
20 5 0.14
22 16 0.46
ACGTcount: A:0.13, C:0.33, G:0.12, T:0.42
Consensus pattern (22 bp):
TTCTTCTCCCTCTTCAGACGAG
Found at i:1163085 original size:39 final size:39
Alignment explanation
Indices: 1163036--1163133 Score: 178
Period size: 39 Copynumber: 2.5 Consensus size: 39
1163026 AGGTCGAACA
*
1163036 AGTTATTCTCATTATGAACTTCTTCTCCCTCTTCAGACG
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCAGACG
*
1163075 AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGACG
1 AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCAGACG
1163114 AGTTCTTCTCATTATGAACT
1 AGTTCTTCTCATTATGAACT
1163134 CTCCATTCGA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.19, C:0.28, G:0.11, T:0.42
Consensus pattern (39 bp):
AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCAGACG
Found at i:1163116 original size:157 final size:158
Alignment explanation
Indices: 1162918--1163251 Score: 535
Period size: 157 Copynumber: 2.1 Consensus size: 158
1162908 AGCTCGAACA
*
1162918 AGTTCTTCTCATTATGAACTTATTCTCCCTCTTTGGACGAGTTATTCTCATTATGAACTCTCCAT
1 AGTTCTTCTCATTATGAACTTATTCTCCCTCTTCGGACGAGTTATTCTCATTATGAACTCTCCAT
* * * *
1162983 TGGAAATGACGATCCACCTCATTCTGTGATGGA-TTTGAGTAAAAGGTCGAACAAGTTATTCTCA
66 TCGAAATGACGATCCACCCCATTCTGTGATGGATTTTGAGCAAAAGGTAGAACAAGTTATTCTCA
1163047 TTATGAACTTCTTCTCCCTCTTCAGACG
131 TTATGAACTTCTTCTCCCTCTTCAGACG
* *
1163075 AGTTCTTCTCATTATGAACTTCTTCTCCCTCTTCGGACGAGTTCTTCTCATTATGAACTCTCCAT
1 AGTTCTTCTCATTATGAACTTATTCTCCCTCTTCGGACGAGTTATTCTCATTATGAACTCTCCAT
* * * *
1163140 TCGAAATGTCGATCTACCCCATTCTGTGATGGATTTTGAGCAAAAGTTAGAACAAGTTCTTCTCA
66 TCGAAATGACGATCCACCCCATTCTGTGATGGATTTTGAGCAAAAGGTAGAACAAGTTATTCTCA
* *
1163205 TTATGAACTTCTTCTCCCTTTTCGGACG
131 TTATGAACTTCTTCTCCCTCTTCAGACG
*
1163233 AGTTCTTCTCATCATGAAC
1 AGTTCTTCTCATTATGAAC
1163252 CCTTCCCTTG
Statistics
Matches: 162, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
157 91 0.56
158 71 0.44
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (158 bp):
AGTTCTTCTCATTATGAACTTATTCTCCCTCTTCGGACGAGTTATTCTCATTATGAACTCTCCAT
TCGAAATGACGATCCACCCCATTCTGTGATGGATTTTGAGCAAAAGGTAGAACAAGTTATTCTCA
TTATGAACTTCTTCTCCCTCTTCAGACG
Found at i:1164388 original size:18 final size:18
Alignment explanation
Indices: 1164365--1164421 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
1164355 TTTATTTCGA
1164365 TTTCTTATTTTTCTTTCT
1 TTTCTTATTTTTCTTTCT
* *
1164383 TTTCTTTTTTCTTCTAT-T
1 TTTCTTATTT-TTCTTTCT
*
1164401 TTTCTTCTATTTTC-TTCT
1 TTTCTTAT-TTTTCTTTCT
1164419 TTT
1 TTT
1164422 AAGCATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
17 1 0.03
18 24 0.75
19 7 0.22
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTCTTATTTTTCTTTCT
Found at i:1164404 original size:11 final size:11
Alignment explanation
Indices: 1164384--1164418 Score: 56
Period size: 10 Copynumber: 3.4 Consensus size: 11
1164374 TTTCTTTCTT
1164384 TTCT-TTTTTC
1 TTCTATTTTTC
1164394 TTCTATTTTTC
1 TTCTATTTTTC
1164405 TTCTA-TTTTC
1 TTCTATTTTTC
1164415 TTCT
1 TTCT
1164419 TTTAAGCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.54
11 11 0.46
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.74
Consensus pattern (11 bp):
TTCTATTTTTC
Found at i:1178008 original size:23 final size:23
Alignment explanation
Indices: 1177978--1178026 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
1177968 AAGACATTTT
*
1177978 CATCCACTTTGCCACGATATCTC
1 CATCCACTTTGCCACGACATCTC
1178001 CATCCACTTTGCCACGACATCTC
1 CATCCACTTTGCCACGACATCTC
1178024 CAT
1 CAT
1178027 TTGCTACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.41, G:0.08, T:0.29
Consensus pattern (23 bp):
CATCCACTTTGCCACGACATCTC
Found at i:1180571 original size:74 final size:74
Alignment explanation
Indices: 1180488--1180638 Score: 302
Period size: 74 Copynumber: 2.0 Consensus size: 74
1180478 ATTCATTTAA
1180488 GCTTAAATTAAGGCTAAATTAACATGAAATGTACACATTTCATGAAAACTTAACCATTTTTAGAT
1 GCTTAAATTAAGGCTAAATTAACATGAAATGTACACATTTCATGAAAACTTAACCATTTTTAGAT
1180553 CCATTTCGT
66 CCATTTCGT
1180562 GCTTAAATTAAGGCTAAATTAACATGAAATGTACACATTTCATGAAAACTTAACCATTTTTAGAT
1 GCTTAAATTAAGGCTAAATTAACATGAAATGTACACATTTCATGAAAACTTAACCATTTTTAGAT
1180627 CCATTTCGT
66 CCATTTCGT
1180636 GCT
1 GCT
1180639 CCTTAATACC
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 77 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (74 bp):
GCTTAAATTAAGGCTAAATTAACATGAAATGTACACATTTCATGAAAACTTAACCATTTTTAGAT
CCATTTCGT
Found at i:1181455 original size:34 final size:34
Alignment explanation
Indices: 1181412--1181485 Score: 148
Period size: 34 Copynumber: 2.2 Consensus size: 34
1181402 GAGTTTAAAT
1181412 GTTGTTTATCCATTTGGGAATGTGATGCATAATG
1 GTTGTTTATCCATTTGGGAATGTGATGCATAATG
1181446 GTTGTTTATCCATTTGGGAATGTGATGCATAATG
1 GTTGTTTATCCATTTGGGAATGTGATGCATAATG
1181480 GTTGTT
1 GTTGTT
1181486 GTTTGGCAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.22, C:0.08, G:0.27, T:0.43
Consensus pattern (34 bp):
GTTGTTTATCCATTTGGGAATGTGATGCATAATG
Found at i:1182886 original size:41 final size:41
Alignment explanation
Indices: 1182799--1182886 Score: 133
Period size: 41 Copynumber: 2.2 Consensus size: 41
1182789 TAATTCTTAA
* *
1182799 ATAAAA-TAATAATAAAATAATCAAACTACAAATCTTAAAT
1 ATAAAAGTAATAATAAAATAATCAAACTAAAAATCCTAAAT
*
1182839 AAAAAAGTAATAATAAAATAATCAAACTAAAAATCCTAAAT
1 ATAAAAGTAATAATAAAATAATCAAACTAAAAATCCTAAAT
*
1182880 CTAAAAG
1 ATAAAAG
1182887 GTTTATCACA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 5 0.12
41 37 0.88
ACGTcount: A:0.64, C:0.10, G:0.02, T:0.24
Consensus pattern (41 bp):
ATAAAAGTAATAATAAAATAATCAAACTAAAAATCCTAAAT
Found at i:1183246 original size:2 final size:2
Alignment explanation
Indices: 1183239--1183266 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1183229 AACGTATTTA
1183239 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1183267 TAATACATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1183444 original size:23 final size:23
Alignment explanation
Indices: 1183414--1183458 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
1183404 CGTAAGTAAC
* * *
1183414 CATAATATTTTGATTAATATAAA
1 CATAATATATAGATTAACATAAA
1183437 CATAATATATAGATTAACATAA
1 CATAATATATAGATTAACATAA
1183459 TAGTATATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.38
Consensus pattern (23 bp):
CATAATATATAGATTAACATAAA
Found at i:1183728 original size:15 final size:14
Alignment explanation
Indices: 1183690--1183728 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
1183680 AGATTGCGAT
*
1183690 AATTTAAAGAACTAA
1 AATTTAAA-TACTAA
1183705 AATTTAAATACTGAA
1 AATTTAAATACT-AA
1183720 AATTTAAAT
1 AATTTAAAT
1183729 TGCTTCGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (14 bp):
AATTTAAATACTAA
Found at i:1185989 original size:29 final size:29
Alignment explanation
Indices: 1185932--1185989 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
1185922 ATCATTCTCC
* *
1185932 ATTTATCTTTATATTTTTTTAATTTTTTT
1 ATTTATCTTTATATTCTTTTAATTCTTTT
1185961 ATTTATTCTTTAT-TTCTTTT-ATCTCTTTT
1 ATTTA-TCTTTATATTCTTTTAAT-TCTTTT
1185990 TTATCAACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 2 0.08
29 16 0.64
30 7 0.28
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (29 bp):
ATTTATCTTTATATTCTTTTAATTCTTTT
Found at i:1185992 original size:20 final size:19
Alignment explanation
Indices: 1185946--1185993 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
1185936 ATCTTTATAT
*
1185946 TTTTTTAATTTTTTTATTTA
1 TTTTTT-ATTTTTTTATCTA
* *
1185966 TTCTTTATTTCTTTTATCTC
1 TTTTTTATTT-TTTTATCTA
1185986 TTTTTTAT
1 TTTTTTAT
1185994 CAACTAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTATTTTTTTATCTA
Found at i:1188792 original size:11 final size:11
Alignment explanation
Indices: 1188776--1188821 Score: 67
Period size: 11 Copynumber: 4.2 Consensus size: 11
1188766 GAAGCCCCCA
1188776 TTTTTTCTTTT
1 TTTTTTCTTTT
1188787 TTTTTTCTTTT
1 TTTTTTCTTTT
1188798 TTTTTTAC-TTT
1 TTTTTT-CTTTT
*
1188809 TTTCTTCTTTT
1 TTTTTTCTTTT
1188820 TT
1 TT
1188822 ATACTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 1 0.03
11 30 0.94
12 1 0.03
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:1188798 original size:12 final size:12
Alignment explanation
Indices: 1188776--1188811 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
1188766 GAAGCCCCCA
1188776 TTTTTTC-TTTT
1 TTTTTTCTTTTT
1188787 TTTTTTCTTTTT
1 TTTTTTCTTTTT
*
1188799 TTTTTACTTTTT
1 TTTTTTCTTTTT
1188811 T
1 T
1188812 CTTCTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 7 0.30
12 16 0.70
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.89
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:1188826 original size:20 final size:19
Alignment explanation
Indices: 1188787--1188848 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 19
1188777 TTTTTCTTTT
*
1188787 TTTTTTCTTTTTTTTTTAC
1 TTTTTTCTTTTTTTTATAC
1188806 TTTTTTCTTCTTTTTTATAC
1 TTTTTTCTT-TTTTTTATAC
1188826 TTTATTT-TTATTTTTTATA-
1 TTT-TTTCTT-TTTTTTATAC
1188845 TTTT
1 TTTT
1188849 ATATTTTATC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.03
19 12 0.31
20 23 0.59
21 3 0.08
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTTCTTTTTTTTATAC
Found at i:1188840 original size:30 final size:29
Alignment explanation
Indices: 1188775--1188841 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 29
1188765 TGAAGCCCCC
* *
1188775 ATTTTTTCTTTTTTTTTTCTTTTTTTTTT
1 ATTTTTTCTTTTTTTTTACTTTTATTTTT
1188804 ACTTTTTTCTTCTTTTTTATAC-TTTATTTTT
1 A-TTTTTTCTT-TTTTTT-TACTTTTATTTTT
1188835 ATTTTTT
1 ATTTTTT
1188842 ATATTTTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 1 0.03
30 15 0.45
31 15 0.45
32 2 0.06
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (29 bp):
ATTTTTTCTTTTTTTTTACTTTTATTTTT
Found at i:1188848 original size:8 final size:7
Alignment explanation
Indices: 1188818--1188888 Score: 90
Period size: 7 Copynumber: 9.9 Consensus size: 7
1188808 TTTTCTTCTT
1188818 TTTTATA
1 TTTTATA
*
1188825 CTTTAT-
1 TTTTATA
*
1188831 TTTTATT
1 TTTTATA
1188838 TTTTATA
1 TTTTATA
1188845 TTTTATA
1 TTTTATA
1188852 TTTTATCA
1 TTTTAT-A
1188860 TTTTATCA
1 TTTTAT-A
1188868 TTTTATCA
1 TTTTAT-A
1188876 TTTTATA
1 TTTTATA
1188883 TTTTAT
1 TTTTAT
1188889 CTTTATCTTT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
6 5 0.08
7 31 0.53
8 23 0.39
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTATA
Found at i:1188855 original size:16 final size:15
Alignment explanation
Indices: 1188818--1188905 Score: 98
Period size: 13 Copynumber: 6.2 Consensus size: 15
1188808 TTTTCTTCTT
*
1188818 TTTTATACTTTAT--
1 TTTTATATTTTATCA
*
1188831 TTTTATTTTTTAT-A
1 TTTTATATTTTATCA
1188845 TTTTATATTTTATCA
1 TTTTATATTTTATCA
1188860 TTTTATCATTTTATCA
1 TTTTAT-ATTTTATCA
1188876 TTTTATATTTTATC-
1 TTTTATATTTTATCA
*
1188890 -TTTAT-CTTTATCA
1 TTTTATATTTTATCA
1188903 TTT
1 TTT
1188906 CTCTTTTCTT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
12 6 0.09
13 16 0.24
14 14 0.21
15 15 0.23
16 15 0.23
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTATATTTTATCA
Found at i:1198654 original size:19 final size:17
Alignment explanation
Indices: 1198606--1198656 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 17
1198596 AAAAGACATG
1198606 AAAGAAAAAAAATGGAA
1 AAAGAAAAAAAATGGAA
*
1198623 AAAAAAAACAAAAGTGTGAA
1 AAAGAAAA-AAAA-TG-GAA
1198643 AAAGAAAAAAAATG
1 AAAGAAAAAAAATG
1198657 TATTTTGACA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
17 7 0.24
18 6 0.21
19 6 0.21
20 10 0.34
ACGTcount: A:0.75, C:0.02, G:0.16, T:0.08
Consensus pattern (17 bp):
AAAGAAAAAAAATGGAA
Found at i:1203200 original size:12 final size:12
Alignment explanation
Indices: 1203183--1203212 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1203173 CAGTCTTAAC
1203183 TTTTTTGCTTCT
1 TTTTTTGCTTCT
*
1203195 TTTTTTTCTTCT
1 TTTTTTGCTTCT
1203207 TTTTTT
1 TTTTTT
1203213 TTCTTCATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.83
Consensus pattern (12 bp):
TTTTTTGCTTCT
Found at i:1203213 original size:12 final size:13
Alignment explanation
Indices: 1203183--1203218 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
1203173 CAGTCTTAAC
*
1203183 TTTTTTGCTTC-T
1 TTTTTTTCTTCTT
1203195 TTTTTTTCTTCTT
1 TTTTTTTCTTCTT
1203208 TTTTTTTCTTC
1 TTTTTTTCTTC
1203219 ATCTCTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTTTTCTTCTT
Found at i:1208841 original size:12 final size:13
Alignment explanation
Indices: 1208818--1208860 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
1208808 GTCATAAATC
1208818 TATGACACACATT
1 TATGACACACATT
1208831 TATGA-ACACATT
1 TATGACACACATT
* *
1208843 TATGACGCGCATT
1 TATGACACACATT
1208856 TATGA
1 TATGA
1208861 TGTTCATTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (13 bp):
TATGACACACATT
Found at i:1217389 original size:18 final size:18
Alignment explanation
Indices: 1217366--1217403 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
1217356 AGGATGCTTC
1217366 TGCTGCACTATATTTTGG
1 TGCTGCACTATATTTTGG
1217384 TGCTGCACTATATTTTGG
1 TGCTGCACTATATTTTGG
1217402 TG
1 TG
1217404 GGGCACTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.45
Consensus pattern (18 bp):
TGCTGCACTATATTTTGG
Found at i:1217409 original size:18 final size:18
Alignment explanation
Indices: 1217370--1217411 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
1217360 TGCTTCTGCT
*
1217370 GCACTATATTTTGGTGCT
1 GCACTATATTTTGGTGCG
*
1217388 GCACTATATTTTGGTGGG
1 GCACTATATTTTGGTGCG
1217406 GCACTA
1 GCACTA
1217412 CATTGACACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.17, G:0.26, T:0.38
Consensus pattern (18 bp):
GCACTATATTTTGGTGCG
Found at i:1234507 original size:18 final size:18
Alignment explanation
Indices: 1234484--1234526 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
1234474 CAAACCAATA
*
1234484 AATGATTAACTCTTAGTC
1 AATGATTAACTCTTAATC
1234502 AATGATTAACTCTTAATC
1 AATGATTAACTCTTAATC
*
1234520 AGTGATT
1 AATGATT
1234527 GTAAATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.40
Consensus pattern (18 bp):
AATGATTAACTCTTAATC
Found at i:1236606 original size:303 final size:303
Alignment explanation
Indices: 1235301--1246205 Score: 15769
Period size: 303 Copynumber: 36.0 Consensus size: 303
1235291 TTCTTGATAT
*
1235301 CCCACTCCAAGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1235366 CCGAAAAGGAGGGG-GCAACACGAGGACTTCCTAGGAGGTCACCCATTCTAGTATTATTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * *
1235430 CAAACACGCTTAACTACGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGGTCGCACCCA
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
** *
1235495 T-AAACCTTGCGCCCTTAATTTATTTAAAGCCTTCG-TTTCGTTCCGACCCGTACTTAAGGGACT
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTC-TTCCGACCCGTACTTAAGGGACT
*
1235558 CGCAAAATTCAGATTCTACAACCCGAACCTTTCT-CCCAGAGTAC
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCA-AGTAC
* *
1235602 CCCACTCCAGGCAGGCGGAATACATACGTGTGCTTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* ** * *
1235667 CCGAAAATGAGGGGTGCAACACGAGGACTTCTGAGGATGTCATCCATCCTAGTACTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * *
1235732 CAGGCACGCTTAACTACGGAGTTTTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* ** *
1235797 TCATGCCTTACGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACTTGTACTTAAAGG-CTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
1235861 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* *
1235904 CCCACCCCAGGGAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* *
1235969 ACGAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* *
1236034 CAAGCACGCTTAACTACGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * * *
1236099 TCATGCCTTGCACCCTTAATTTATTTAAGGCCTTCGTTTTTTTTCCGACCCGTACATAAGGGTCT
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCG-TTTTCTTCCGACCCGTACTTAAGGGACT
** * * *
1236164 CGCAAAATTTTGATTCTTCGACCCGAACCTTTCTACCCAAGTTC
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * *
1236208 CGCACTCCAGGCAGGCGGAATACGTAAGTGTGCGTGTGTTCGAGATAAAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1236273 CCGATAAGGAGGGGTGCAACACGTGGACTTCCCAGGAGATCACCCATCCTAGTACTAGTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * *
1236338 CAAGCACGCTTAACTGCGGAGTTCTGATGAGATCCAGTGCATTAGTGCTGGTATGATCACACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* ** *
1236403 TCATGCCTTGCGCCCTTAATTTATTGAAGGATTTCGTTTTCTTCCGACTCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * * * * *
1236468 GCAAAATTCGGAGTCTTCGACCCAAACCTTTCTACCCAAGTTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * *
1236511 CCCACTCCAGGAAGGCGGAATACGTATGAGTGCGTATGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* *
1236576 CCGAAAAGGAGGGGTACAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGGC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * *
1236641 CAAGCGCGCTTAACTGTGGAGTTCTGATGGGATCTGGTGCATTAGTGAT-GTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * * *
1236705 TCATGCCTTACGTCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCTGTACTTAAAGG-CTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* *
1236769 ACAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
**
1236812 CCCACTTTAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* *
1236877 ACGATAAA-GAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCTC
66 CCGA-AAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
* * * *
1236941 CCAAGCGCGCTTAACTACAGAGTTCTGATGGGATCCGGTGCATTAGTGGTGGTATGATCGCACCC
130 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * *
1237006 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTTTTCTGACACGTACTTAAGGGACT
195 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
** * * *
1237071 CGCAAAATTTTGATTCTTCGACCCGAACCTTTCTACCCAAGTTC
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* *
1237115 CGCACTCCAGGCAGGCAGAATACGTACGTGTGCGT-TGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1237179 CCGATAAGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTACTAGTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* *
1237244 CAAGAACGCTTAACTGTGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* ** *
1237309 TCATGCCTTGCTCCCTTAATTTATTTAAGGATTTCGTTTTCTTCCGACTCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
** * * * * *
1237374 GCAAAATTCAGATTCTTTGAACCAAACCTTTCTACCCAAATTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* *
1237417 CCCACTCCAGGCAGGCGGAATACGTACGAGTGCGTATGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * * *
1237482 CCGAAAAAGAGGGGTACAACACGTGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCACC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * * *
1237547 CAAGCACGCTTAACTACAGAGTTCTGATGGGATTCGGTGCATTAGTGCTGGTATGATCGTACCGG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
** *
1237612 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACATGTTCTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
1237677 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
** *
1237720 CCCACTCCATACAGGCAGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* *
1237785 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCGAGGAGGTCACCCATCCTAGTATTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * * * *
1237850 CAGGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGATGATATAATCACACACG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1237915 TCATGCCTTGCTCCCTTAATTTATTTAAGGCATTCGTTTTCTTCCGACTCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * * * * *
1237980 GTAAAATTCAGATTCTTCAACCCAAACCTTTCTACCCAAGTTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * *
1238023 CCCACTCTAGGCAGGAGGAATACGTACGTTTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* *
1238088 CCGAAAAGGAGGGGTGCAACAC-ATGGACTTCCCAGGAGGTCACCCATCCTAGTACTAGTCTCAC
66 CCGAAAAGGAGGGGTGCAACACGA-GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
* * *
1238152 CCAAGCACGCTTCACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGATCACACCC
130 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * * * *
1238217 CTCATGCTTTGCGCCCTTAATTTATTTAAGGCATTCATTTTCTTCCAACCCGTACTTAAGGGACT
195 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
* * * *
1238282 CGAAAAAATTCGGATTCTACAACCCAAACCTTTCTCCCCAAGTAC
260 CG-CAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * *
1238327 CCCGCTCCAGGTAGGCGGAATACGTACGTCTGCGTGTGTTCGAAATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1238392 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCGAGAAGGTCACCCATCCTAGTATTAC-CTTCGC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTC-TCGC
* * * * **
1238456 CCAGGCACGCTTAACTGCGGAGTTCTGATGGTATCTGGTGCATTAGTGCTGATATGATCGCATAC
130 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * *
1238521 GTCATGCCTTGCTCCCTTAATTTATTTAAGGCATTCGTTTTCTTCCGACTCGTACTTAAGGGACT
195 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
* * *
1238586 CGCAAAATTCAGATTCTTCGACCCGAACCTTTCTACCCAAGT-T
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
1238629 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1238694 CCGAAAAGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTATTAGTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * ** * *
1238759 CAACCACGCTTAACTGCGGAGTTCTGATGAGATCCAATGCATTAGTGCTGATATGATCACACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* *
1238824 TCATGCCTTACGCCCTTAATTTATTTAAGGCATTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * *
1238889 GTAAAATTCGGATTCTACAACCCGAACCTTTCTCCCCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* *
1238932 CCCACTCCAGGCAGGCGGAATACGTACGTATGCATGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1238997 CCAAAAAGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTACTAGTCTCACC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * *
1239062 CAAGCACGCTTCACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGATCACACCCC
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1239127 TCATGCTTTGCGCCCTTAATTTATTTAAGGCATTCGTTTTCTTCCAACCCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * * *
1239192 GAAAAAATTCGGATTCTACAACCCAAACCTTTCTCCCCAAGTAC
261 G-CAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * *
1239236 CCCGCTCCAGGTAGGCGGAATACGTACGTCTGCGTGTGTTCGAAATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1239301 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCGAGAAGGTCACCCATCCTAGTATTACCCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * ** * **
1239366 CAGGCACGCTTAACTGCGGAGTTCTGATGGTATCTAGTGCATTAGTGCTGATATGATCGCATACG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1239431 TCATGCCTTGCTCCCTTAATTTATTTAAGGCATTCGTTTTCTTCCGACTCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * * *
1239496 ACAAAATTCAGATTCTTCGACCCGAACCTTTCTACCCAAGTTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
*
1239539 CCCACTCCAGGCAGGCGAAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1239604 CCGAAAAGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTATTAGTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * ** * *
1239669 CAACCACGCTTAACTGCGGAGTTCTGATGAGATCCAATGCATTAGTGCTGATATGATCACACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1239734 TCATGCCTTACGCCCTTAATTTATTTAAGGCATTCGTTTTCTTCCGACCCGTACTTAAAGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * *
1239799 GTAAAATTCGGATTCTACAACCCGAACCTTTCTCCCCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * *
1239842 CCCACTCCAGGTAGGCGGAATACGTACGTATGCATGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1239907 CCGAAAAGGAGGGGTACAACACGAGGACTTCCGAGGAGGTCACCCATCCTAGTATTACTCTTGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * *
1239972 CAGGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGATATGATCGCACACG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1240037 TCATGCCTTGCACCCTTAATTTATTTAAGGCCTTCGTTTTCTTCTGACTCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * * * * *
1240102 ACAATATTTAGATTCTTCGACCCGAACCTTTCTACCCAAGTTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
1240145 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* *
1240210 CCGAAAAGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTACTAGTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* *
1240275 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGATCACACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1240340 TCATGCCTTGTGCCCTTAATTTATTTAAGGCATTCATTTTCTTCCGACCCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* *
1240405 GCAAAATTCGGATTCTACAACCCGAACCTTTCTCCCCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* *
1240448 CCCACTCCAGGGAGGCAGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* *
1240513 ACGAAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * * * *
1240578 CAAGCATGCTTAAGTACGGAGTTCTGATGGGATCCGATGCATTACTGCTGGTATGATCGCGCCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1240643 TCAAGCCTTGCACCCTTAATTTATTTAAGGCCTTCGTTTTTTTTCCGACCCGTACTTAAGGGACT
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCG-TTTTCTTCCGACCCGTACTTAAGGGACT
** ** * * *
1240708 CAAAAAATTTTGATTCTTCGACCCGAACCTTTCTACCCAAGTTC
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * *
1240752 CGCACTCCAGGCAGGCGGAATACGTAAGTGTGCGTGTGTTTGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1240817 CCGATAAGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTACTAGTCTCACC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * *
1240882 CAAGAACGCTTAACTGCGGAGTTCTGATGAGATCCAGTGCATTAGTGATGGTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
** *
1240947 TCATGCCTTGCGCCCTTAATTTATTTAAGGATTTCGTTTTCTTCCGACTCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* ** * * * * *
1241012 GAAAAATTTGGATTCTTCGACTCAAACCTTTCTACCCAAGTTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * *
1241055 CCCACTCCAGGCAGGCGGAATACGTACGAGTGCGTATGTTCGAGATAGAACAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1241120 CCGAAAAGGAGGGGTACAACACGAGGACTTCCCCGGAGGTCACCCACCCTAGTACTACTCTCAG-
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTC-GC
* * *
1241184 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGGATTAGTGAT-GTATGATCGAACCC
130 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * * *
1241248 GTCATGCCTTACGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCTGACCTGTACTTAAAGG-CT
195 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
* * *
1241312 C-AAAAATT--GATTCTACGACCTGAACCTTTCT-CCCAAGTAT
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
** *
1241352 CCCACTTTAGGCAGGCGGAATAGGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1241417 ACGAAAAAGAGGGGTGCAACACGAGGAATTCCCAGGAGGTCACCCATCCTAATACTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
** * **
1241482 CAAGTGCGCTTAACTACGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAATCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* *
1241547 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCATTTTTTTCCGACCCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * * * *
1241612 GAAAAATT-TGATTCTTCGACCCGAACCTTTCTACCCAAGTTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * *
1241654 CGCACTCCAAGCAGGCGGAATACGTAAGTGTGCAAAATTTTGCGTCTGTTCGAGATAGAATAAAA
1 CCCACTCCAGGCAGGCGGAATACGT-A-CGTG--------TGCGTGTGTTCGAGATAGAATAAAA
* *
1241719 AGAAAATAATCCGATAAGGAGGGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTAC
56 AGAAAATAATCCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTAC
*
1241784 TAGTCTCGCCCTAGTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTA
121 TA--------C---TCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTA
* * * *
1241849 GTGCTGGTATGATCACATCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCATTCATTTTCTTC
175 GTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTC
* * *
1241914 CGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACAACCCGAACCTTTCTCCCCAAG-AA
240 CGACCCGTACTTAAGGGACTCGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * ** * *
1241977 ACCAGTCCAGGCAAACAGAATACGTACGTATGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1242042 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCGAGGAGGTCACCCATCCTACTATTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * *
1242107 CAGGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCATTAGTGCTGAG-ATGATCGCACAC
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTG-GTATGATCGCACCC
* * *
1242171 GTCAAGCCTTGCACCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACTCGTACTTAAGGGACT
195 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
* * * *
1242236 CACAAAATTCAGATTCTTCGACCCGAACCTTTCTACCCAAGTTC
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* *
1242280 CCCACTCCAGGCAGGCAGAATACGTACGTGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* ** *
1242345 CAGAAAAGGAGGGGTGCAACAC-ATGGACTTCCCAGGAGGTCACCCATCCTAGTACTAGGCTCGG
66 CCGAAAAGGAGGGGTGCAACACGA-GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGC
* *
1242409 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGATCACACCC
130 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * * * *
1242474 ATCATGCCTTGCGCCCTTAATTTTTTTAAGGCATTCGTTTTCTTCTGATCCGTACTTAAGGGACT
195 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
* * *
1242539 CGCAAAATTCGGATTCTACAACCCGAACCTTTCTCCCCAAATAC
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * *
1242583 CCTACTCCAAGCAGGCAGAATACGTACGTATGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1242648 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCGAGGAGGTCACCCATTCTAGTATTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * *
1242713 CAGGCACGCTTAACTGCAGAGTTCTGATGGGATCCGGTGCATTAGTGCTGATATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
*
1242778 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGAGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
1242843 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* *
1242886 CCCACTCCAGGCAGGCGGAATACGTACTTGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * * *
1242951 CCAAAAAAGAGGGGTGCAACACGAGGGCTTCCCAGGAGGTCACCCATCCTAGAACTACTCTCACC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* *
1243016 CAAGCACCCTTAAATGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1243081 TCATGCCTTGCGCCCTTAATTTTTTTAAGGCCTTCGTTTTCTTCCAACCCGTACTTAAGGGACTT
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * * * * * *
1243146 GCAAAATTCGGATTCTTCTACCTGAAGCTTTCTACCCAAGTTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* *
1243189 CCTACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAAATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1243254 CCGAAAAGGAGGGGTGCAACACGTGGACTT-CCAGGAGGTCACCCATCCTAGTATTATTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * *
1243318 CAAGCACGCTTAACTGCGGAGATCTGATGGGATCTGGTGCATTAGTG--GGTATGATCGCACCCA
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
** * * *
1243381 T-AAACCTTGCGCCCTTAATTTATTTAAAGCCTTCATTTTCTTCCGACCCGTACATAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * *
1243445 GCAAAATTCGGATTCTAGGACCCGAACCTTTCTCCTCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * *
1243488 CCCACTCCAGGCAGGCAGAATACGTATGTGTGCGTGTGTTCGAGATAAAATGAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* **
1243553 CCAAAAAGGAGGGGTGCAACACGAGGACTTCTGAGGAGGTCACCCATCCTAGTACTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* **
1243618 CAGGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTATTGGTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1243683 TCATGACTTGCACCCTTAATTTATTTAAGGCATTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
*
1243748 GCAAAATTCAGATTCTA-GAACCCGAACCTTTCTCCCCAAGAAC
261 GCAAAATTCAGATTCTACG-ACCCGAACCTTTCTCCCCAAGTAC
*
1243791 CCCACTCCAGGCAGGCGGAATACGTACGTATGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1243856 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCGAGGAGGTCACCCATCCTACTATTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
*
1243921 CAGGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGAG-ATGATCGCACCC
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTG-GTATGATCGCACCC
1243985 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
195 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
* * * * * * *
1244050 CGTAAAATTCATATTCTTCGACCTGAACCTTTCTACCTAAGTTC
260 CGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
*
1244094 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAAATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1244159 CCGAAAAGGAGGGGTGCAACACGTGGACTTCCCAGGAAGTCACCCATCCTAGTATTA-TACTCGC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACT-CTCGC
* *
1244223 CCAAGCACGCTTAACTGCGGAGATCTGATGGGATCTGGTGCATTAGT-CTTGGTATGATCGCACC
130 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC-TGGTATGATCGCACC
* ** * *
1244287 CAT-AAACCTTGCGCCCTTAATTTATTTAAAGCCTTCATTTTCTTCCGACCCGTACTTAAGGGAC
194 CGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGAC
* *
1244351 TCGCAAAATTCGGATTCTAGGACCCGAACCTTTCTCCCCAAGTAC
259 TCGCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * * * * *
1244396 CCCACTCCAGGTAGGCAGAATACGTATGTGTGCGTGTGTTAGAGATAAAATGAAAATAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* *
1244461 CCAAAAAGGAGGGGTGCAACACGAGGACTTCCGAGGAGGTCACCCATCCTAGTACTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * * *
1244526 CAGGCACACTTAACTGCGGAGTTCTGATGGGATCCGGTGTATTAGTGCTGGTATGATTGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* *
1244591 TCATGCCTTACGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCTGACCCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
1244656 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * *
1244699 CCCACTCCAGGCAGGCAGAATACGTACGTGTACGTGTGTTCGAGATATAATAAAAGGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1244764 CCGAAAAGGAGGGTTTCAACACGAGGACTTCCCAGGAGTTCACCCATCCTAGAACTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
*** * ** *
1244829 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATATAGAGGGTTAGTGCTGGTATGATCGAACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
** * * *
1244894 TCATGCCCAGCGCCCTTAATTTATTTAAGGCCTTTGTTTTCTTTCGACCCATACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * *
1244959 GCAAAATTCATATTCTACGACCCGTACCTTTTTCGGCTCCACAAGTAC
261 GCAAAATTCAGATTCTACGACCCGAACC--TTT---CTCCCCAAGTAC
* *
1245007 CCCACACCAAGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
*
1245072 CCGAAATGGAGGGGTGCAACACGAGGACTTCCCTA-GAGGTCACCCATCCTAGTACTACTCTCGC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCC-AGGAGGTCACCCATCCTAGTACTACTCTCGC
* * * * *
1245136 CCAAGCACGCTTAACAGCGGAATTCTAATGGGATCCGATGCATTAATGCTGGTATGATCGCACCC
130 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* * * *
1245201 GTCATGCCTTGCGCCCCTAATTTATTTAAGGCCTTCTTTTTGTTCCGACCCATACTTAAGGGACT
195 GTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACT
* * *
1245266 CGCAAAATTC-GAATTCTATGACACGAACCATTCTCCCCAAGTAC
260 CGCAAAATTCAG-ATTCTACGACCCGAACCTTTCTCCCCAAGTAC
*
1245310 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAAAAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* ** * *
1245375 CCAAAAAATAGGGGTGCAACACGAGGACTTCCCAGGAAGTCACCCATCCTAGTACTACTCTTGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* *
1245440 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGATGCAATAGTGCTGGTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
1245505 TCATACCTTGCGCCCATAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTATGGGACT-
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
** *
1245569 AAACAAATTCAGATTCTACGACCCGAACATTTCTCGGCTCCCCAAGTAC
261 GCA-AAATTCAGATTCTACGACCCGAAC-CTT-T---CTCCCCAAGTAC
* *
1245618 CCCACTCCAAGCAGGCGGAATACGTACGTGTGCGTGTGTTC---A-AG-AT-AGAA-AAAA-AAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * *
1245675 CCGCAAAGCAGGGGTGCAACTCGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * *
1245740 CAAGTACGCTTAATTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGAGCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
*
1245805 TCATGCCTTGTGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
* * *
1245870 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCTCAATTTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
* * * *
1245913 CCCACTCCAGGTAGGCGAAATACGTAAGTGTGCGTGTATTCGAGATAGAATAAAAAGAAAATAAT
1 CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
* * * *
1245978 CCGAAAAGGAGAGGTGCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAGCT
66 CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* * ** *
1246043 CAAGTACGCTTAACTGCGGAGTTAT-ATGGGATCTAGTGCATTAGTACTGGTATGATCGCACCCG
131 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
** *
1246107 TTTTGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCAGTACTTAAGGGACTC
196 TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
*
1246172 CCAAAATTCAGATTCTACGACCCGAACCTTTCTC
261 GCAAAATTCAGATTCTACGACCCGAACCTTTCTC
1246206 GGCTCCCCCA
Statistics
Matches: 9510, Mismatches: 1004, Indels: 179
0.89 0.09 0.02
Matches are distributed among these distances:
295 45 0.00
296 1 0.00
297 166 0.02
298 88 0.01
299 184 0.02
300 310 0.03
301 309 0.03
302 1798 0.19
303 4853 0.51
304 1077 0.11
305 7 0.00
306 2 0.00
308 314 0.03
309 1 0.00
312 85 0.01
313 86 0.01
320 1 0.00
321 2 0.00
322 1 0.00
323 153 0.02
324 27 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (303 bp):
CCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT
CCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
TCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTC
GCAAAATTCAGATTCTACGACCCGAACCTTTCTCCCCAAGTAC
Found at i:1246396 original size:227 final size:226
Alignment explanation
Indices: 1245997--1246432 Score: 660
Period size: 227 Copynumber: 1.9 Consensus size: 226
1245987 AGAGGTGCAA
* * *
1245997 CACGTGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAGCTCAAGTACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAGCCCAAGCACGCTTAACTGCGG
* * ** *
1246062 AGTTATATGGGATCTAGTGCATTAGTACTGGTATGATCGCACCCGTTTTGCCTTGCGCCCTTAAT
66 AGTTATATGGAATCCAGTGCATTAGTACTGGTATGATCGCACCCGTCATGCCCTGCGCCCTTAAT
* *
1246127 TTATTTAAGGCCTTCGTTTTCTTCCGACCAGTACTTAAGGGACTCCCAAAATTC-AGATTCTACG
131 TTATTTAAGGCCTTCATTTTCTTCCAACCAGTACTTAAGGGACTCCCAAAATTCGA-ATTCTACG
1246191 ACCCGAACCTTTCTCGGCTCCCCCACTCCAAG
195 ACCCGAACCTTTCTCGGCTCCCCCACTCCAAG
* **
1246223 CACGAGGACTTCCCAGGAGGTCACTCATCCTAGTACTACTCTCTCCCAAGCACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAGCCCAAGCACGCTTAACTGCGG
* * *
1246288 AGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCCTGCGCCCTTAA
66 AGTTAT-ATGGAATCCAGTGCATTAGTACTGGTATGATCGCACCCGTCATGCCCTGCGCCCTTAA
* *
1246353 TTTATTTAAGGCCTTCATTTTCTTCCAATCCA-TACTTAAGGGACTCGCAATATTCGAATTCTAC
130 TTTATTTAAGGCCTTCATTTTCTTCCAA-CCAGTACTTAAGGGACTCCCAAAATTCGAATTCTAC
*
1246417 GGCCCGAACCTTTCTC
194 GACCCGAACCTTTCTC
1246433 CCCAAGTACC
Statistics
Matches: 188, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
226 64 0.34
227 120 0.64
228 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (226 bp):
CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAGCCCAAGCACGCTTAACTGCGG
AGTTATATGGAATCCAGTGCATTAGTACTGGTATGATCGCACCCGTCATGCCCTGCGCCCTTAAT
TTATTTAAGGCCTTCATTTTCTTCCAACCAGTACTTAAGGGACTCCCAAAATTCGAATTCTACGA
CCCGAACCTTTCTCGGCTCCCCCACTCCAAG
Found at i:1246699 original size:529 final size:529
Alignment explanation
Indices: 1245696--1246734 Score: 1593
Period size: 529 Copynumber: 2.0 Consensus size: 529
1245686 GGGTGCAACT
* *
1245696 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGTACGCTTAATTGCGGAG
1 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAG
* * *
1245761 TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGAGCGCACCCGTCATGCCTTGTGCCCTTAATT
66 TTCTGATGGAATCCGGTGCATTAGTGCTGGTATGAGCGCACCCGTCATGCCCTGCGCCCTTAATT
* * *
1245826 TATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCAGATTCTACGAC
131 TATTTAAGGCCTTCATTTTCTTCCAACCCATACTTAAGGGACTCGCAAAATTCAGATTCTACGAC
* * * *
1245891 CCGAACCTTTCTCCTCAATTTCCCCACTCCAGGTAGGCGAAATACGTAAGTGTGCGTGTATTCGA
196 CCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGAAATACGTAAGTGTGCGTGTATTCGA
*
1245956 GATAGAATAAAAAGAAAATAATCCGAAAAGGAGAGGTGCAACACGTGGACTTCCCAGGAGGTCAC
261 GATAGAATAAAAAGAAAATAATCCAAAAAGGAGAGGTGCAACACGTGGACTTCCCAGGAGGTCAC
* * *
1246021 CCATCCTAGTACTACTCTAGCTCAAGTACGCTTAACTGCGGAGTTATATGGGATCTAGTGCATTA
326 CCATCCTAGTACTACTCTAGCTCAAGCACGCTTAACTGCGGAGTTATATGGGATCCAGTGAATTA
** *
1246086 GTACTGGTATGATCGCACCCGTTTTGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTCTTC
391 GTACTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCATTTTCTTC
1246151 CGACCAGTACTTAAGGGACTCCCAAAATTCAGATTCTACGACCCGAACCTTTCTCGGCTCCCCCA
456 CGACCAGTACTTAAGGGACTCCCAAAATTCAGATTCTACGACCCGAACCTTTCTCGGCTCCCCCA
1246216 CTCCAAGCA
521 CTCCAAGCA
* *
1246225 CGAGGACTTCCCAGGAGGTCACTCATCCTAGTACTACTCTCTCCCAAGCACGCTTAACTGCGGAG
1 CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAG
*
1246290 TTCTGATGGAATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCCTGCGCCCTTAATT
66 TTCTGATGGAATCCGGTGCATTAGTGCTGGTATGAGCGCACCCGTCATGCCCTGCGCCCTTAATT
* * *
1246355 TATTTAAGGCCTTCATTTTCTTCCAATCCATACTTAAGGGACTCGCAATATTC-GAATTCTACGG
131 TATTTAAGGCCTTCATTTTCTTCCAACCCATACTTAAGGGACTCGCAAAATTCAG-ATTCTACGA
* * * *
1246419 CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATATGTACGTGTGCGTGTGTTCG
195 CCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGAAATACGTAAGTGTGCGTGTATTCG
* * *
1246484 AGATAGAATAAAAAGAAAATTATCCAAAAAGGAGGGGTGCAATAC-TAGGACTTCCCAGGAGGTC
260 AGATAGAATAAAAAGAAAATAATCCAAAAAGGAGAGGTGCAACACGT-GGACTTCCCAGGAGGTC
* * *
1246548 ACCCATCCTAGTACTACTCTCGC-CTAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGA
324 ACCCATCCTAGTACTACTCTAGCTC-AAGCACGCTTAACTGCGGAGTTAT-ATGGGATCCAGTGA
* **
1246612 ATTAGTGA-T-GTATGATCGCATCCGTCATGGTTTGCGCCCTTAATTTATTTAAGGCCTTCATTT
387 ATTAGT-ACTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCATTT
* * * ** * *
1246675 TCTTTCGACCCGTACTTGAGGGACTCGTAAAATTCGGATTCTACGACCCGAGCCTTTCTC
451 TCTTCCGACCAGTACTTAAGGGACTCCCAAAATTCAGATTCTACGACCCGAACCTTTCTC
1246735 CCCAAGTTCC
Statistics
Matches: 460, Mismatches: 45, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
528 3 0.01
529 438 0.95
530 18 0.04
531 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (529 bp):
CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAG
TTCTGATGGAATCCGGTGCATTAGTGCTGGTATGAGCGCACCCGTCATGCCCTGCGCCCTTAATT
TATTTAAGGCCTTCATTTTCTTCCAACCCATACTTAAGGGACTCGCAAAATTCAGATTCTACGAC
CCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGAAATACGTAAGTGTGCGTGTATTCGA
GATAGAATAAAAAGAAAATAATCCAAAAAGGAGAGGTGCAACACGTGGACTTCCCAGGAGGTCAC
CCATCCTAGTACTACTCTAGCTCAAGCACGCTTAACTGCGGAGTTATATGGGATCCAGTGAATTA
GTACTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCATTTTCTTC
CGACCAGTACTTAAGGGACTCCCAAAATTCAGATTCTACGACCCGAACCTTTCTCGGCTCCCCCA
CTCCAAGCA
Found at i:1247076 original size:303 final size:303
Alignment explanation
Indices: 1246223--1248946 Score: 3947
Period size: 303 Copynumber: 9.0 Consensus size: 303
1246213 CCACTCCAAG
* *
1246223 CACGAGGACTTCCCAGGAGGTCACTCATCCTAGTACTACTCTCTCCCAAGCACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
* *
1246288 AGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCCTGCGCCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
* * * * * *
1246353 TTTATTTAAGGCCTTCATTTTCTTCCAATCCATACTTAAGGGACTCGCAATATTCGAATTCTACG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * *
1246418 GCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATATGTACGTGTGCGTGTGTTC
196 ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
* *
1246483 GAGATAGAATAAAAAGAAAATTATCCAAAAAGGAGGGGTGCAA
261 GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* * *
1246526 TACTAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCTAAGCACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
* * * **
1246591 AGTTCTGATGGGATCCGGTGAATTAGTGAT-GTATGATCGCATCCGTCATGGTTTGCGCCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
* * * *
1246655 TTTATTTAAGGCCTTCATTTTCTTTCGACCCGTACTTGAGGGACTCGTAAAATTCGGATTCTACG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * * *
1246720 ACCCGAGCCTTTCTCCCCAAGTTCCCCACTCCATGCAGGCGGAATACGTACGTGTGTGTGTCTTC
196 ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
* * *
1246785 GAGATATAATAAAAAGAATATAATCCGAAAATGAGGGGTGCAA
261 GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* *
1246828 CACGAGGACTTCCGAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAGGCACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
** * * * * ***
1246893 AGTTCTGATGGGATCCAATGCATTAGTGTTGTTATGATCGTACTCGTCATGCCAAACGCCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
** * * *
1246958 TTTATTTAAGGCCTTCGTTTTCTTCAAACCCGTAATTAAGGGACTCGCAATATTCGAATTCTACG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * * * *
1247023 ACTCGAGCCTTTCTCCCCAAGTTCTCCACTCCAGGCAGGCGGAATATGTACGTGTGCGTGTCTTC
196 ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
* *
1247088 GAGATATAATAAAAAGAATATAATCCGAAAAGGAGGGGTGCAA
261 GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* *
1247131 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGAACTACTCTCGCCCAAGCACGCTTAAATGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
* * *
1247196 AGTTCTGATGGGATCCGGTGCAATAGTGCTGGTATGATCGCACTCGTCATGCCCTGCGCCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
* *
1247261 TTTATTTAAGGCCTTCGTTTTCTTCTGA-CCGTACTTAAGGGACTCGCAAAATTTGGATTCTACG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * * * * *
1247325 ACCCGAACCATTCTCGGTTCCCCAAGTACCCCACTCCAAGCAGGCGGATTACGTACATGTACTTG
196 ACCCGAACC-TT-TC---TCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTG
* * *
1247390 TATTCGAGATAGAATAAAAAGAAAATAATCCGAAAAGTAGGGGTACAA
256 TGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* * * *
1247438 CACGTGGACTTCCCAGCAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACCCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
** *
1247503 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGGTTTGCACCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
* * * * *
1247568 TTTATTTAAGGGCTTCATTTTCTTTCGACCCGTACTTGATGGACTCGCAAAATTCGGATTCTACG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * *
1247633 ACCCGAGCCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGTGTGTCTTC
196 ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
* * *
1247698 GAGATATAATAAAAA-AATATAATCCGAAAAGTAGGGGTGCAA
261 GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* * *
1247740 CACGAGGGCTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACCCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
*
1247805 AGTTCTGATAGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
* * *
1247870 TTTATTTAAGGCCTTCGTTTTCTTCCGACGCGTACTTAAGGGACTCGCAAAATTTGGATTCTTCG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * * *
1247935 ACCCGAACCTTTCTACCCC-AGTTCCCCACACTAGGCAGGCGGAATACGTACTTGTGCGTATGTT
196 ACCCGAACCTTTCT-CCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTT
* *
1247999 CAAGATAGAATAAAAAGAAAATAATCAGAAAAGGAGGGGTGCAA
260 CGAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* * * *
1248043 AACGTGGACTTCCCAGGAAGTCACCCATCCTAGTACTAGTCTCGCCCAAGCACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
* *
1248108 AGTTCTGATGGGAT-CGAATGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCGCTTA
66 AGTTCTGATGGGATCCG-GTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTA
*
1248172 ATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGTAAAATTCGGATTCTAC
130 ATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTAC
* * *
1248237 GACCCGAA--TTTCTCCCCAAGTACCCCACTCCAAGCAGGCGTAATACGTACGTGTGCGTGTGTT
195 GACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTT
**
1248300 CGAGATAGAATAAAAAGAAAATAATGTGAAAAGGAGGGGTGCAA
260 CGAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* * * *
1248344 CACGAGGACTTCCGAGGAGGTCAACCATCCTAGTACTACTCTCGCCCAGGCACGCTTAGCTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
*
1248409 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCCCACCCGTCATGCCTTGCGCCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
1248474 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTAAATT
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCG-------C--A--AAATT
* *
1248539 CGGATTCTACGACCCGAA--TTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATATGTACGTG
185 CGGATTCTACGACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTG
*
1248602 TGCTTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
250 TGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* * * * *
1248656 CACGAGGACATCCGAGGAGGTCTA-CCATCCTAGTACTACTCTCGCCCAGGCACACTTAACGGCG
1 CACGAGGACTTCCCAGGAGGTC-ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCG
1248720 GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTA
65 GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTA
* * * **
1248785 ATTTATTTAAGGCCTTTGTTTTCTTCTGACCCGTACTTAAGGGACTCGCAAAATTCAGATTCTTT
130 ATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTAC
* * * *
1248850 GACCCGAACCTTTCTTCCCAAATTCCCCACTCCATGCAGGCGGAATACGTATGTGTGCGTGTGTT
195 GACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTT
* *
1248915 CGACATAGAATAAAAAGAAAATAATTCGAAAA
260 CGAGATAGAATAAAAAGAAAATAATCCGAAAA
1248947 AGA
Statistics
Matches: 2177, Mismatches: 218, Indels: 52
0.89 0.09 0.02
Matches are distributed among these distances:
300 4 0.00
301 267 0.12
302 583 0.27
303 765 0.35
304 2 0.00
305 1 0.00
306 2 0.00
307 226 0.10
308 41 0.02
310 1 0.00
312 284 0.13
313 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (303 bp):
CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAA
Found at i:1248204 original size:605 final size:607
Alignment explanation
Indices: 1246223--1248946 Score: 3947
Period size: 605 Copynumber: 4.5 Consensus size: 607
1246213 CCACTCCAAG
* *
1246223 CACGAGGACTTCCCAGGAGGTCACTCATCCTAGTACTACTCTCTCCCAAGCACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
* *
1246288 AGTTCTGATGGAATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCCTGCGCCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
* * * * * *
1246353 TTTATTTAAGGCCTTCATTTTCTTCCAATCCATACTTAAGGGACTCGCAATATTCGAATTCTACG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * *
1246418 GCCCGAACCTTTCTCCCCAAGTACCCCACTCCAGGCAGGCGGAATATGTACGTGTGCGTGTGTTC
196 ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
* * * *
1246483 GAGATAGAATAAAAAGAAAATTATCCAAAAAGGAGGGGTGCAATACTAGGACTTCCCAGGAGGTC
261 GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* *
1246548 ACCCATCCTAGTACTACTCTCGCCTAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGAA
326 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA
* * ** *
1246613 TTAGTGAT-GTATGATCGCATCCGTCATGGTTTGCGCCCTTAATTTATTTAAGGCCTTCATTTTC
391 TTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTC
* * * *
1246677 TTTCGACCCGTACTTGAGGGACTCGTAAAATTCGGATTCTACGACCCGAGCC-TTTCTCCCCAAG
456 TTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACGACCCGAACCATTTCTCCCCAAG
* * * * * *
1246741 TTCCCCACTCCATGCAGGCGGAATACGTACGTGTGTGTGTCTTCGAGATATAATAAAAAGAATAT
521 TACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAAT
*
1246806 AATCCGAAAATGAGGGGTGCAA
586 AATCCGAAAAGGAGGGGTGCAA
* *
1246828 CACGAGGACTTCCGAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAGGCACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
** * * * * ***
1246893 AGTTCTGATGGGATCCAATGCATTAGTGTTGTTATGATCGTACTCGTCATGCCAAACGCCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
** * * *
1246958 TTTATTTAAGGCCTTCGTTTTCTTCAAACCCGTAATTAAGGGACTCGCAATATTCGAATTCTACG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * * * *
1247023 ACTCGAGCCTTTCTCCCCAAGTTCTCCACTCCAGGCAGGCGGAATATGTACGTGTGCGTGTCTTC
196 ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
* *
1247088 GAGATATAATAAAAAGAATATAATCCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
261 GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* *
1247153 ACCCATCCTAGAACTACTCTCGCCCAAGCACGCTTAAATGCGGAGTTCTGATGGGATCCGGTGCA
326 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA
* * *
1247218 ATAGTGCTGGTATGATCGCACTCGTCATGCCCTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTC
391 TTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTC
* *
1247283 TTCTGA-CCGTACTTAAGGGACTCGCAAAATTTGGATTCTACGACCCGAACCATTCTCGGTTCCC
456 TTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACGACCCGAACCATT-TC---TCCC
* * * * * *
1247347 CAAGTACCCCACTCCAAGCAGGCGGATTACGTACATGTACTTGTATTCGAGATAGAATAAAAAGA
517 CAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGA
* *
1247412 AAATAATCCGAAAAGTAGGGGTACAA
582 AAATAATCCGAAAAGGAGGGGTGCAA
* * * *
1247438 CACGTGGACTTCCCAGCAGGTCACCCATCCTAGTACTACTCTCACCCAAGCACCCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
** *
1247503 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGGTTTGCACCCTTAA
66 AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
* * * * *
1247568 TTTATTTAAGGGCTTCATTTTCTTTCGACCCGTACTTGATGGACTCGCAAAATTCGGATTCTACG
131 TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
* * *
1247633 ACCCGAGCCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGTGTGTCTTC
196 ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
* * * *
1247698 GAGATATAATAAAAA-AATATAATCCGAAAAGTAGGGGTGCAACACGAGGGCTTCCCAGGAGGTC
261 GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
* * *
1247762 ACCCATCCTAGTACTACTCTCACCCAAGCACCCTTAACTGCGGAGTTCTGATAGGATCCGGTGCA
326 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA
1247827 TTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTC
391 TTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTC
* * *
1247892 TTCCGACGCGTACTTAAGGGACTCGCAAAATTTGGATTCTTCGACCCGAACC-TTTCTACCCC-A
456 TTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACGACCCGAACCATTTCT-CCCCAA
* * * * * *
1247955 GTTCCCCACACTAGGCAGGCGGAATACGTACTTGTGCGTATGTTCAAGATAGAATAAAAAGAAAA
520 GTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAA
*
1248020 TAATCAGAAAAGGAGGGGTGCAA
585 TAATCCGAAAAGGAGGGGTGCAA
* * * *
1248043 AACGTGGACTTCCCAGGAAGTCACCCATCCTAGTACTAGTCTCGCCCAAGCACGCTTAACTGCGG
1 CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
* *
1248108 AGTTCTGATGGGAT-CGAATGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCGCTTA
66 AGTTCTGATGGGATCCG-GTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTA
*
1248172 ATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGTAAAATTCGGATTCTAC
130 ATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTAC
* * *
1248237 GACCCGAA--TTTCTCCCCAAGTACCCCACTCCAAGCAGGCGTAATACGTACGTGTGCGTGTGTT
195 GACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTT
** *
1248300 CGAGATAGAATAAAAAGAAAATAATGTGAAAAGGAGGGGTGCAACACGAGGACTTCCGAGGAGGT
260 CGAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGT
* * *
1248365 CAACCATCCTAGTACTACTCTCGCCCAGGCACGCTTAGCTGCGGAGTTCTGATGGGATCCGGTGC
325 CACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGC
*
1248430 ATTAGTGCTGGTATGATCCCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTT
390 ATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTT
* * * *
1248495 CTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTAAATTCGGATTCTACGACCCGAATTT
455 CTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATT--CTAC-GA--C-CCGAACC--ATTT
* *
1248560 CTCCCCAAGTACCCCACTCCAGGCAGGCGGAATATGTACGTGTGCTTGTGTTCGAGATAGAATAA
512 CTCCCCAAGTACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAA
1248625 AAAGAAAATAATCCGAAAAGGAGGGGTGCAA
577 AAAGAAAATAATCCGAAAAGGAGGGGTGCAA
* * * * *
1248656 CACGAGGACATCCGAGGAGGTCTA-CCATCCTAGTACTACTCTCGCCCAGGCACACTTAACGGCG
1 CACGAGGACTTCCCAGGAGGTC-ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCG
1248720 GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTA
65 GAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTA
* * * **
1248785 ATTTATTTAAGGCCTTTGTTTTCTTCTGACCCGTACTTAAGGGACTCGCAAAATTCAGATTCTTT
130 ATTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTAC
* * * *
1248850 GACCCGAACCTTTCTTCCCAAATTCCCCACTCCATGCAGGCGGAATACGTATGTGTGCGTGTGTT
195 GACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTT
* *
1248915 CGACATAGAATAAAAAGAAAATAATTCGAAAA
260 CGAGATAGAATAAAAAGAAAATAATCCGAAAA
1248947 AGA
Statistics
Matches: 1897, Mismatches: 198, Indels: 38
0.89 0.09 0.02
Matches are distributed among these distances:
603 65 0.03
604 204 0.11
605 659 0.35
606 63 0.03
607 4 0.00
608 2 0.00
609 177 0.09
610 373 0.20
612 4 0.00
613 265 0.14
614 3 0.00
615 78 0.04
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (607 bp):
CACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGG
AGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAA
TTTATTTAAGGCCTTCGTTTTCTTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACG
ACCCGAACCTTTCTCCCCAAGTTCCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTC
GAGATAGAATAAAAAGAAAATAATCCGAAAAGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC
ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCA
TTAGTGCTGGTATGATCGCACCCGTCATGCCTTGCGCCCTTAATTTATTTAAGGCCTTCGTTTTC
TTCCGACCCGTACTTAAGGGACTCGCAAAATTCGGATTCTACGACCCGAACCATTTCTCCCCAAG
TACCCCACTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAAT
AATCCGAAAAGGAGGGGTGCAA
Done.