genome.fa.s4580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004580.1 Hibiscus syriacus cultivar Beakdansim tig00010218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65104

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8857--8907	16	3.1	17	85	5	77	25	27	31	15	1.96
8907--8963	20	3.0	20	85	7	66	12	24	45	17	1.83
10816--10847	13	2.5	13	94	0	55	31	0	15	53	1.43
20852--20944	21	4.5	21	78	4	100	39	18	24	17	1.91
20852--20944	41	2.3	41	100	0	186	39	18	24	17	1.91
20871--21005	41	3.3	41	83	6	141	39	20	20	19	1.93
20933--21026	20	4.7	20	80	2	89	35	23	17	24	1.95
21194--21237	22	2.0	22	90	0	70	20	43	15	20	1.88
21501--21538	20	1.9	20	88	0	58	13	15	21	50	1.78
22857--22901	18	2.5	18	85	0	63	26	42	15	15	1.87
23380--23446	20	3.4	20	81	2	73	38	23	22	14	1.92
23435--23492	14	3.9	14	77	16	62	48	24	17	10	1.78
23419--23509	32	2.8	33	93	3	157	47	21	18	12	1.81
23419--23514	19	5.6	18	67	25	66	45	21	19	12	1.83
23533--23640	19	5.9	18	75	15	80	12	18	23	45	1.84
23525--23599	32	2.3	33	95	2	134	10	16	25	48	1.78
23526--23583	14	3.9	14	79	16	71	8	15	25	50	1.73
23593--23638	20	2.4	19	92	3	74	15	23	26	34	1.94
25511--25546	14	2.6	14	90	0	54	30	0	22	47	1.52
25663--25711	19	2.6	19	93	0	89	48	12	20	18	1.79
25719--25769	20	2.5	20	96	0	93	17	23	25	33	1.96
26135--26170	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26287--26354	19	3.8	19	85	14	101	47	16	23	13	1.81
26373--26430	20	2.9	20	94	0	98	17	22	22	37	1.93
26797--26832	14	2.6	14	90	0	54	30	0	22	47	1.52
26916--26969	19	2.8	19	97	0	99	35	25	24	14	1.94
26966--27033	19	3.8	19	83	14	92	47	14	23	14	1.82
27052--27109	20	2.9	20	94	0	98	17	22	22	37	1.93
25718--27296	679	2.4	660	96	2	2892	32	13	19	34	1.91
28162--28220	24	2.5	24	82	0	73	28	16	18	35	1.93
29380--29510	19	7.7	19	66	23	94	42	19	22	14	1.88
29380--29506	33	3.8	33	88	4	202	42	19	22	14	1.88
29381--29513	66	2.0	66	97	0	248	41	19	22	16	1.90
29506--29548	20	2.2	20	87	4	61	16	18	23	41	1.89
29534--29567	14	2.4	14	85	0	50	8	23	20	47	1.78
29689--29725	14	2.6	14	91	0	65	45	24	0	29	1.53
31120--31203	42	2.0	42	80	0	96	23	16	39	20	1.92
33229--33326	33	2.9	33	87	1	133	40	25	22	11	1.87
33204--33407	19	11.1	19	79	13	212	44	21	21	12	1.85
33403--33448	20	2.4	19	85	7	65	10	15	26	47	1.78
33299--33407	58	1.9	58	94	1	193	46	21	20	11	1.82
34000--34052	20	2.7	20	93	0	88	26	20	28	24	1.99
34061--34110	20	2.5	20	96	0	91	26	18	24	32	1.97
34001--34117	61	1.9	61	83	0	153	23	17	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34001--34135	61	2.2	61	80	2	146	22	19	24	33	1.97
38613--38755	75	1.9	75	82	2	180	41	15	9	33	1.78
44661--45010	187	1.9	185	82	3	443	28	18	13	40	1.88
45443--45501	31	1.9	31	96	0	109	23	22	13	40	1.89
54531--54574	23	1.9	23	100	0	88	45	11	20	22	1.83
61666--61712	21	2.2	21	84	0	58	21	23	17	38	1.93

Tables:   1

The End!