Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004594.1 Hibiscus syriacus cultivar Beakdansim tig00010266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49733

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
197--341
62
2.3
62
85
2
182
30
20
22
26
1.98
8746--8903
64
2.5
63
88
3
226
28
19
22
29
1.98
12264--12303
17
2.4
17
100
0
80
35
5
12
47
1.63
13540--13631
46
2.0
46
83
8
116
32
11
23
31
1.91
25789--25862
1
74.0
1
80
0
67
1
4
6
87
0.70
25788--25863
16
5.0
15
82
10
93
1
5
7
85
0.79
25779--25831
17
3.2
17
86
7
65
0
5
7
86
0.69
25789--25863
31
2.5
31
89
4
109
1
4
8
86
0.74
28406--28443
20
1.9
20
94
0
67
28
34
26
10
1.90
32050--32098
22
2.2
23
85
7
73
36
8
16
38
1.78
35062--35169
38
3.2
38
59
33
89
47
6
4
41
1.50
35043--35172
64
2.0
64
100
0
260
46
7
4
40
1.53
35872--35910
19
2.1
18
86
13
53
71
5
5
17
1.23
39507--39582
22
3.5
22
75
0
80
30
26
17
26
1.97
43834--43881
19
2.6
18
90
6
78
14
18
22
43
1.87
48235--48332
40
2.5
39
88
3
144
25
15
22
36
1.93
49167--49429
20
11.6
20
64
24
80
20
24
11
43
1.85
49141--49409
26
11.5
26
63
24
125
20
23
11
43
1.85
49140--49443
46
6.6
46
87
3
414
21
22
11
44
1.84

Tables:   1

The End!