Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004587.1 Hibiscus syriacus cultivar Beakdansim tig00010247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83639

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2419--2462
23
2.0
23
81
4
54
50
11
2
36
1.51
3428--3709
49
5.8
49
86
0
357
36
23
16
23
1.94
18698--18725
2
14.0
2
100
0
56
50
0
0
50
1.00
19766--19817
15
3.2
17
72
22
58
36
21
0
42
1.53
22433--22591
60
2.7
60
77
8
173
36
15
12
35
1.86
22455--22591
60
2.3
59
85
6
179
38
16
12
32
1.86
22740--22796
28
2.0
28
86
6
80
38
19
14
28
1.90
25726--25783
23
2.5
23
73
15
57
48
5
3
43
1.42
26409--26466
3
19.3
3
100
0
116
32
0
0
67
0.91
29400--29454
3
19.0
3
83
14
71
36
1
0
61
1.06
29397--29466
22
3.5
20
69
19
56
41
1
0
57
1.08
30840--30880
13
2.9
15
75
14
50
34
7
0
58
1.26
35844--35871
2
14.0
2
100
0
56
50
0
0
50
1.00
38136--38393
83
3.1
83
96
0
462
27
13
21
37
1.91
41106--41160
22
2.5
22
93
0
101
34
10
14
40
1.81
41834--42473
76
8.4
76
95
1
1156
22
21
21
34
1.97
41834--42473
153
4.2
152
97
0
1156
22
21
21
34
1.97
41834--42473
229
2.8
229
97
0
1203
22
21
21
34
1.97
42628--42688
3
21.0
3
80
12
74
39
0
0
60
0.97
44055--44095
13
2.9
15
75
14
50
34
7
0
58
1.26
45586--45621
18
2.1
18
89
5
56
61
0
2
36
1.11
54792--54832
22
1.9
21
90
5
64
46
2
2
48
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54844--54939
2
48.0
2
100
0
192
50
0
0
50
1.00
58999--59037
14
2.8
14
88
0
60
28
12
5
53
1.60
59110--59138
12
2.3
13
94
5
51
27
13
6
51
1.66
59117--59197
28
2.8
28
73
3
81
20
11
7
60
1.54
61161--61319
84
1.8
84
82
8
201
32
18
15
33
1.92
65817--65893
22
3.5
22
96
0
145
33
11
14
40
1.82
66398--66728
165
2.0
166
92
1
558
35
15
12
36
1.85
66731--67763
76
13.6
76
96
0
1834
23
18
21
35
1.96
67696--67799
46
2.3
46
91
1
165
24
19
20
36
1.95
67927--67974
3
15.3
3
78
8
51
41
0
0
58
0.98
67919--67964
22
2.1
22
88
8
67
47
0
0
52
1.00
67929--68009
16
4.8
16
79
11
74
45
0
0
54
0.99
67918--67990
28
2.6
28
80
10
78
47
0
0
52
1.00
67976--68007
2
16.0
2
100
0
64
50
0
0
50
1.00
68905--68941
4
9.0
4
88
5
56
21
2
2
72
1.09
70753--70790
15
2.4
16
82
4
51
76
0
0
23
0.79
71146--71191
17
2.7
17
89
0
65
30
34
8
26
1.86
74228--74266
13
3.1
13
88
3
53
48
2
7
41
1.45

Tables:   1

The End!