genome.fa.s4601.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004601.1 Hibiscus syriacus cultivar Beakdansim tig00010281_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96793

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1668--1702	18	1.9	18	94	0	61	11	14	20	54	1.70
1708--1764	26	2.2	26	80	0	69	38	15	10	35	1.82
2186--2439	6	41.8	6	67	16	78	4	37	0	57	1.23
2192--2334	21	6.2	21	67	17	54	2	39	0	56	1.19
2246--2466	18	12.1	17	70	16	81	5	37	0	57	1.26
2185--2451	42	6.5	41	71	13	149	4	37	0	56	1.24
2259--2406	24	6.2	25	74	13	98	4	38	0	56	1.26
2187--2467	33	8.3	33	69	17	121	4	37	0	57	1.24
2427--2481	24	2.3	24	83	0	74	5	38	0	56	1.23
2243--2467	15	14.6	15	67	15	86	5	36	0	57	1.25
4479--4805	21	15.7	19	80	11	222	22	19	21	36	1.95
4479--4806	63	5.2	61	79	10	326	22	19	21	36	1.95
4540--4798	84	3.1	81	90	5	376	21	19	22	36	1.95
5504--5615	21	5.4	21	68	17	83	37	22	18	21	1.94
5525--5661	21	6.6	21	73	9	129	34	25	19	20	1.96
5500--5636	42	3.3	42	93	2	242	35	24	18	21	1.95
5500--5655	82	1.9	83	88	7	237	35	24	19	21	1.96
5718--5793	21	3.6	21	89	0	116	31	26	21	21	1.98
5595--5820	111	2.0	110	84	6	296	32	21	22	23	1.98
5808--5854	21	2.2	21	100	0	94	19	19	34	27	1.96
15549--15588	21	1.9	21	85	10	55	35	7	2	55	1.42
18763--18812	20	2.5	20	93	6	84	18	28	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20061--20105	22	2.2	20	84	8	54	51	0	0	48	1.00
24815--24859	22	2.1	21	83	4	54	24	11	24	40	1.87
25495--25576	2	42.0	2	79	13	82	46	3	3	46	1.38
25738--25769	2	16.0	2	100	0	64	50	0	0	50	1.00
29964--30009	2	23.0	2	100	0	92	50	0	0	50	1.00
35260--35317	27	2.1	28	87	3	82	0	6	12	81	0.88
35274--35312	20	1.9	21	89	5	62	0	7	10	82	0.86
35260--35317	28	2.1	28	87	6	82	0	6	12	81	0.88
41020--41236	51	4.2	52	82	4	224	47	15	11	25	1.79
41020--41215	103	1.9	102	82	1	248	47	14	11	26	1.78
44009--44048	21	1.9	21	89	0	62	30	7	5	57	1.48
44662--44706	23	2.0	23	86	0	63	26	28	24	20	1.99
44685--44988	149	2.0	149	98	0	590	35	20	16	27	1.94
45444--45588	67	2.2	67	94	2	256	15	26	26	31	1.96
51673--51717	23	2.0	23	86	0	63	26	28	24	20	1.99
51696--51999	149	2.0	149	99	0	599	35	20	16	27	1.94
52449--52599	67	2.3	67	94	2	259	15	25	28	29	1.96
55311--55454	65	2.2	65	80	4	157	34	16	19	29	1.94
65620--65646	13	2.1	13	100	0	54	14	14	55	14	1.70
66074--66108	16	2.1	17	89	5	54	34	0	22	42	1.54
71941--72012	31	2.4	31	81	6	85	31	11	4	52	1.56
80779--80814	16	2.2	17	90	5	56	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80892--80930	2	19.5	2	94	0	69	48	0	0	51	1.00
81456--81483	14	2.0	14	100	0	56	21	42	28	7	1.79
81472--81523	20	2.6	20	96	0	95	26	30	28	13	1.94
81451--81590	10	13.0	10	66	14	64	25	30	33	10	1.90
81501--81594	33	2.8	33	90	0	134	25	27	37	9	1.87
81627--81701	33	2.3	33	90	0	114	9	38	24	28	1.86
81627--81711	33	2.6	33	86	0	107	9	37	25	27	1.87
81693--81725	14	2.4	14	94	0	57	6	30	39	24	1.79
81673--81761	44	2.0	46	88	6	137	10	30	33	25	1.89
85341--85437	29	3.3	28	76	12	97	42	6	7	44	1.57
89371--89401	16	1.9	16	100	0	62	22	38	0	38	1.54
91638--91721	19	4.2	19	77	10	60	20	27	29	22	1.98
95675--95728	15	3.6	15	100	0	108	18	33	12	35	1.89

Tables:   1

The End!