genome.fa.s458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000458.1 Hibiscus syriacus cultivar Beakdansim tig00000848_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149762

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1124--1243	58	2.1	58	82	3	143	30	23	16	30	1.96
13199--13480	131	2.2	131	88	3	433	39	15	12	31	1.85
18583--18626	23	2.0	23	86	13	65	15	27	34	22	1.95
19049--19088	16	2.4	17	83	4	55	22	5	25	47	1.71
20474--20502	13	2.1	14	93	6	51	51	0	13	34	1.42
24906--24948	21	2.0	22	86	4	61	23	13	27	34	1.93
25410--25449	16	2.4	17	83	4	55	22	2	25	50	1.62
26169--26256	23	3.8	23	74	14	90	19	22	25	32	1.97
26882--26910	13	2.1	14	93	6	51	51	0	13	34	1.42
31850--31889	16	2.4	17	83	4	55	22	2	25	50	1.62
33304--33332	13	2.1	14	93	6	51	51	0	13	34	1.42
33390--33431	22	2.0	21	85	4	57	21	19	33	26	1.97
36979--37014	16	2.2	16	90	0	54	66	2	16	13	1.36
37826--37866	21	2.0	21	90	9	66	17	29	31	21	1.96
38289--38328	16	2.4	17	83	4	55	22	2	25	50	1.62
39741--39769	13	2.1	14	93	6	51	51	0	13	34	1.42
39816--39857	22	2.0	21	85	4	57	21	19	33	26	1.97
41120--41184	30	2.1	32	83	8	82	50	6	0	43	1.27
41120--41202	27	2.8	30	78	12	82	50	4	0	44	1.23
41648--41762	30	3.9	29	72	11	90	31	13	19	35	1.91
45042--45090	3	15.7	3	82	4	53	61	0	0	38	0.96
45055--45090	18	2.0	18	94	0	63	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45488--45612	30	4.1	30	86	2	169	19	28	12	40	1.88
47068--47142	30	2.5	30	89	2	116	29	21	25	24	1.99
48685--48715	16	1.9	16	93	0	53	48	25	12	12	1.77
48771--48846	23	3.3	23	81	0	98	26	25	19	28	1.99
50555--50584	7	4.3	7	100	0	60	13	0	40	46	1.43
50631--50693	11	5.9	11	69	14	51	36	1	3	58	1.23
54785--54834	23	2.2	23	92	0	82	38	8	22	32	1.83
54840--55542	199	3.5	195	81	7	736	30	14	14	40	1.86
58043--58906	199	4.3	199	84	3	1087	28	13	15	42	1.84
58043--58900	398	2.2	400	89	1	1328	28	13	15	42	1.85
61508--61549	15	2.8	15	88	0	66	26	2	52	19	1.58
61897--62597	199	3.5	199	94	0	1231	27	14	15	41	1.87
62943--62991	19	2.6	19	87	9	66	55	12	2	30	1.48
64450--64488	18	2.2	18	95	0	69	5	41	0	53	1.23
65166--65222	24	2.5	21	76	17	60	49	7	1	42	1.40
66180--66218	18	2.2	18	86	9	53	41	7	5	46	1.55
66331--66355	5	5.0	5	100	0	50	60	20	0	20	1.37
66474--66522	19	2.6	20	87	12	77	38	18	0	42	1.50
67611--67655	23	2.0	23	86	0	63	26	28	24	20	1.99
67634--67937	149	2.0	149	98	0	590	34	20	17	27	1.95
68740--68774	18	1.9	18	88	11	54	22	17	5	54	1.64
69357--69401	21	2.1	21	87	0	63	15	24	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72535--72579	23	2.0	23	86	0	63	26	28	24	20	1.99
74134--74178	21	2.1	21	87	0	63	15	24	28	31	1.96
74876--75697	182	4.8	165	76	12	716	27	15	12	44	1.82
75156--75477	163	2.0	163	86	2	459	27	13	12	46	1.79
74876--76023	346	3.3	345	84	5	1418	27	15	12	44	1.82
75319--76186	182	4.8	183	87	2	1169	27	15	13	43	1.84
75933--75973	21	1.9	22	90	5	66	21	14	9	53	1.70
75319--76152	363	2.3	365	87	3	1180	27	15	13	44	1.84
76115--76153	20	1.9	21	89	5	62	15	15	23	46	1.83
78119--78279	30	5.4	30	90	0	250	30	18	22	27	1.98
78264--78371	27	3.9	27	80	7	126	32	13	28	25	1.94
78289--78402	30	3.9	30	78	6	126	34	10	26	28	1.90
78271--78401	57	2.3	57	91	0	208	33	12	25	27	1.93
78624--79229	324	1.9	325	95	0	1106	23	17	24	34	1.96
82998--83058	23	2.6	24	79	10	72	57	0	4	37	1.20
84023--84115	39	2.3	39	80	7	98	54	2	0	43	1.12
84099--84131	14	2.4	14	90	10	50	51	0	0	48	1.00
85146--85192	20	2.2	22	85	7	62	42	0	2	55	1.12
87224--87265	15	2.8	15	92	0	66	26	9	21	42	1.83
93968--94039	3	23.7	3	86	8	101	30	0	2	66	1.06
94465--94512	21	2.3	21	78	7	53	56	25	16	2	1.51
96135--96184	24	2.1	23	85	3	64	34	2	2	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96707--96731	9	2.8	9	100	0	50	48	0	0	52	1.00
99487--99518	15	2.1	15	94	0	55	25	18	9	46	1.79
106812--106858	10	4.7	10	84	10	69	87	0	12	0	0.55
106816--106859	7	6.0	7	84	10	52	86	0	13	0	0.57
106813--106856	11	3.8	11	91	8	70	88	0	11	0	0.51
106812--106858	19	2.4	19	89	7	67	87	0	12	0	0.55
107853--108414	93	6.0	93	93	1	939	30	14	19	35	1.92
107848--108607	279	2.6	287	88	6	1110	30	14	19	34	1.92
108322--108529	115	1.8	115	92	0	353	32	14	19	33	1.92
108225--108688	208	2.2	208	95	0	831	31	14	20	34	1.92
108433--108622	93	2.0	93	89	2	292	29	14	20	35	1.92
108864--109131	131	2.0	131	99	0	527	32	15	17	35	1.91
109445--109509	20	3.3	20	68	12	53	49	9	21	20	1.76
109413--109509	40	2.5	40	86	11	130	47	10	21	20	1.80
109453--109517	20	3.3	20	66	12	53	43	10	18	27	1.83
109576--109620	24	1.9	23	82	13	56	51	6	24	17	1.70
109452--109924	113	4.2	109	83	7	626	37	13	18	30	1.90
109450--109924	225	2.1	219	87	6	668	37	13	18	30	1.90
110218--110269	3	17.7	3	88	4	79	30	0	3	65	1.10
110693--110740	21	2.3	21	78	7	53	56	25	16	2	1.51
111663--111712	22	2.2	22	85	7	64	42	4	0	54	1.19
113111--113166	2	28.0	2	100	0	112	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119175--119850	72	9.5	71	81	4	657	27	15	17	38	1.90
119175--119850	213	3.2	210	80	7	677	27	15	17	38	1.90
120799--121185	184	2.1	184	89	3	604	41	3	8	46	1.51
121614--121646	14	2.4	14	90	5	50	48	24	3	24	1.65
122656--123004	40	8.6	40	72	9	203	31	15	16	35	1.91
122691--123017	120	2.7	122	79	8	337	30	16	16	36	1.91
122851--123017	41	4.1	40	80	6	192	31	18	16	32	1.94
122650--123017	81	4.5	81	71	8	250	31	16	16	35	1.91
125844--125886	20	2.2	20	91	0	68	32	11	20	34	1.89
130090--130140	23	2.2	23	85	0	66	19	27	23	29	1.98
130985--131025	22	2.0	22	85	9	59	29	34	2	34	1.71
131933--132062	43	3.0	43	85	1	152	25	23	16	34	1.95
133182--133376	48	4.1	48	80	7	227	26	23	13	36	1.92
133194--133376	96	1.9	96	88	2	278	24	21	14	39	1.91
142573--142613	2	20.5	2	100	0	82	51	0	48	0	1.00
149671--149753	22	3.7	22	85	3	103	21	26	28	22	1.99

Tables:   1

The End!