genome.fa.s4579.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004579.1 Hibiscus syriacus cultivar Beakdansim tig00010217_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79293

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2581--3504	201	4.6	199	86	4	1238	34	13	12	39	1.83
2581--3505	399	2.3	398	88	3	1353	34	13	12	39	1.83
6926--6974	20	2.4	20	93	3	80	24	16	16	42	1.87
6944--7719	199	3.9	200	87	2	1093	33	15	12	39	1.84
8689--10123	718	2.0	718	95	0	2609	32	17	18	31	1.94
11042--11090	19	2.7	18	87	6	71	46	18	0	34	1.49
12608--12636	14	2.0	15	93	6	51	17	27	0	55	1.42
14557--14987	223	1.9	223	91	0	702	37	20	6	35	1.78
15248--15325	32	2.4	32	95	0	147	47	7	10	34	1.66
19863--19922	26	2.2	27	91	5	95	46	3	8	41	1.50
21639--21704	2	33.0	2	100	0	132	50	0	0	50	1.00
23545--23584	3	12.7	3	89	10	62	62	0	0	37	0.95
23951--24183	42	5.6	42	79	7	208	33	19	19	27	1.96
23951--24183	84	2.8	84	79	8	242	33	19	19	27	1.96
24107--24626	216	2.4	216	86	4	692	31	18	16	33	1.93
26131--26160	5	6.0	5	100	0	60	60	20	0	20	1.37
32999--33123	2	67.0	2	75	13	115	48	0	0	50	1.06
35306--35391	3	29.3	3	95	4	158	65	0	0	34	0.93
35682--36136	91	5.0	91	89	1	689	25	21	16	36	1.94
38175--38286	16	6.8	17	73	17	60	4	16	0	79	0.89
38177--38294	19	5.9	19	73	14	71	4	17	0	77	0.92
38175--38315	17	7.9	17	71	17	83	4	19	0	76	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38173--38244	29	2.4	30	82	11	87	4	15	0	80	0.86
38177--38262	38	2.3	38	80	8	104	3	16	0	80	0.85
38194--38288	22	4.4	20	70	20	68	4	15	0	80	0.87
45024--45063	21	2.0	21	90	5	64	57	17	12	12	1.65
45751--45792	5	8.4	5	97	0	75	38	19	19	23	1.93
46645--46708	24	2.6	23	71	11	56	50	6	9	34	1.60
52325--52462	21	6.7	21	79	5	147	22	23	15	39	1.92
52303--52463	62	2.6	62	79	8	161	23	23	15	37	1.93
52324--52462	41	3.4	41	84	4	172	23	23	15	38	1.92
53336--53389	24	2.2	24	93	0	90	20	18	20	40	1.91
55900--55954	20	2.8	19	86	2	65	41	18	18	21	1.90
55907--56076	19	9.8	17	73	20	88	45	18	22	12	1.83
55945--56001	14	3.7	14	70	20	51	43	17	24	14	1.86
55927--56051	33	3.8	33	96	0	223	45	17	24	12	1.83
55959--56076	52	2.3	51	78	7	130	46	18	23	11	1.81
56216--56252	14	2.6	14	91	0	65	45	21	0	32	1.52
58055--58149	33	2.8	33	87	1	127	47	24	18	9	1.78
58055--58114	19	3.4	19	71	21	67	46	23	20	10	1.80
58159--58247	38	2.5	34	81	15	108	7	22	20	49	1.74
58177--58253	19	4.0	19	88	3	118	9	24	16	49	1.75
58342--58706	94	4.1	94	82	10	467	46	18	12	22	1.83
58458--58632	83	2.1	82	91	1	278	45	18	13	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58365--58695	177	1.9	173	89	3	511	46	18	13	21	1.84
59112--59160	18	2.7	18	96	0	89	12	12	44	30	1.78
60415--60521	20	5.8	19	73	14	98	47	19	21	11	1.80
60517--60588	20	4.0	19	70	18	64	12	23	20	43	1.86
61135--61228	20	4.7	20	77	2	107	21	19	18	41	1.90
61135--61228	41	2.3	40	81	1	107	21	19	18	41	1.90
61225--61292	21	3.3	21	83	4	93	41	19	22	17	1.91
61218--61311	41	2.3	41	88	5	136	37	20	23	19	1.94
61234--61311	21	3.8	21	78	11	81	39	20	24	15	1.91
62336--62689	192	1.8	193	84	5	484	38	12	10	37	1.78
65095--65563	233	2.0	233	98	0	902	36	20	12	30	1.90
70338--70374	14	2.5	15	91	4	58	45	5	2	45	1.40
74268--74321	19	2.8	19	85	0	72	31	0	1	66	1.02
74259--74321	22	2.8	22	85	2	81	28	0	3	68	1.05
74269--74321	3	19.0	3	81	14	60	32	0	1	66	1.03
75640--75682	16	2.6	16	79	17	52	25	4	0	69	1.07
75858--75905	19	2.6	18	83	9	60	33	0	2	64	1.05

Tables:   1

The End!