genome.fa.s4595.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004595.1 Hibiscus syriacus cultivar Beakdansim tig00010267_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114620

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93--127	14	2.5	14	90	0	52	31	0	22	45	1.53
233--310	19	4.6	17	81	18	69	46	19	20	14	1.84
244--310	19	3.8	19	84	15	99	47	17	20	13	1.81
328--405	20	3.9	20	96	0	138	15	21	24	38	1.92
1440--1493	24	2.2	24	90	0	81	24	16	20	38	1.92
1665--1689	12	2.1	12	100	0	50	72	0	28	0	0.86
3925--4055	19	7.7	19	62	23	67	44	19	21	15	1.87
3925--4051	33	3.8	33	83	4	175	44	18	21	15	1.87
3930--4058	66	2.0	66	93	0	222	44	17	20	17	1.87
4051--4140	33	2.7	33	92	0	144	12	22	21	44	1.85
4080--4140	19	3.5	19	72	21	69	11	22	21	44	1.84
4066--4122	14	3.7	14	72	20	51	7	24	22	45	1.77
4246--4281	14	2.6	14	86	4	56	47	25	0	27	1.52
5632--5698	21	3.2	21	70	8	64	20	20	34	23	1.97
5969--6153	91	2.0	88	88	8	273	47	18	12	21	1.82
6320--6513	63	3.1	63	97	0	370	24	36	18	20	1.94
7966--8110	19	8.1	19	75	16	139	44	19	24	11	1.83
7991--8055	33	2.0	33	90	0	103	41	21	26	10	1.86
7974--8110	52	2.6	52	91	1	211	43	20	24	11	1.85
8694--8746	20	2.7	20	93	0	88	26	20	28	24	1.99
8755--8808	20	2.7	20	97	0	99	25	18	24	31	1.97
8695--8811	61	1.9	61	85	0	162	23	17	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8690--8829	61	2.3	61	80	6	160	23	18	24	33	1.97
10052--10082	16	1.9	16	93	0	53	38	3	12	45	1.59
12147--12267	5	24.6	5	69	22	71	74	3	4	17	1.13
12175--12291	29	3.9	28	77	16	94	75	3	5	15	1.13
12147--12527	9	41.3	9	69	19	93	70	2	6	20	1.22
12147--12320	14	12.5	13	74	19	88	74	3	6	16	1.16
12265--12318	26	2.1	26	82	6	65	75	3	9	11	1.15
12425--12461	13	2.9	13	81	18	51	64	0	2	32	1.07
12411--12544	27	5.1	26	71	23	86	70	1	2	25	1.10
12401--12527	27	4.9	25	76	15	107	69	1	3	25	1.15
12424--12541	25	4.4	25	70	24	82	69	0	3	26	1.10
13315--13410	21	4.5	21	92	2	147	25	28	19	27	1.99
13936--13996	22	2.8	22	89	0	86	22	22	21	32	1.98
14931--14978	25	1.9	26	83	8	64	27	25	0	47	1.52
16509--17047	124	4.5	115	81	8	424	25	15	24	34	1.95
16596--17047	124	3.6	124	88	0	652	25	15	25	34	1.95
17196--17492	64	4.6	64	93	0	486	28	13	21	36	1.91
24962--25456	55	8.9	55	81	6	511	30	24	16	27	1.97
25456--25533	37	2.1	37	90	0	120	17	20	15	46	1.84
26804--26984	7	23.9	7	70	21	66	7	16	1	74	1.10
26825--26925	11	8.6	11	71	19	62	7	12	0	78	1.01
26804--26984	13	13.0	13	69	23	72	7	16	1	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26851--26950	9	11.2	9	71	25	54	11	14	0	75	1.06
26851--26986	23	5.7	24	72	21	108	9	16	0	72	1.14
26822--26959	54	2.6	52	76	16	140	8	15	1	74	1.12
41076--41114	16	2.5	15	80	8	51	74	7	5	12	1.20
41178--41320	5	29.0	5	69	20	63	77	4	4	12	1.09
41178--41291	14	7.9	13	76	15	84	78	5	3	12	1.03
41151--41278	59	2.2	59	87	4	179	76	5	4	13	1.12
41177--41285	9	12.4	9	75	14	63	77	5	3	12	1.07
41250--41318	26	2.7	25	77	16	70	76	2	7	13	1.10
41353--41536	4	43.8	4	70	20	60	67	2	3	26	1.18
41449--41502	21	2.6	22	77	19	62	64	0	3	31	1.11
42772--42808	2	18.5	2	100	0	74	48	0	0	51	1.00
46803--46837	18	2.1	17	89	10	54	65	0	0	34	0.93
51946--52017	3	24.0	3	83	5	83	59	1	0	38	1.06
52173--52783	76	8.0	76	97	0	1107	35	21	21	21	1.96
53820--53926	54	2.0	54	88	0	160	24	23	14	38	1.91
55970--56188	115	1.9	115	87	1	323	31	21	14	32	1.93
56073--56358	93	3.0	93	83	7	353	37	20	12	29	1.89
58520--58568	11	4.4	11	80	14	64	0	12	0	87	0.54
58514--58579	17	3.9	17	84	13	91	0	16	0	83	0.65
58514--58575	18	3.5	18	91	6	92	0	16	0	83	0.64
58520--58575	29	1.9	29	89	7	87	0	14	0	85	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65410--65479	3	23.0	3	85	2	86	60	1	0	38	1.06
65401--65479	18	4.2	18	78	15	81	58	1	0	40	1.06
71075--71248	93	1.9	93	95	0	312	37	11	20	30	1.88
75017--75092	30	2.6	30	89	6	111	18	17	6	57	1.60
84015--84056	21	2.0	21	100	0	84	42	23	4	28	1.74
88038--88063	11	2.4	11	100	0	52	34	0	0	65	0.93
89152--89216	23	3.0	23	80	11	82	32	29	7	30	1.85
89513--89565	18	3.0	16	76	17	52	24	11	3	60	1.47
92635--92690	3	18.7	3	100	0	112	67	0	0	32	0.91
92704--92829	62	2.0	62	98	0	243	38	24	8	27	1.85
93769--93820	21	2.7	18	82	8	59	34	19	11	34	1.88
99588--99629	22	1.9	22	85	9	59	28	19	11	40	1.87
99658--100059	63	6.4	63	94	1	707	26	19	13	40	1.88
100445--100499	22	2.6	21	78	13	60	27	25	14	32	1.95
105032--105109	19	3.9	19	72	18	77	30	12	28	28	1.93
105045--105134	42	2.1	42	100	0	180	32	17	22	27	1.97
105035--105120	19	4.3	19	71	18	68	32	12	27	26	1.93
106105--106149	23	2.0	23	81	0	54	48	20	8	22	1.76
106214--106277	30	2.1	30	82	0	74	57	20	4	17	1.57
106742--106789	21	2.2	21	92	3	78	29	14	4	52	1.60
107071--107144	2	37.0	2	100	0	148	50	0	0	50	1.00
107440--107530	45	2.0	46	89	2	139	28	25	18	27	1.98

Tables:   1

The End!