Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000459.1 Hibiscus syriacus cultivar Beakdansim tig00000850_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55132

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
488--819
163
2.0
163
95
0
601
31
15
13
38
1.87
1009--1038
2
15.0
2
100
0
60
50
0
0
50
1.00
1821--1923
52
2.0
52
84
0
134
16
31
29
23
1.96
5817--5870
6
9.5
6
78
11
60
16
35
18
29
1.93
5825--5864
21
1.9
21
94
0
71
17
37
17
27
1.92
5831--5859
15
1.9
15
100
0
58
20
37
13
27
1.91
6219--6272
18
3.0
18
88
0
90
22
18
27
31
1.97
7754--7975
111
2.0
111
94
0
390
45
10
7
35
1.68
8099--8140
10
4.2
10
85
11
59
40
0
28
30
1.57
8275--8386
50
2.2
50
82
0
134
24
30
31
14
1.94
11123--11232
38
2.8
38
75
17
91
72
5
6
15
1.23
11141--11360
5
43.2
5
71
15
71
73
3
6
16
1.17
11199--11244
14
3.1
15
82
11
51
80
2
4
13
0.95
11140--11243
41
2.4
46
75
15
105
75
3
5
14
1.12
11179--11256
12
6.6
11
72
15
50
78
1
6
14
1.01
11187--11256
23
2.8
24
83
14
88
78
1
5
14
1.00
11186--11261
39
1.9
38
82
10
91
75
1
9
14
1.11
11272--11308
18
2.0
19
89
5
58
81
8
5
5
0.99
11224--11334
57
2.0
56
81
12
129
75
2
9
12
1.13
11334--11385
22
2.3
23
74
9
54
63
0
1
34
1.06
11316--11382
25
2.6
24
77
17
64
67
0
2
29
1.06
11426--11476
22
2.3
23
79
6
59
60
1
19
17
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13516--13747
85
2.7
85
85
2
306
25
17
20
35
1.95
15265--15466
99
2.0
99
89
0
305
31
17
16
34
1.93
19747--19808
18
3.3
20
71
17
69
27
24
20
27
1.99
19756--19818
18
3.3
20
71
20
64
28
30
15
25
1.96
19748--19817
36
1.9
36
91
0
113
27
27
18
27
1.98
21369--21419
2
25.5
2
100
0
102
50
0
0
49
1.00
21699--21797
30
3.3
30
94
1
164
29
26
23
21
1.99
21699--21822
60
2.1
60
84
3
160
30
26
22
20
1.98
21780--21908
63
2.1
61
87
7
188
32
20
20
27
1.97
21783--21910
31
4.1
31
80
9
152
33
21
18
26
1.96
26446--26517
2
36.0
2
97
0
135
50
1
0
48
1.09
26789--26887
30
3.3
30
94
1
164
29
26
23
21
1.99
26789--26912
60
2.1
60
84
3
160
30
26
22
20
1.98
26870--26998
63
2.1
61
85
7
179
33
20
19
27
1.96
26873--27000
31
4.1
31
79
9
143
34
21
17
26
1.96
29884--29999
13
7.9
14
68
25
55
75
3
3
18
1.09
29883--29919
19
2.0
18
89
5
56
75
0
0
24
0.80
29884--30000
26
4.7
23
73
16
92
75
3
3
17
1.09
29930--29978
17
2.9
17
82
14
66
83
2
2
12
0.82
29942--29974
8
4.0
8
92
7
57
84
0
3
12
0.72
29930--30001
34
2.2
33
82
7
83
80
1
4
13
0.92
29942--30005
17
3.8
17
71
19
53
78
0
6
15
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30042--30087
5
8.8
5
81
9
56
78
0
17
4
0.91
30042--30088
11
4.4
11
91
5
69
78
0
17
4
0.90
30042--30094
22
2.4
22
87
6
72
77
0
16
5
0.96
30135--30205
28
2.5
30
79
11
85
71
4
5
18
1.22
32293--32317
7
3.6
7
100
0
50
56
0
0
44
0.99
33702--33870
60
2.8
60
81
8
177
29
20
7
42
1.80
33977--34113
60
2.3
60
82
6
163
47
5
16
31
1.68
34506--34636
19
6.5
19
74
10
100
20
17
21
40
1.91
34467--34596
60
2.1
61
87
7
183
19
17
21
41
1.90
34525--34636
43
2.7
41
87
5
179
20
16
22
40
1.91
34732--34776
6
7.5
6
94
0
81
31
51
17
0
1.46
35759--35853
41
2.3
41
90
5
147
36
23
18
21
1.95
35759--35833
21
3.6
21
75
10
91
38
22
18
20
1.93
35759--35853
21
4.6
19
72
14
73
36
23
18
21
1.95
36643--36677
17
2.0
18
94
5
63
54
0
0
45
0.99
46444--46795
149
2.4
147
81
10
380
42
17
15
25
1.87
46523--46795
147
1.8
147
84
7
374
41
18
14
25
1.88
49455--49505
22
2.3
22
89
3
75
39
19
19
21
1.93

Tables:   1

The End!