Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000460.1 Hibiscus syriacus cultivar Beakdansim tig00000851_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79452

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--147
54
2.7
54
91
4
220
29
25
16
27
1.97
11127--11164
16
2.3
16
95
4
67
36
28
7
26
1.84
16626--16669
22
2.0
22
100
0
88
40
13
13
31
1.84
18250--19050
134
6.0
134
83
5
953
32
21
15
30
1.95
18250--19049
268
3.0
264
86
3
1068
32
21
15
30
1.95
21009--21033
2
12.5
2
100
0
50
52
0
0
48
1.00
21406--21488
3
28.3
3
90
4
107
26
1
4
67
1.18
26299--26648
131
2.7
131
84
0
468
34
11
15
38
1.83
27491--27777
131
2.2
131
84
3
373
33
10
15
40
1.82
28719--29090
185
2.0
185
92
2
613
41
4
9
44
1.55
30809--30927
60
2.0
60
80
6
134
38
12
14
34
1.84
31329--31386
2
29.0
2
100
0
116
50
0
0
50
1.00
31989--32375
93
4.2
92
86
4
499
28
16
31
22
1.96
36064--36191
62
2.0
63
98
1
249
43
4
10
40
1.61
37146--37221
35
2.2
35
92
0
125
39
23
1
35
1.63
37616--37863
130
1.9
130
92
1
417
35
15
12
35
1.86
37630--37894
130
2.0
129
81
5
302
39
13
12
33
1.83
38194--38256
28
2.3
27
78
8
63
46
1
3
49
1.27
38336--38369
16
2.0
18
88
11
54
64
5
2
26
1.30
43517--43575
31
1.9
31
96
0
109
25
18
8
47
1.77
47225--47251
2
13.5
2
100
0
54
51
0
0
48
1.00
49628--49660
5
6.6
5
100
0
66
18
21
18
42
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49750--49785
17
2.1
17
89
0
54
58
0
0
41
0.98
51352--51381
16
1.9
16
93
6
53
30
3
0
66
1.07
55671--55699
2
14.5
2
100
0
58
48
0
0
51
1.00
56843--56938
48
2.0
47
88
4
140
55
7
3
34
1.43
57651--57708
30
1.9
30
85
0
80
31
10
18
39
1.85
58716--58800
31
2.7
31
85
5
109
48
8
1
42
1.40
61244--61294
19
2.6
19
81
3
57
35
33
13
17
1.89
61396--61457
21
3.0
21
76
2
72
22
24
20
32
1.98
61621--61645
6
4.2
6
100
0
50
0
16
48
36
1.46
61713--61986
41
6.7
41
86
2
388
36
19
22
21
1.95
61713--61974
21
12.8
20
71
6
112
37
19
22
21
1.95
68073--68183
30
3.7
30
78
2
116
32
7
23
36
1.82
71541--71566
2
13.0
2
100
0
52
50
0
0
50
1.00
72056--72102
11
4.3
11
94
0
76
31
6
10
51
1.62
74018--74055
18
2.2
18
85
4
51
13
18
21
47
1.82
73948--74137
106
1.8
105
89
3
301
26
14
18
40
1.90

Tables:   1

The End!