genome.fa.s4600.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004600.1 Hibiscus syriacus cultivar Beakdansim tig00010276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75519

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--307	110	2.8	111	87	5	426	32	16	22	28	1.96
2757--2816	14	4.4	14	81	8	70	0	20	0	80	0.72
2764--2818	22	2.6	23	83	13	73	0	18	0	81	0.68
8031--8098	3	22.3	3	79	8	75	61	0	2	35	1.11
8500--8538	15	2.6	15	87	0	60	58	2	15	23	1.49
15141--15171	3	10.0	3	93	6	53	35	0	0	64	0.94
20287--20331	22	2.0	23	86	4	65	75	6	11	6	1.18
20287--20340	20	2.6	21	85	5	65	74	7	12	5	1.21
21494--21571	37	2.1	36	83	4	93	25	17	16	39	1.91
21515--21641	37	3.4	37	76	12	116	30	18	12	37	1.88
21773--22046	65	4.2	64	87	3	379	24	20	14	40	1.90
21858--22045	36	5.6	36	65	26	117	23	19	16	39	1.91
21772--22046	130	2.1	130	92	0	451	24	20	15	40	1.91
21902--22008	29	3.4	29	67	20	81	23	20	15	40	1.91
22048--22390	131	2.6	131	83	3	420	27	29	17	25	1.97
22048--22442	131	3.0	131	80	4	418	27	29	17	25	1.97
22647--22678	3	10.3	3	93	6	55	37	0	0	62	0.95
22650--22682	10	3.4	10	95	4	59	39	0	0	60	0.97
22885--22938	28	1.9	28	100	0	108	12	38	22	25	1.90
27313--27359	21	2.2	21	100	0	94	27	34	19	19	1.96
27355--27406	20	2.6	20	100	0	104	23	21	17	38	1.93
27400--27621	42	5.3	42	91	1	349	22	19	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27374--27621	84	3.0	84	86	4	353	22	19	20	37	1.94
27748--27999	21	12.2	20	76	15	230	33	23	21	21	1.97
27776--28007	63	3.8	61	83	8	276	34	24	21	20	1.97
27748--27999	42	6.1	40	86	6	262	33	23	21	21	1.97
27818--27999	81	2.2	82	94	2	312	32	24	21	20	1.98
27839--28007	42	4.1	42	88	6	267	34	23	21	20	1.97
28003--28055	21	2.5	21	87	6	72	20	20	28	30	1.98
34548--34579	2	16.0	2	100	0	64	50	0	0	50	1.00
35303--35348	24	1.9	24	81	0	56	28	17	4	50	1.65
36671--36722	21	2.5	21	81	3	61	38	19	25	17	1.93
37346--37429	19	4.4	19	89	3	123	9	16	22	51	1.73
37341--37429	39	2.3	38	86	3	126	10	17	22	49	1.77
37453--37479	14	1.9	14	100	0	54	7	29	22	40	1.81
37402--37496	33	2.8	33	82	1	109	12	22	23	42	1.87
37464--37502	20	2.0	20	94	0	69	12	23	15	48	1.79
39213--39248	14	2.6	14	95	0	63	30	0	25	44	1.54
39430--39556	33	3.9	32	85	8	184	14	22	19	43	1.88
39423--39555	66	2.0	66	95	0	239	16	21	19	42	1.89
42049--42092	22	2.0	23	86	4	63	31	22	20	25	1.98
43151--43228	20	3.9	20	96	0	138	38	24	21	15	1.92
43252--43305	14	3.5	14	77	22	63	11	20	20	48	1.80
43234--43304	33	2.2	33	84	0	88	19	19	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43247--43324	33	2.4	33	91	0	120	12	23	21	42	1.87
43412--43448	14	2.6	14	86	0	56	48	21	0	29	1.50
45310--45376	19	3.5	19	83	4	89	37	23	23	14	1.93
45405--45498	32	2.9	33	88	3	145	14	19	20	45	1.85
45482--45536	20	2.8	19	83	8	65	16	23	23	36	1.94
46018--46062	18	2.5	18	88	0	72	13	15	44	26	1.83
47378--47420	20	2.2	20	86	0	59	48	20	18	11	1.79
47699--47742	22	2.0	22	95	0	79	18	15	45	20	1.85
47930--48002	20	3.7	20	92	0	119	26	19	28	26	1.98
48013--48105	20	4.6	20	75	4	87	17	23	18	40	1.90
48013--48105	41	2.3	41	96	0	177	17	23	18	40	1.90
51754--52283	55	9.6	54	76	9	414	26	22	17	32	1.97
51755--52283	110	4.8	112	83	6	573	26	22	17	32	1.97
51818--52274	221	2.1	219	84	5	582	26	21	18	33	1.97
52283--52408	37	3.4	37	83	6	157	22	18	16	42	1.88
53645--53677	17	1.9	18	88	11	52	6	9	0	84	0.76
58636--58734	22	4.5	22	90	0	162	29	30	25	15	1.95
67068--67148	24	3.6	23	73	17	80	22	23	23	30	1.99
67646--67684	13	3.1	13	92	3	62	38	7	2	51	1.44
68696--68747	21	2.5	21	81	3	52	5	46	15	32	1.70

Tables:   1

The End!