genome.fa.s4585.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004585.1 Hibiscus syriacus cultivar Beakdansim tig00010239_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66169

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4015--4175	81	2.0	80	97	1	304	29	8	21	40	1.81
4021--4145	39	3.1	39	62	18	94	31	6	21	40	1.78
4889--5049	32	5.1	32	80	10	190	27	17	19	35	1.94
4889--5044	63	2.5	64	87	6	221	27	17	19	35	1.94
14129--14587	125	3.7	125	83	4	543	27	20	21	30	1.98
14761--14833	37	1.9	38	83	2	94	38	9	19	32	1.84
22678--22811	60	2.2	61	81	4	155	15	23	36	24	1.94
23041--23096	17	3.4	17	73	14	62	42	0	0	57	0.99
23031--23098	33	2.2	31	86	7	93	38	0	0	61	0.96
23045--23106	33	1.9	32	90	3	97	43	0	0	56	0.99
23046--23127	15	5.3	15	71	15	60	40	0	0	59	0.97
23073--23141	29	2.3	31	78	9	72	39	1	2	56	1.23
24836--24916	42	1.9	42	87	0	117	23	33	17	25	1.96
24912--24984	21	3.5	21	88	0	101	19	34	26	20	1.96
25530--25568	19	2.1	19	85	9	53	43	0	10	46	1.37
25977--26869	139	6.4	139	90	1	1331	33	23	20	22	1.97
25977--26869	279	3.2	279	89	0	1360	33	23	20	22	1.97
31774--31827	20	2.8	19	83	10	65	55	1	0	42	1.10
32472--32525	26	2.1	25	82	3	63	44	29	0	25	1.54
34631--35004	186	2.0	186	100	0	748	27	20	18	33	1.96
35006--35036	16	1.9	16	100	0	62	32	22	25	19	1.97
36185--36243	3	19.3	3	79	10	66	35	0	1	62	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36522--36557	18	2.0	18	88	0	54	63	0	33	2	1.08
44973--45070	9	10.8	9	75	19	80	78	0	11	10	0.96
45010--45036	13	2.1	13	100	0	54	77	0	7	14	0.97
45000--45072	30	2.5	31	79	18	84	79	0	10	9	0.94
44974--45098	39	3.3	37	78	12	121	79	0	11	8	0.98
44973--45098	9	15.5	8	75	18	68	79	0	11	8	0.98
45054--45086	14	2.4	14	94	0	57	84	0	15	0	0.61
44965--45098	16	9.1	13	71	21	54	79	0	11	8	0.99
46201--46356	55	2.8	55	88	5	244	31	15	25	28	1.96
46336--46917	52	11.2	52	93	0	948	29	16	25	28	1.96
46311--46988	52	12.9	53	89	2	217	30	16	25	28	1.97
47185--47242	3	19.3	3	76	13	57	36	0	1	62	1.06
53856--53971	35	3.3	34	83	11	119	33	20	17	28	1.95
53909--53987	20	4.2	20	69	21	62	30	21	18	29	1.97
53909--54031	55	2.2	55	88	0	174	30	22	17	30	1.96
53977--54138	35	4.7	34	76	9	141	32	19	21	27	1.97
53857--54106	18	14.2	18	66	18	87	32	20	19	28	1.96
53964--54138	69	2.5	70	79	6	187	30	20	21	28	1.98
54616--54703	3	29.3	3	86	8	126	32	2	0	64	1.06
56344--56405	26	2.4	26	86	7	83	16	6	14	62	1.50
58579--58634	20	2.8	19	78	7	67	28	16	32	23	1.96
59028--59250	55	4.0	55	89	1	322	34	13	20	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59043--59261	109	2.0	110	88	1	323	35	11	19	33	1.87
59461--59919	68	6.8	68	94	0	785	30	14	25	29	1.95
59870--60106	81	2.9	81	85	3	291	35	13	22	27	1.92
60132--60350	45	4.8	45	87	3	287	47	6	20	25	1.74
60132--60350	91	2.4	90	87	3	298	47	6	20	25	1.74
60187--60483	91	3.3	90	79	3	274	43	9	20	26	1.82
60134--60395	136	1.9	136	81	3	312	45	8	20	25	1.79
60323--60490	45	3.7	45	81	2	185	40	11	20	27	1.86
62730--62811	41	2.0	41	95	0	146	39	17	12	31	1.86
64313--64360	16	2.8	17	78	9	53	58	0	14	27	1.37

Tables:   1

The End!