genome.fa.s4584.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004584.1 Hibiscus syriacus cultivar Beakdansim tig00010236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59897

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5821--5926	49	2.3	47	82	14	132	52	13	1	32	1.51
6126--6251	50	2.5	50	98	0	243	24	14	25	35	1.93
9618--9738	59	2.1	59	90	0	188	35	23	17	23	1.95
14061--14105	23	2.0	22	91	4	72	75	4	0	20	0.97
14782--14811	15	2.0	15	100	0	60	46	6	33	13	1.69
17201--17414	110	1.9	110	96	0	392	35	17	18	28	1.93
20211--20290	40	2.0	40	82	0	97	25	26	27	21	1.99
20522--20568	21	2.2	21	96	0	85	27	8	14	48	1.73
21882--21935	15	3.6	15	82	5	65	29	5	22	42	1.76
22154--22205	24	2.2	24	85	0	68	19	19	28	32	1.96
23773--23843	37	1.9	37	97	0	133	40	15	11	32	1.83
24486--24609	33	3.7	32	76	18	101	24	10	0	64	1.30
24547--24586	3	13.3	3	83	0	53	30	2	2	65	1.19
24634--24730	30	3.1	30	73	19	92	17	8	1	73	1.13
29206--29245	15	2.7	15	84	0	53	35	2	20	42	1.65
29413--29562	24	6.3	24	77	10	107	22	24	24	30	1.99
29430--29564	24	5.7	24	80	6	118	22	23	22	30	1.99
31030--31068	19	2.1	19	90	0	60	25	5	25	43	1.75
40291--40328	19	2.0	20	84	5	51	31	10	2	55	1.48
44413--44540	53	2.4	53	92	5	222	28	7	28	34	1.85
44940--45205	82	3.2	82	79	2	273	31	21	15	31	1.95
47420--47475	17	3.3	17	82	7	60	21	5	1	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51737--52171	45	9.6	45	82	5	468	26	17	11	45	1.82
51723--52171	135	3.3	135	87	1	569	26	17	11	44	1.82
55095--55147	27	2.0	26	88	3	79	39	0	1	58	1.09
59707--59897	44	4.3	45	81	9	232	24	20	13	41	1.88
59705--59897	89	2.2	89	87	6	277	23	20	14	41	1.89

Tables:   1

The End!