genome.fa.s4582.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004582.1 Hibiscus syriacus cultivar Beakdansim tig00010223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111260

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104--147	22	2.0	22	86	8	63	22	18	6	52	1.69
6349--6375	2	13.5	2	100	0	54	48	0	0	51	1.00
6527--6656	68	1.9	68	85	6	183	25	23	14	36	1.93
7004--7286	157	1.8	157	92	0	485	29	22	11	36	1.89
6976--7286	79	3.9	79	89	0	444	29	22	10	36	1.88
7737--7806	35	2.0	35	85	0	95	24	24	17	34	1.96
8887--8928	12	3.6	12	81	18	52	59	4	0	35	1.19
9100--9169	30	2.3	30	82	0	86	28	22	2	45	1.67
9206--9237	2	16.5	2	93	6	57	50	0	0	50	1.00
15204--15482	74	3.8	74	94	3	492	42	7	31	18	1.78
15201--15482	146	1.9	146	94	1	503	42	7	31	18	1.77
18378--18429	24	2.2	24	92	0	86	25	13	32	28	1.93
18580--18702	30	4.3	29	77	12	89	43	5	0	50	1.31
18581--18731	57	2.7	56	78	13	148	41	6	0	51	1.33
18724--18763	2	20.0	2	100	0	80	50	0	0	50	1.00
18807--18993	29	6.3	30	75	16	158	55	1	6	36	1.35
18807--18993	59	3.1	59	76	11	152	55	1	6	36	1.35
21591--21620	13	2.2	14	94	5	53	40	13	26	20	1.89
21873--22075	15	13.5	15	81	2	237	63	12	1	22	1.38
24309--24529	102	2.2	102	81	0	244	30	11	23	35	1.90
24346--24562	102	2.1	101	81	2	245	29	11	23	35	1.89
24338--24603	102	2.6	102	78	2	239	31	12	22	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25177--25258	39	2.1	38	86	4	119	35	2	25	36	1.70
25359--25934	191	3.0	191	77	7	569	33	17	15	33	1.91
35947--35986	17	2.4	17	87	8	55	45	15	12	27	1.82
39490--39546	25	2.3	25	81	9	71	31	1	19	47	1.60
39524--39561	19	2.1	18	85	9	51	31	2	15	50	1.58
39498--39568	29	2.4	30	83	9	83	30	4	15	49	1.64
48534--48576	10	4.3	10	90	0	59	0	39	32	27	1.57
48537--48576	15	2.7	15	88	0	62	0	40	32	27	1.57
48573--48651	6	13.2	6	100	0	158	0	16	49	34	1.46
48926--48980	22	2.5	22	75	0	56	29	9	23	38	1.85
54507--54555	5	9.8	5	93	0	71	2	40	34	22	1.66
54553--54637	6	14.2	6	94	0	125	5	16	49	28	1.69
54912--54966	22	2.5	22	75	0	56	29	9	23	38	1.85
57700--57846	2	74.5	2	95	2	271	50	0	0	48	1.05
59044--59094	20	2.5	21	87	3	68	29	33	7	29	1.85
59043--59117	21	3.6	21	78	1	71	29	29	13	28	1.94
59175--59233	20	3.0	20	82	7	75	33	33	10	22	1.87
62238--62268	16	1.9	16	93	0	53	19	0	0	80	0.71
62270--62318	25	2.0	25	84	7	66	67	12	2	18	1.32
62926--62994	31	2.2	31	100	0	138	17	17	23	42	1.89
64266--64424	73	2.2	73	89	0	237	25	18	21	35	1.95
81722--81897	56	3.2	55	74	8	171	27	25	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82101--82126	11	2.4	11	100	0	52	57	26	7	7	1.54
83323--83399	40	1.9	39	84	7	102	31	5	31	32	1.80
86002--86053	21	2.3	23	84	15	65	48	0	3	48	1.20
86153--86216	21	2.9	23	74	9	69	53	0	0	46	1.00
86205--86270	24	2.6	25	81	9	82	43	3	0	53	1.16
86236--86266	16	1.9	16	93	0	53	41	3	0	54	1.16
90473--90535	22	2.9	22	86	11	94	36	4	9	49	1.57
90906--91014	45	2.4	45	93	3	184	37	5	25	31	1.79
91400--91424	12	2.1	12	100	0	50	24	16	24	36	1.94
97187--97227	22	1.9	21	90	5	64	34	4	12	48	1.62
97596--97704	45	2.4	45	92	3	175	38	5	24	31	1.78
106556--106634	14	6.0	13	70	22	58	56	2	0	40	1.12
106570--106600	15	2.1	15	94	5	55	64	3	0	32	1.09
106941--106981	21	2.0	21	85	0	55	39	24	14	21	1.91

Tables:   1

The End!