genome.fa.s4586.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004586.1 Hibiscus syriacus cultivar Beakdansim tig00010242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50326

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395--434	20	2.0	20	85	0	53	42	12	5	40	1.64
396--503	53	2.0	53	94	0	189	50	12	4	32	1.61
449--487	20	2.0	20	89	0	60	43	17	2	35	1.63
7920--7966	2	23.5	2	100	0	94	48	0	0	51	1.00
11706--11791	31	2.8	31	75	7	102	20	27	26	24	1.99
15133--15218	25	3.5	25	78	12	81	22	2	24	51	1.60
17634--17680	14	3.4	14	76	5	51	34	6	19	40	1.77
17933--17977	21	2.1	21	84	8	56	57	6	6	28	1.50
18071--18130	23	2.8	20	72	16	57	23	8	28	40	1.83
19013--19037	4	6.2	4	100	0	50	76	0	0	24	0.80
19053--19112	30	2.0	30	100	0	120	60	10	6	23	1.52
19864--19888	9	2.8	9	100	0	50	12	20	0	68	1.21
20367--20578	102	2.1	102	82	1	255	26	13	24	35	1.92
21200--21828	169	3.7	170	80	3	619	30	15	18	35	1.92
22593--22666	35	2.1	35	89	0	112	33	29	27	9	1.88
22726--22849	24	5.2	24	86	5	81	41	20	14	24	1.89
22743--22858	24	4.8	24	90	6	173	38	19	16	25	1.92
22774--22876	48	2.1	48	87	3	145	41	19	15	23	1.89
27778--27826	19	2.5	21	78	18	61	38	6	16	38	1.73
27837--27897	21	2.9	21	92	0	104	36	18	22	22	1.95
29465--29505	13	3.3	13	81	18	52	68	0	0	31	0.90
29469--29558	24	3.6	23	74	22	83	64	3	0	32	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29482--29522	21	2.0	21	85	9	57	63	2	0	34	1.08
29468--29577	53	2.1	53	91	6	179	62	3	0	33	1.12
32056--32105	21	2.4	21	100	0	100	54	8	8	30	1.58
35555--35589	17	2.0	18	88	5	54	42	2	5	48	1.41
35533--35629	47	2.1	47	88	0	140	43	10	5	41	1.61
37286--37310	13	1.9	13	100	0	50	72	0	12	16	1.13
37339--37570	35	6.4	35	77	12	186	43	9	3	43	1.55
42837--42866	13	2.4	13	94	5	53	56	0	0	43	0.99
44374--44409	18	2.0	18	89	10	56	72	0	2	25	0.98
44416--44609	35	5.4	36	77	17	156	41	9	4	43	1.58
44588--44648	25	2.4	25	86	0	86	39	9	3	47	1.53
44626--44741	38	3.3	34	73	16	94	43	8	1	45	1.44
44613--44753	71	2.0	71	83	8	180	43	7	3	45	1.50
46602--46664	17	3.6	18	76	8	58	46	12	6	34	1.68
48250--48290	21	1.9	22	85	5	57	39	17	2	41	1.62

Tables:   1

The End!