genome.fa.s4588.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004588.1 Hibiscus syriacus cultivar Beakdansim tig00010248_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71701

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3344--3387	18	2.4	18	88	3	61	15	38	13	31	1.87
21716--21804	29	3.1	29	96	0	169	14	31	35	17	1.91
21826--21879	18	3.1	18	97	2	101	38	24	20	16	1.92
21861--21950	45	2.0	45	100	0	180	26	15	42	15	1.87
21925--22102	15	11.1	15	74	15	151	20	7	53	17	1.69
21912--22037	65	1.9	65	93	4	218	23	9	50	16	1.75
21917--22051	32	4.2	32	83	11	177	22	8	51	17	1.72
21990--22127	50	2.8	50	92	5	219	18	7	54	18	1.68
22199--22262	32	2.0	32	100	0	128	21	25	21	31	1.98
22572--22620	21	2.3	21	82	3	62	32	0	16	51	1.45
22597--22659	28	2.2	30	88	5	94	33	0	11	55	1.35
23163--23207	21	2.2	21	84	4	56	35	0	8	55	1.31
23464--23522	26	2.3	25	75	18	66	47	8	3	40	1.51
26383--26459	19	3.6	19	72	24	73	35	0	16	48	1.47
26393--26520	11	11.7	11	73	21	51	40	1	12	45	1.51
26445--27191	26	30.5	26	75	16	564	43	2	10	43	1.53
26676--26752	19	3.6	19	72	24	73	35	0	16	48	1.47
26344--27191	293	2.9	293	99	0	1669	43	2	10	43	1.52
26969--27045	19	3.6	19	72	24	73	35	1	16	46	1.56
26542--27100	170	3.3	168	76	13	548	43	2	10	43	1.52
27180--27218	17	2.3	17	100	0	78	38	0	15	46	1.46
27268--27300	17	1.9	17	93	0	57	36	6	12	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29662--29750	45	1.9	47	86	8	130	46	12	0	41	1.41
29681--29819	41	3.3	40	76	14	111	46	11	0	41	1.45
29955--30020	4	16.0	4	78	6	69	1	33	0	65	1.02
29955--30020	33	2.0	33	96	0	123	1	33	0	65	1.02
30082--30133	25	2.1	25	92	0	86	28	32	9	28	1.89
30244--30303	23	2.6	23	100	0	120	23	6	45	25	1.77
30309--30418	29	3.8	29	100	0	220	23	29	30	16	1.96
30443--30511	15	4.9	15	70	20	58	13	31	30	24	1.93
30432--30602	41	4.1	41	75	14	179	16	31	28	23	1.96
30547--30657	55	2.0	55	100	0	222	16	34	21	27	1.95
30473--30741	139	1.9	139	98	0	520	17	31	26	24	1.97
30554--30639	27	3.1	27	62	15	68	16	37	22	24	1.93
30612--30743	41	3.2	41	66	19	119	16	31	28	23	1.96
35953--36019	29	2.3	29	100	0	134	41	19	4	34	1.72
44462--44645	91	2.0	91	100	0	368	34	15	15	34	1.89
45245--45316	31	2.3	31	95	0	126	38	23	16	20	1.92
45460--45492	16	2.1	16	100	0	66	18	18	33	30	1.94
48555--48611	20	2.8	20	69	10	53	45	12	12	29	1.78
49550--49593	22	2.1	21	87	8	63	56	0	6	36	1.26
54082--54108	13	2.1	13	100	0	54	29	29	7	33	1.85
57394--57516	27	4.5	27	75	7	97	27	6	18	47	1.73
60423--60447	13	1.9	13	100	0	50	80	0	4	16	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62612--63505	55	16.6	55	78	8	586	25	26	16	30	1.97
62612--62954	164	2.1	165	86	2	467	27	29	15	27	1.96
62930--63341	54	7.8	51	75	11	271	23	24	18	33	1.97
62930--63341	105	3.9	105	77	8	293	23	24	18	33	1.97
62938--63287	51	6.7	51	77	8	267	23	24	18	33	1.97
62973--63340	156	2.3	156	79	7	388	22	25	18	33	1.97
64510--64566	8	7.5	8	84	13	52	10	7	0	82	0.84
64518--64566	7	6.7	7	84	13	55	12	4	0	83	0.77
64527--64560	10	3.3	10	92	8	59	8	0	0	91	0.43
64527--64560	11	3.2	11	95	4	61	8	0	0	91	0.43

Tables:   1

The End!