genome.fa.s4596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004596.1 Hibiscus syriacus cultivar Beakdansim tig00010269_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55338

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325--427	52	2.0	51	90	5	163	35	16	10	36	1.83
4620--4644	13	1.9	13	100	0	50	56	16	4	24	1.57
4795--4866	27	2.6	27	93	2	117	33	23	19	23	1.97
16884--16922	12	3.2	12	82	17	53	82	0	10	7	0.86
16864--16919	18	3.1	18	80	14	62	80	1	14	3	0.93
16871--16914	6	7.5	6	82	12	56	81	2	13	2	0.88
16876--16922	24	1.9	25	91	4	78	80	2	10	6	0.96
17601--17645	21	2.1	21	84	8	56	75	4	15	4	1.12
17746--17770	13	1.9	13	100	0	50	52	16	24	8	1.70
19441--19497	22	2.6	22	75	10	62	31	21	22	24	1.98
23176--23202	2	13.5	2	100	0	54	48	0	0	51	1.00
23250--23901	81	8.0	81	87	1	896	28	21	12	38	1.89
23849--24239	68	5.8	68	87	1	525	29	25	13	31	1.94
25862--26346	81	6.0	80	83	2	477	28	20	11	39	1.88
26335--26686	68	5.2	68	87	1	465	30	24	14	30	1.95
28309--28793	81	6.0	81	84	0	558	28	21	12	38	1.89
28743--29133	68	5.8	68	84	2	428	31	23	13	31	1.93
30753--31236	81	6.0	81	84	0	522	27	21	12	38	1.89
31186--31368	68	2.7	67	83	1	195	33	22	12	31	1.91
31352--31383	15	2.1	15	100	0	64	34	12	12	40	1.81
31225--31519	151	2.0	151	87	4	434	30	23	14	31	1.94
31291--31451	83	1.9	83	86	5	227	31	21	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31186--31582	219	1.8	218	85	2	555	30	23	13	31	1.93
31371--31591	68	3.3	68	90	0	336	28	24	15	31	1.95
31797--31943	54	2.7	54	78	9	165	32	19	11	36	1.87
33187--33761	81	7.1	81	88	0	821	27	22	12	37	1.90
33709--34085	68	5.6	68	83	2	454	30	23	14	32	1.94
35678--36210	81	6.6	81	81	0	564	29	21	11	37	1.89
36153--36537	68	5.7	68	82	0	430	30	23	13	32	1.93
36757--36900	55	2.6	55	85	1	173	31	22	11	34	1.90
38122--38149	5	5.6	5	100	0	56	39	21	0	39	1.54
38278--38663	81	4.8	80	87	1	504	27	22	12	37	1.90
38800--39216	54	7.7	54	83	4	475	28	17	17	35	1.94
39536--39584	19	2.4	22	86	10	68	30	26	14	28	1.95
44616--45019	80	5.0	81	87	4	536	27	20	11	39	1.88
44965--45290	68	4.8	68	87	0	454	27	24	14	32	1.95
45508--45643	55	2.5	55	84	3	177	33	20	10	36	1.87
45989--46210	94	2.3	95	86	5	290	25	24	15	34	1.95
46197--46252	21	2.7	21	75	2	60	32	23	14	30	1.94

Tables:   1

The End!