genome.fa.s4583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004583.1 Hibiscus syriacus cultivar Beakdansim tig00010233_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67921

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4350--4401	14	3.7	14	100	0	104	28	28	21	21	1.98
4582--4610	2	14.5	2	100	0	58	51	0	0	48	1.00
6585--6625	18	2.3	18	91	0	64	4	29	24	41	1.75
13226--13250	10	2.5	10	100	0	50	8	0	28	64	1.22
21323--21371	14	3.5	13	78	13	53	46	8	16	28	1.75
24900--25925	520	2.0	520	82	6	1283	34	14	15	34	1.89
24900--25906	260	3.9	258	79	7	947	35	14	15	34	1.88
26283--26395	44	2.6	44	92	0	190	30	20	18	30	1.96
26313--26471	44	3.6	44	81	1	158	29	18	18	33	1.94
26833--26952	6	20.0	6	69	14	63	77	0	15	6	0.97
26832--26877	19	2.4	19	85	3	56	80	0	15	4	0.86
26834--26953	7	16.7	7	68	20	54	78	0	15	6	0.95
26840--26965	30	4.3	30	74	19	88	77	0	14	7	0.97
26898--26964	24	2.9	23	78	14	75	79	0	13	7	0.94
26895--26985	31	3.0	31	80	7	89	75	0	16	7	1.02
26833--26996	33	4.9	32	72	20	86	75	0	16	7	1.02
28536--28599	27	2.4	27	94	0	110	26	15	18	39	1.91
29291--29337	14	3.3	14	81	3	58	29	12	6	51	1.65
29291--29346	14	3.9	15	78	2	53	26	16	8	48	1.75
29289--29351	29	2.3	27	78	13	65	26	14	7	50	1.70
29680--30525	138	6.1	138	83	3	979	29	13	14	42	1.84
29680--30525	276	3.1	276	85	2	1081	29	13	14	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31725--31843	48	2.6	45	82	8	141	31	21	9	37	1.85
31952--32080	59	2.2	59	91	0	204	29	26	17	27	1.97
34943--35435	183	2.7	183	94	0	862	33	17	15	33	1.91
35826--35888	23	2.7	23	87	0	90	38	19	4	38	1.73
37479--37562	3	28.0	3	75	0	78	23	32	5	38	1.79
37498--37574	36	2.1	36	92	0	127	20	33	9	36	1.85
37492--37574	12	6.9	12	87	0	94	21	33	8	36	1.84
39193--39560	178	2.1	178	94	1	641	31	17	14	36	1.90
39370--40567	200	6.0	200	97	0	2226	31	16	13	37	1.88
40702--40746	19	2.4	19	92	0	72	57	8	2	31	1.41
42458--42523	33	2.0	33	90	0	105	22	48	0	28	1.51
42557--42600	21	2.1	21	91	0	70	15	31	11	40	1.83
44815--44857	20	2.3	18	85	14	61	20	16	11	51	1.75
44820--44866	20	2.4	19	82	10	67	19	17	10	53	1.72
44999--45045	20	2.3	20	89	10	78	17	17	10	55	1.69
45094--46035	231	4.1	229	96	2	1717	39	8	7	44	1.64
46472--46531	27	2.3	27	82	2	77	21	11	0	66	1.23
47717--47749	17	2.0	17	88	5	50	21	18	18	42	1.89
51124--52410	416	3.0	426	90	4	2058	38	11	15	34	1.84
52794--52822	2	14.5	2	100	0	58	51	0	0	48	1.00
63616--63669	24	2.2	24	93	0	90	12	16	22	48	1.80
65737--65783	2	24.5	2	91	8	80	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67506--67572	35	1.9	35	84	6	91	31	19	20	28	1.97

Tables:   1

The End!