Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004591.1 Hibiscus syriacus cultivar Beakdansim tig00010252_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80882

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106--262
68
2.3
69
83
9
207
27
16
17
38
1.91
3298--3378
7
12.8
6
75
22
69
0
17
0
82
0.66
3297--3379
26
3.2
25
86
6
105
0
16
0
83
0.65
3298--3378
25
3.2
24
86
6
99
0
17
0
82
0.66
3298--3359
32
1.9
32
93
0
106
0
16
0
83
0.64
3296--3382
19
4.5
19
84
9
104
0
17
0
82
0.66
6863--6916
27
2.0
28
88
3
83
53
12
16
16
1.73
13158--13207
23
2.2
23
100
0
100
26
4
36
34
1.75
22082--22154
24
3.0
24
83
0
83
31
21
21
24
1.98
23955--24058
38
2.7
39
85
7
140
32
11
26
28
1.91
29609--29684
35
2.2
35
92
0
125
39
23
1
35
1.63
30081--30328
130
1.9
130
90
0
397
36
14
12
35
1.85
30095--30359
130
2.0
129
80
4
291
39
13
13
33
1.83
30794--30827
16
2.0
18
88
11
54
64
5
2
26
1.30
31418--31474
29
2.0
29
82
0
69
61
0
17
21
1.35
33297--33361
3
23.0
3
76
14
50
61
1
3
33
1.21
33286--33361
14
5.6
14
71
13
61
59
1
5
34
1.28
35017--35061
14
3.3
13
87
6
63
4
20
0
75
0.97
35025--35068
14
3.2
14
90
3
72
6
15
0
77
0.97
39261--39307
11
4.4
11
82
10
53
12
12
4
70
1.31
39635--39697
18
3.4
18
77
4
63
73
9
12
4
1.24
43302--43340
7
5.6
7
87
0
51
53
23
0
23
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43290--43341
21
2.5
22
87
9
81
50
25
0
25
1.50
43393--43445
14
3.8
14
71
0
52
50
30
0
18
1.47
45537--45622
23
3.7
23
84
0
109
31
20
20
26
1.98
45537--45633
11
8.5
11
74
6
68
30
19
21
27
1.98
52852--52902
22
2.3
24
74
19
56
37
1
5
54
1.36
53852--53922
19
3.7
19
98
0
133
25
35
21
18
1.95
61292--61413
46
2.7
46
90
1
183
31
20
16
31
1.95
67871--68010
35
4.0
35
73
19
121
37
8
20
33
1.83
68573--68601
15
2.0
15
93
6
51
41
3
27
27
1.72
72570--72635
24
2.8
24
79
6
64
33
21
21
24
1.97
72620--72687
24
2.9
23
82
6
82
27
25
25
22
1.99
72628--72687
24
2.5
24
89
5
86
26
28
25
20
1.99
72827--72912
15
5.7
15
79
5
93
39
19
3
37
1.69
79554--79600
24
2.0
23
83
4
58
36
23
21
19
1.95
79600--79669
25
2.8
25
80
2
79
31
24
25
18
1.98
79788--79851
15
4.3
15
76
11
51
32
21
6
39
1.79
79800--79886
30
2.9
30
77
6
86
36
19
3
40
1.69
79857--79891
15
2.2
16
90
5
54
45
14
0
40
1.45

Tables:   1

The End!