Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004590.1 Hibiscus syriacus cultivar Beakdansim tig00010251_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93519
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:4260 original size:24 final size:24
Alignment explanation
Indices: 4231--4280 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
4221 TGGTGGTTGA
*
4231 TTTAATGGT-TGTTTAAACTTTATT
1 TTTAATGGTATATTT-AACTTTATT
*
4255 TTTAATGGTATATTTAAGTTTATT
1 TTTAATGGTATATTTAACTTTATT
4279 TT
1 TT
4281 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (24 bp):
TTTAATGGTATATTTAACTTTATT
Found at i:6661 original size:15 final size:15
Alignment explanation
Indices: 6641--6675 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
6631 AATTACATGC
6641 CAACATCATTTAGTA
1 CAACATCATTTAGTA
6656 CAACATCATTTAGTA
1 CAACATCATTTAGTA
6671 CAACA
1 CAACA
6676 AAATAGCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29
Consensus pattern (15 bp):
CAACATCATTTAGTA
Found at i:7072 original size:24 final size:23
Alignment explanation
Indices: 7040--7090 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
7030 ACTGCCACAA
* *
7040 AGAATTGCACCGAAGTGTCGCGT
1 AGAATTGCACCGAAGTGCCACGT
*
7063 AGAATATGCATCGAAGTGCCACGT
1 AGAAT-TGCACCGAAGTGCCACGT
7087 AGAA
1 AGAA
7091 ACGTCTCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (23 bp):
AGAATTGCACCGAAGTGCCACGT
Found at i:7135 original size:23 final size:22
Alignment explanation
Indices: 7081--7182 Score: 96
Period size: 23 Copynumber: 4.5 Consensus size: 22
7071 CATCGAAGTG
* *
7081 CCACGTAGAAACGTCTCGAAGGA
1 CCACGTAG-AATGTCCCGAAGGA
* * *
7104 CAACATAGATATGTCTCGAAGGA
1 CCACGTAGA-ATGTCCCGAAGGA
** *
7127 CCGTGTAGAAATATCCCGAAGGA
1 CCACGTAG-AATGTCCCGAAGGA
7150 CCACGTAGAATTGTCCCGAAGGA
1 CCACGTAGAA-TGTCCCGAAGGA
7173 CCACGTAGAA
1 CCACGTAGAA
7183 CCCTCGACTC
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
22 3 0.05
23 60 0.94
24 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.17
Consensus pattern (22 bp):
CCACGTAGAATGTCCCGAAGGA
Found at i:7181 original size:46 final size:46
Alignment explanation
Indices: 7081--7182 Score: 116
Period size: 46 Copynumber: 2.2 Consensus size: 46
7071 CATCGAAGTG
* * *
7081 CCACGTAGAAACGTCTCGAAGGACAACATAGATATGTCTCGAAGGA
1 CCACGTAGAAACATCCCGAAGGACAACATAGATATGTCCCGAAGGA
** * * *
7127 CCGTGTAGAAATATCCCGAAGGACCACGTAGA-ATTGTCCCGAAGGA
1 CCACGTAGAAACATCCCGAAGGACAACATAGATA-TGTCCCGAAGGA
7173 CCACGTAGAA
1 CCACGTAGAA
7183 CCCTCGACTC
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
45 1 0.02
46 44 0.98
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.17
Consensus pattern (46 bp):
CCACGTAGAAACATCCCGAAGGACAACATAGATATGTCCCGAAGGA
Found at i:9555 original size:23 final size:23
Alignment explanation
Indices: 9501--9585 Score: 91
Period size: 23 Copynumber: 3.7 Consensus size: 23
9491 ACATTTGTCA
* **
9501 CGAAGGACCACATAGGTTTGTCC
1 CGAAGGACCACATAGATTTGTTT
* *
9524 CAAATGACCACATAGATTTGTTT
1 CGAAGGACCACATAGATTTGTTT
*
9547 TGAAGGACCACATAGATTT-TTCT
1 CGAAGGACCACATAGATTTGTT-T
*
9570 CGAAGGACTACATAGA
1 CGAAGGACCACATAGA
9586 ACCCTCGACT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
22 2 0.04
23 49 0.96
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (23 bp):
CGAAGGACCACATAGATTTGTTT
Found at i:13064 original size:19 final size:19
Alignment explanation
Indices: 13019--13064 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
13009 TAAGCACATG
*
13019 TTATTTTTATCTTTTAAAT
1 TTATTTTTATCTTTAAAAT
* *
13038 TGATTTTTTTCTCTTAAAAT
1 TTATTTTTATCT-TTAAAAT
13058 TTATTTT
1 TTATTTT
13065 AAAATATATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (19 bp):
TTATTTTTATCTTTAAAAT
Found at i:16546 original size:19 final size:19
Alignment explanation
Indices: 16506--16548 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
16496 TAGTTATGCC
*
16506 AAATTGGTTTTAAAATTCA
1 AAATTGGTTTTAAAATTAA
*
16525 AAATT-GTTTTAAACTGTAA
1 AAATTGGTTTTAAAAT-TAA
16544 AAATT
1 AAATT
16549 AATTTGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (19 bp):
AAATTGGTTTTAAAATTAA
Found at i:28011 original size:2 final size:2
Alignment explanation
Indices: 28004--28028 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
27994 ACTGATTAGT
28004 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
28029 GATTCTCCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:31567 original size:41 final size:42
Alignment explanation
Indices: 31514--31677 Score: 170
Period size: 41 Copynumber: 3.9 Consensus size: 42
31504 TCAATTATAC
* * *
31514 TTTTTATTTTTATAATTGAGTTCTTTAATTTTTTAATTTTAA
1 TTTTTATCTTTATAATTGAGGTCTTTAATTTTTTAATTTCAA
* * * *
31556 TTTTT-TCTTTATAATTGAAGTCTTTAA-TTTGTAATCTCAT
1 TTTTTATCTTTATAATTGAGGTCTTTAATTTTTTAATTTCAA
* * * *
31596 TTTTTATCTTTATAATTGAGGCCTCTAATTTTTTCAATATCAC
1 TTTTTATCTTTATAATTGAGGTCTTTAATTTTTT-AATTTCAA
* ** *
31639 TTTTTACCTTTATAATTGAGGTCCGTAATTTTATAATTT
1 TTTTTATCTTTATAATTGAGGTCTTTAATTTTTTAATTT
31678 TTCTAAGATT
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
40 14 0.14
41 38 0.38
42 13 0.13
43 35 0.35
ACGTcount: A:0.26, C:0.10, G:0.07, T:0.57
Consensus pattern (42 bp):
TTTTTATCTTTATAATTGAGGTCTTTAATTTTTTAATTTCAA
Found at i:38662 original size:91 final size:91
Alignment explanation
Indices: 38498--39211 Score: 993
Period size: 91 Copynumber: 7.9 Consensus size: 91
38488 GAGCCAAAAG
* ** *
38498 GAACAAGTTCTTCTCATTATGAACTTCTCCTCTTTCA-TGGATGAGTTATTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
* ** * *
38562 TTCGTTGGAAATACTGAGCTAAGGTT
66 TCCACTGGAAATGCTGAGCCAAGGTT
38588 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
*
38653 TCCACTGGAAATGTTGAGCCAAGGTT
66 TCCACTGGAAATGCTGAGCCAAGGTT
* * * *
38679 GAACAAGTTCTTCTCATTATGAACTTCTTCCCCCTCGTTGGATGTGTTATTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
* **
38744 TCCACTGGAAAT-CTTGAACCAAGGGA
66 TCCACTGGAAATGC-TGAGCCAAGGTT
* *
38770 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTTGGACGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
* ** * *
38835 TTCGTTGGAAATACTGAGCTAAGGTT
66 TCCACTGGAAATGCTGAGCCAAGGTT
* * * *
38861 GATCAGGTTCTTCTCATTACGAACTTATTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
*
38926 TCAACTGGAAATGCTGAGCCAAGGTT
66 TCCACTGGAAATGCTGAGCCAAGGTT
* *
38952 GAACAAGTTCTTCTCATTATGAACTTATTCTCCTTCATTGGATGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
* *
39017 TCCACTAGAAATGCTGAGCTAAGGTT
66 TCCACTGGAAATGCTGAGCCAAGGTT
* * * * *
39043 GAACAAGTTCATCTCATTATGAACTTGTCCCCCCTCGTTGGATGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
* *
39108 TTCACTGGAAAT-CTTGAACCAAGGTT
66 TCCACTGGAAATGC-TGAGCCAAGGTT
* * *
39134 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCGTTGGACGAGTTCTTCTCATTATGAACTC
1 GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
*
39199 TCCACTGGCAATG
66 TCCACTGGAAATG
39212 TTGATCGGTT
Statistics
Matches: 553, Mismatches: 66, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
90 35 0.06
91 517 0.93
92 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.36
Consensus pattern (91 bp):
GAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGATGAGTTCTTCTCATTATGAACTC
TCCACTGGAAATGCTGAGCCAAGGTT
Found at i:39691 original size:66 final size:67
Alignment explanation
Indices: 39616--39799 Score: 205
Period size: 66 Copynumber: 2.8 Consensus size: 67
39606 CAAAGGTTTT
* * *
39616 GTGTTTCAAGAGGAATTGT-TTATAGGGAGACAAAATTCAG-TTCAAGGGAAACGATCTCAAAGA
1 GTGTTTCAAGAGAAATTGTCTCA-AGGGAGACAAAATTC-GTTTCAAGGGAAACGACCTCAAAGA
39679 -TCA
64 TTCA
* * *
39682 GTGTTTCAAG-GAAAACTGTCTCAAGAGAGACAAAAATCGTTTCAAGGGAAACGACCTCAAAGAT
1 GTGTTTCAAGAG-AAATTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACGACCTCAAAGAT
**
39746 TTT
65 TCA
* * * *
39749 CTGTTTCAAGAGAAATTGTCTCAAGGAAGACAAAATTTGTTTCAAGAGAAA
1 GTGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAA
39800 TATATTCAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
65 2 0.02
66 50 0.51
67 45 0.46
68 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.26
Consensus pattern (67 bp):
GTGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACGACCTCAAAGATT
CA
Found at i:39773 original size:67 final size:66
Alignment explanation
Indices: 39605--39869 Score: 225
Period size: 67 Copynumber: 3.9 Consensus size: 66
39595 GAAAACACAA
* * * *
39605 TCAAAGGTTTTGTGTTTCAAGAGGAATTGT-TTATAGGGAGACAAAATTCAG-TTCAAGGGAAAC
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCA-A-GGAGACAAAATTC-GTTTCAAGGGAAAC
*
39668 GATC
63 GAAC
** *
39672 TCAAAGA-TCAGTGTTTCAAG-GAAAACTGTCTCAAGAGAGACAAAAATCGTTTCAAGGGAAACG
1 TCAAAGATTTTGTGTTTCAAGAG-AAACTGTCTCAAG-GAGACAAAATTCGTTTCAAGGGAAACG
*
39735 ACC
64 AAC
* * * * *
39738 TCAAAGATTTTCTGTTTCAAGAGAAATTGTCTCAAGGAAGACAAAATTTGTTTCAAGAGAAA-TA
1 TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGG-AGACAAAATTCGTTTCAAGGGAAACGA
*
39802 TAT
65 -AC
* * * * *
39805 TCAAAGATTTTTTTTGTTTCAAAAGAAACTGTCTCAAGCGAGATAAAATTTGTTTCAAGTGAAAC
1 TCAAAGA--TTTTGTGTTTCAAGAGAAACTGTCTCAAG-GAGACAAAATTCGTTTCAAGGGAAAC
39870 TGTCTCAAGC
Statistics
Matches: 163, Mismatches: 23, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
65 3 0.02
66 52 0.32
67 58 0.36
68 1 0.01
69 48 0.29
70 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (66 bp):
TCAAAGATTTTGTGTTTCAAGAGAAACTGTCTCAAGGAGACAAAATTCGTTTCAAGGGAAACGAA
C
Found at i:39853 original size:69 final size:66
Alignment explanation
Indices: 39641--39869 Score: 196
Period size: 69 Copynumber: 3.4 Consensus size: 66
39631 TTGTTTATAG
* * * *** *
39641 GGAGACAAAATTCAG-TTCAAGGGAAACGATCTCAAAGA-TCAGTGTTTC-AAGGAAAACTGTCT
1 GGAGACAAAATT-TGTTTCAAGAGAAACGAACTCAAAGATTTTCTGTTTCAAAAG-AAACTGTCT
39703 CAA
64 CAA
* * * * * *
39706 GAGAGACAAAAATCGTTTCAAGGGAAACGACCTCAAAGATTTTCTGTTTCAAGAGAAATTGTCTC
1 G-GAGACAAAATTTGTTTCAAGAGAAACGAACTCAAAGATTTTCTGTTTCAAAAGAAACTGTCTC
39771 AA
65 AA
* * *
39773 GGAAGACAAAATTTGTTTCAAGAGAAA-TATATTCAAAGATTTTTTTTGTTTCAAAAGAAACTGT
1 GG-AGACAAAATTTGTTTCAAGAGAAACGA-ACTCAAAGA--TTTTCTGTTTCAAAAGAAACTGT
39837 CTCAA
62 CTCAA
* *
39842 GCGAGATAAAATTTGTTTCAAGTGAAAC
1 G-GAGACAAAATTTGTTTCAAGAGAAAC
39870 TGTCTCAAGC
Statistics
Matches: 134, Mismatches: 20, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
65 2 0.01
66 34 0.25
67 47 0.35
68 2 0.01
69 48 0.36
70 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.28
Consensus pattern (66 bp):
GGAGACAAAATTTGTTTCAAGAGAAACGAACTCAAAGATTTTCTGTTTCAAAAGAAACTGTCTCA
A
Found at i:39913 original size:36 final size:36
Alignment explanation
Indices: 39750--39905 Score: 151
Period size: 36 Copynumber: 4.4 Consensus size: 36
39740 AAAGATTTTC
* *
39750 TGTTTCAAGAGAAATTGTCTCAAG-GAAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGCG-AGATAAAATT
* * ****
39786 TGTTTCAAGAGAAA-TATATTCAA---AGATTTTTTT
1 TGTTTCAAGAGAAACTGT-CTCAAGCGAGATAAAATT
*
39819 TGTTTCAAAAGAAACTGTCTCAAGCGAGATAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGATAAAATT
* *
39855 TGTTTCAAGTGAAACTGTCTCAAGCGAGATGAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGCGAGATAAAATT
*
39891 TGTTCCAAGAGAAAC
1 TGTTTCAAGAGAAAC
39906 AATCTCAAAG
Statistics
Matches: 96, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
33 22 0.23
34 2 0.02
35 2 0.02
36 70 0.73
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.31
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGCGAGATAAAATT
Found at i:40031 original size:67 final size:66
Alignment explanation
Indices: 39855--40037 Score: 199
Period size: 65 Copynumber: 2.8 Consensus size: 66
39845 AGATAAAATT
* * * * *
39855 TGTTTCAAGTGAAACTGTCTCAAGCGAGATGAAATTTG-TTCCAAGAGAAACAATCTCAAAGGTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAATTTGTTTCAAAG-GAAACAATCGCAAAGGTT
39919 GG
65 GG
* * ** * *
39921 TGCTTCAAGAG-AACTGTCTCAGGAGAGATAAAACATGTTTCAAAGGAAACCATCGCAAAGATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAATTTGTTTCAAAGGAAACAATCGCAAAG-GTT
*
39985 TG
65 GG
* * *
39987 TGTTTCAAGAGAAACTATATCAAGAGAGACAAAATTTGTTTCAAAGGAAAC
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAATTTGTTTCAAAGGAAAC
40038 TGTCTCAAGA
Statistics
Matches: 95, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
65 34 0.36
66 28 0.29
67 33 0.35
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (66 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGATAAAATTTGTTTCAAAGGAAACAATCGCAAAGGTTG
G
Found at i:40075 original size:38 final size:36
Alignment explanation
Indices: 39987--40075 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 36
39977 AAAGATTTTG
39987 TGTTTCAAGAGAAACTATATCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTATATCAAGAGAGACAAAATT
* *
40023 TGTTTCAA-AGGAAACTGTCTCAAGAGAGACAAAACTTT
1 TGTTTCAAGA-GAAACTATATCAAGAGAGACAAAA--TT
*
40061 TTTTTCAAGAGAAAC
1 TGTTTCAAGAGAAAC
40076 AGACTCAGGC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
35 1 0.02
36 30 0.65
38 14 0.30
39 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTATATCAAGAGAGACAAAATT
Found at i:40371 original size:89 final size:90
Alignment explanation
Indices: 40220--40396 Score: 302
Period size: 89 Copynumber: 2.0 Consensus size: 90
40210 TCATGCTTAG
*
40220 TTTCTAAAAACTCATTTGAAAACATCCTGAACTGAAAGTCTTATGGATGGCCCGAAGGACTTACA
1 TTTCTAAAAACTCATTTGAAAACATCCTGAACTGAAAGTCTTATGGATGGCCCGAAGGACTTAAA
40285 AATCAAGAAACC-CCGAAGGCTTTA
66 AATCAAGAAACCTCCGAAGGCTTTA
* * *
40309 TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTAAA
1 TTTCTAAAAACTCATTTGAAAACATCCTGAACTGAAAGTCTTATGGATGGCCCGAAGGACTTAAA
*
40374 AATCAAGAAACCTTCGAAGGCTT
66 AATCAAGAAACCTCCGAAGGCTT
40397 AGTTTCATTT
Statistics
Matches: 82, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 73 0.89
90 9 0.11
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (90 bp):
TTTCTAAAAACTCATTTGAAAACATCCTGAACTGAAAGTCTTATGGATGGCCCGAAGGACTTAAA
AATCAAGAAACCTCCGAAGGCTTTA
Found at i:40513 original size:170 final size:172
Alignment explanation
Indices: 40230--40667 Score: 661
Period size: 170 Copynumber: 2.5 Consensus size: 172
40220 TTTCTAAAAA
* * * *
40230 CTCATTTGAAAACATCCTGAACTGAAAGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAA
1 CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCAAGAAC
40295 CCCCGAAGGCTTTA-TTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGG
66 CCCCGAAGGC-TTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGG
*
40359 CCCGAAGGACTTAAAAATCAAGAAA-CCTTCGAAGGCTTAG-T-T
130 CCCGAAGGAATTAAAAATCAAGAAAGCC--CGAAGGCTTAGTTAT
*
40401 -TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGAATTACAAATCAAGAAC
1 CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCAAGAAC
40465 CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGC
66 CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGC
*
40530 CCGAAGGAATTACAAATCAAGAAAGCCCGAAGGCTTAGTTTCTAAAAT
131 CCGAAGGAATTAAAAATCAAGAAAGCCCGAAGGCTTAG--T-T---AT
*
40578 CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCTAAGGACTTACAAATCAAGAAA
1 CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCAAG-AA
*
40643 CCCCCAAAGGCTTAGTTTCTTAAAA
65 CCCCCGAAGGCTTAGTTTC-TAAAA
40668 AATCTTTTGA
Statistics
Matches: 244, Mismatches: 10, Indels: 17
0.90 0.04 0.06
Matches are distributed among these distances:
169 14 0.06
170 142 0.58
171 2 0.01
173 1 0.00
177 1 0.00
178 59 0.24
179 20 0.08
180 5 0.02
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.25
Consensus pattern (172 bp):
CTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCAAGAAC
CCCCGAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGC
CCGAAGGAATTAAAAATCAAGAAAGCCCGAAGGCTTAGTTAT
Found at i:40552 original size:89 final size:89
Alignment explanation
Indices: 40401--40667 Score: 462
Period size: 89 Copynumber: 3.0 Consensus size: 89
40391 AGGCTTAGTT
40401 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGAATTACAAATCAAGAACC
1 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGAATTACAAATCAAGAACC
40466 CCCGAAGGCTTAGTTTCTAAAATC
66 CCCGAAGGCTTAGTTTCTAAAATC
* **
40490 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGAATTACAAATCAAGAAAG
1 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGAATTACAAATCAAGAACC
40555 CCCGAAGGCTTAGTTTCTAAAATC
66 CCCGAAGGCTTAGTTTCTAAAATC
* *
40579 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCTAAGGACTTACAAATCAAGAAAC
1 TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGAATTACAAATCAAG-AAC
*
40644 CCCCAAAGGCTTAGTTTCTTAAAA
65 CCCCGAAGGCTTAGTTTC-TAAAA
40668 AATCTTTTGA
Statistics
Matches: 168, Mismatches: 8, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
89 145 0.86
90 18 0.11
91 5 0.03
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (89 bp):
TCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCAAAGGAATTACAAATCAAGAACC
CCCGAAGGCTTAGTTTCTAAAATC
Found at i:42625 original size:11 final size:11
Alignment explanation
Indices: 42595--42633 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
42585 TTATTTCTTC
**
42595 TTTTTTTCCAT
1 TTTTTTTCTGT
*
42606 TTTTCTTCTGT
1 TTTTTTTCTGT
42617 TTTTTTTCTGT
1 TTTTTTTCTGT
42628 TTTTTT
1 TTTTTT
42634 GTTTTTCTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.03, C:0.13, G:0.05, T:0.79
Consensus pattern (11 bp):
TTTTTTTCTGT
Found at i:45667 original size:18 final size:18
Alignment explanation
Indices: 45625--45667 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
45615 AAAAACCAGG
*
45625 TGATTTTAATAAAATATT
1 TGATTTTAATAAAATATC
*
45643 TTATTTTAATAAAATA-C
1 TGATTTTAATAAAATATC
45660 TGAGTTTT
1 TGA-TTTT
45668 GGGGTCTGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (18 bp):
TGATTTTAATAAAATATC
Found at i:48550 original size:33 final size:33
Alignment explanation
Indices: 48513--48583 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
48503 TATGATGTTT
48513 GTGAGATTCATAGGTTGAAATGGCTAATAAACA
1 GTGAGATTCATAGGTTGAAATGGCTAATAAACA
48546 GTGAGATTCATAGGTTGAAATGGCTAATAAACA
1 GTGAGATTCATAGGTTGAAATGGCTAATAAACA
48579 GTGAG
1 GTGAG
48584 TTTGAGATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.27
Consensus pattern (33 bp):
GTGAGATTCATAGGTTGAAATGGCTAATAAACA
Found at i:49028 original size:23 final size:23
Alignment explanation
Indices: 48998--49049 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
48988 AAAGGTGTTT
*
48998 GTTGATGCTAGCTGGGTTGGGGA
1 GTTGATGCTAGCTAGGTTGGGGA
49021 GTTGATGCTAGCTAGGTTGGGGA
1 GTTGATGCTAGCTAGGTTGGGGA
49044 GTTGAT
1 GTTGAT
49050 TGTGAGAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.15, C:0.08, G:0.44, T:0.33
Consensus pattern (23 bp):
GTTGATGCTAGCTAGGTTGGGGA
Found at i:52179 original size:131 final size:131
Alignment explanation
Indices: 51990--52356 Score: 466
Period size: 131 Copynumber: 2.8 Consensus size: 131
51980 AATAATTTTA
* * * * *
51990 AGAGAAAGCGATAATATCTAATTATTTCCAATCAAGAATAAATGACCTTTCATGCCTTAAAACAA
1 AGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCAG
* * * * * * * * *
52055 TCATTTATTACCCCAATTGAAATGAAGATATATCACTATTTCGTCTTAAAATTCAATATTGATTT
66 TCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCGTCTCAAAAATCAATATTAACTC
52120 G
131 G
* *
52121 A-ATGAAAACGATAATATCTAATGATTTCCAATCGAGAATAAATGACCTCTCATACCTTAAAGCA
1 AGA-GAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCA
* * *
52185 GCCATTTATGACTCCAATCGAAATGATGAGATATCACTATTCCGTCTCAAAAATCAATATTAACT
65 GTCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCGTCTCAAAAATCAATATTAACT
52250 CG
130 CG
* * * * *
52252 AGAGAAAACGATAATATATGATTATTTCCAATCGAAAATAAATGAACTCTCATGCCTTAAAGTAG
1 AGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCAG
* ** *
52317 TCATTTATTACTCCAACCGAAACAAAGAGATATTACTATT
66 TCATTTATTACTCCAATCGAAATGAAGAGATATCACTATT
52357 TTCATTATCG
Statistics
Matches: 201, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
130 1 0.00
131 199 0.99
132 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.31
Consensus pattern (131 bp):
AGAGAAAACGATAATATCTAATTATTTCCAATCGAGAATAAATGACCTCTCATGCCTTAAAGCAG
TCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTCCGTCTCAAAAATCAATATTAACTC
G
Found at i:55049 original size:3 final size:3
Alignment explanation
Indices: 55041--55076 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
55031 ATACATTTTG
55041 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
55077 GTTTTACTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:56224 original size:14 final size:13
Alignment explanation
Indices: 56191--56230 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
56181 TTGACTTTTT
56191 GGTCAAAGTCAAC
1 GGTCAAAGTCAAC
* *
56204 AGTCAAAGTCAATG
1 GGTCAAAGTCAA-C
56218 GGTCAAAGTCAAC
1 GGTCAAAGTCAAC
56231 AGGTTGACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.40, C:0.20, G:0.23, T:0.17
Consensus pattern (13 bp):
GGTCAAAGTCAAC
Found at i:56271 original size:14 final size:14
Alignment explanation
Indices: 56232--56297 Score: 53
Period size: 14 Copynumber: 4.7 Consensus size: 14
56222 AAAGTCAACA
* *
56232 GGTTGACTCAGATG
1 GGTTAACTCAGACG
*
56246 AGTTAA-TCCAGACG
1 GGTTAACT-CAGACG
*
56260 GGTTAACTCAGATG
1 GGTTAACTCAGACG
** *
56274 ATTTGACTCAGACG
1 GGTTAACTCAGACG
56288 GGTTAACTCA
1 GGTTAACTCA
56298 TATTGAGTTG
Statistics
Matches: 38, Mismatches: 12, Indels: 4
0.70 0.22 0.07
Matches are distributed among these distances:
13 1 0.03
14 36 0.95
15 1 0.03
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (14 bp):
GGTTAACTCAGACG
Found at i:56272 original size:28 final size:28
Alignment explanation
Indices: 56232--56306 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 28
56222 AAAGTCAACA
*
56232 GGTTGACTCAGATGAGTTAA-TCCAGACG
1 GGTTAACTCAGATGAGTTAACT-CAGACG
* *
56260 GGTTAACTCAGATGATTTGACTCAGACG
1 GGTTAACTCAGATGAGTTAACTCAGACG
*
56288 GGTTAACTCATATTGAGTT
1 GGTTAACTCAGA-TGAGTT
56307 GGCTCGGTCG
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
28 34 0.85
29 6 0.15
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (28 bp):
GGTTAACTCAGATGAGTTAACTCAGACG
Found at i:57034 original size:39 final size:40
Alignment explanation
Indices: 56939--57036 Score: 137
Period size: 39 Copynumber: 2.5 Consensus size: 40
56929 GAAATATACT
* *
56939 CAACCTTAAATGTTATATGTTTGATAACATTTTCAGTTTA
1 CAACCTAAAATGTTATATGTTTGATAACATTTTCAGGTTA
* *
56979 TAACCTAAAATGTTATATGTTTTG-TAACA-TTTCCGGTTA
1 CAACCTAAAATGTTATATG-TTTGATAACATTTTCAGGTTA
57018 CAACCTAAAATGTTATATG
1 CAACCTAAAATGTTATATG
57037 GTTAGAAGCA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
39 26 0.50
40 22 0.42
41 4 0.08
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (40 bp):
CAACCTAAAATGTTATATGTTTGATAACATTTTCAGGTTA
Found at i:57049 original size:39 final size:38
Alignment explanation
Indices: 56939--57055 Score: 119
Period size: 39 Copynumber: 3.0 Consensus size: 38
56929 GAAATATACT
* *
56939 CAACCTTAAATGTTATAT-GTTTGATAACATTTTCAGTTTA
1 CAACCTAAAATGTTATATGGTTTG--AACA-TTTCAGGTTA
* * *
56979 TAACCTAAAATGTTATATGTTTTGTAACATTTCCGGTTA
1 CAACCTAAAATGTTATATGGTTTG-AACATTTCAGGTTA
* *
57018 CAACCTAAAATGTTATATGGTTAGAAGCATTTCTGGTT
1 CAACCTAAAATGTTATATGGTTTGAA-CATTTCAGGTT
57056 GCACCAACTT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
38 2 0.03
39 39 0.59
40 21 0.32
41 4 0.06
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.42
Consensus pattern (38 bp):
CAACCTAAAATGTTATATGGTTTGAACATTTCAGGTTA
Found at i:59862 original size:17 final size:17
Alignment explanation
Indices: 59825--59862 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
59815 ATCGCTAACC
*
59825 AAATTTCACTATTCATA
1 AAATTTCACTATTCACA
59842 AAATTT-ACTATTCACA
1 AAATTTCACTATTCACA
59858 TAAAT
1 -AAAT
59863 AGTAACCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTTCACTATTCACA
Found at i:60493 original size:23 final size:24
Alignment explanation
Indices: 60443--60513 Score: 99
Period size: 23 Copynumber: 3.0 Consensus size: 24
60433 ATTATTACTT
* *
60443 CCAATGTCCCTAATTTTGACTTCC
1 CCAAAGTCTCTAATTTTGACTTCC
60467 CCAAAGTCTCTAATTTTGA-TTCC
1 CCAAAGTCTCTAATTTTGACTTCC
* *
60490 CCAAAGCCTCCAATTTTGACTTCC
1 CCAAAGTCTCTAATTTTGACTTCC
60514 AACATTTTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 21 0.50
24 21 0.50
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.35
Consensus pattern (24 bp):
CCAAAGTCTCTAATTTTGACTTCC
Found at i:60824 original size:33 final size:33
Alignment explanation
Indices: 60781--60891 Score: 114
Period size: 33 Copynumber: 3.4 Consensus size: 33
60771 GCAACATGTA
* * * *
60781 TGTGCATGAATTACTTATAAATTTAGCAAGTTG
1 TGTGCATGAATCACTTAAAAAGTTAGAAAGTTG
* *
60814 TGTGCTTGAATCACTTAAAAAGTTAGAAAGTTT
1 TGTGCATGAATCACTTAAAAAGTTAGAAAGTTG
* * * * *
60847 TGTACATAAATCAGTTAAAAAGTTAGCAAGTTA
1 TGTGCATGAATCACTTAAAAAGTTAGAAAGTTG
*
60880 TGTGTATGAATC
1 TGTGCATGAATC
60892 CATCTCACTA
Statistics
Matches: 63, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (33 bp):
TGTGCATGAATCACTTAAAAAGTTAGAAAGTTG
Found at i:67598 original size:2 final size:2
Alignment explanation
Indices: 67593--67621 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
67583 CCCTGTGTGC
67593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67622 TATCACACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:71095 original size:33 final size:33
Alignment explanation
Indices: 71010--71116 Score: 124
Period size: 33 Copynumber: 3.0 Consensus size: 33
71000 GTCGGGTCAG
* *
71010 TTTTTTAAGTGTGATATTCAGGTCGAGTTAGGTCGGCT
1 TTTTTTAAGTGTGATATTCGGGTC--G---GGTCGGGT
71048 TTTTTTAAGTGTGTGATATTCGGGTCGGGTCGGGT
1 TTTTTTAA--GTGTGATATTCGGGTCGGGTCGGGT
*
71083 TTTTTTAAGTGTGATATTTGGGTCGGGTCGGGT
1 TTTTTTAAGTGTGATATTCGGGTCGGGTCGGGT
71116 T
1 T
71117 CGGGTTTAGG
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
33 25 0.39
35 15 0.23
38 9 0.14
40 15 0.23
ACGTcount: A:0.14, C:0.08, G:0.34, T:0.44
Consensus pattern (33 bp):
TTTTTTAAGTGTGATATTCGGGTCGGGTCGGGT
Found at i:72120 original size:30 final size:30
Alignment explanation
Indices: 72084--72148 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
72074 AGACCAGTCT
72084 TAGGCTTATTAAAAAGCCTTATAAGCCTGA
1 TAGGCTTATTAAAAAGCCTTATAAGCCTGA
* *
72114 TAGGCTTATTAAGAAGCCTTATAAGCCTTA
1 TAGGCTTATTAAAAAGCCTTATAAGCCTGA
72144 TAGGC
1 TAGGC
72149 CGACCTATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (30 bp):
TAGGCTTATTAAAAAGCCTTATAAGCCTGA
Found at i:78476 original size:13 final size:15
Alignment explanation
Indices: 78443--78481 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
78433 CTAATGGGCA
78443 AAGTTTTGAAAAACT
1 AAGTTTTGAAAAACT
*
78458 ATG-TTTGAAAAAC-
1 AAGTTTTGAAAAACT
78471 AAGTTTTGAAA
1 AAGTTTTGAAA
78482 TTAATATGCG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 2 0.10
14 17 0.81
15 2 0.10
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.33
Consensus pattern (15 bp):
AAGTTTTGAAAAACT
Found at i:79005 original size:22 final size:24
Alignment explanation
Indices: 78951--79011 Score: 72
Period size: 22 Copynumber: 2.6 Consensus size: 24
78941 GAACCCCCAC
* *
78951 GGGGTATTGATTCCCCTATGAAGG
1 GGGGTATCGATTCCCCTATCAAGG
* *
78975 GGGGAATCGGTTCCCCT-TCAA-G
1 GGGGTATCGATTCCCCTATCAAGG
78997 GGGGTATCGATTCCC
1 GGGGTATCGATTCCC
79012 TTTGCACCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
22 14 0.45
23 3 0.10
24 14 0.45
ACGTcount: A:0.18, C:0.23, G:0.33, T:0.26
Consensus pattern (24 bp):
GGGGTATCGATTCCCCTATCAAGG
Found at i:85423 original size:42 final size:43
Alignment explanation
Indices: 85314--85423 Score: 102
Period size: 43 Copynumber: 2.5 Consensus size: 43
85304 ACCATGCCTT
* * *
85314 CATAATAATTTTCATCCTTAAAAAATATTCAAATCAACATGATTTC
1 CATAATATTTTTCATCCTT---AAACATTCAAAACAACATGATTTC
85360 CATAATATTTTTAGCAT--TTAAACATTCAAAACAACAT-ACTTT-
1 CATAATATTTTT--CATCCTTAAACATTCAAAACAACATGA-TTTC
*
85402 TATAATATTTTTCATCCTTAAA
1 CATAATATTTTTCATCCTTAAA
85424 AAATATTCAA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
40 3 0.05
42 17 0.31
43 19 0.35
46 13 0.24
48 3 0.05
ACGTcount: A:0.42, C:0.16, G:0.02, T:0.40
Consensus pattern (43 bp):
CATAATATTTTTCATCCTTAAACATTCAAAACAACATGATTTC
Done.