Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004592.1 Hibiscus syriacus cultivar Beakdansim tig00010255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46290

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--77
21
3.2
21
93
4
109
37
22
28
11
1.90
1005--1091
37
2.3
38
83
13
117
39
34
9
17
1.81
3896--3927
15
2.2
15
94
5
57
50
0
0
50
1.00
3911--4010
41
2.4
41
80
9
107
47
2
3
48
1.28
3975--4019
22
2.1
21
88
12
65
55
2
0
42
1.12
13140--13206
23
2.9
23
88
0
98
26
25
25
22
2.00
13222--13439
103
2.1
103
95
1
393
37
23
13
26
1.91
14220--14381
64
2.5
63
76
6
155
25
21
20
31
1.98
14500--14541
17
2.5
17
100
0
84
23
30
0
45
1.53
15494--15561
22
3.0
22
97
2
127
26
27
26
19
1.99
15855--15926
29
2.5
29
93
0
117
38
12
9
38
1.76
16229--16401
67
2.6
67
86
5
215
17
27
27
27
1.98
22435--22501
22
3.0
22
100
0
134
26
26
26
19
1.99
22795--22866
29
2.5
29
93
0
117
38
12
9
38
1.76
23169--23340
67
2.6
67
86
4
222
17
27
27
27
1.98
26598--26711
33
3.5
33
81
2
131
32
37
9
20
1.85
28745--28819
31
2.4
31
79
0
87
26
10
17
45
1.81
30267--30299
16
1.9
17
88
11
50
36
0
3
60
1.12
30262--30301
17
2.3
19
79
16
50
32
0
2
65
1.06
31598--31678
35
2.3
32
77
20
83
25
8
9
55
1.61
35575--35623
20
2.5
20
100
0
98
32
24
4
38
1.74
36390--36433
21
2.2
19
84
8
52
34
4
6
54
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39371--39460
33
2.8
33
84
3
121
35
33
5
25
1.79
43611--43697
33
2.7
33
82
3
115
32
36
4
26
1.77
44466--45045
313
1.9
306
93
4
1013
30
11
20
37
1.88
46019--46063
17
2.6
17
92
3
72
24
6
0
68
1.13

Tables:   1

The End!