genome.fa.s4602.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004602.1 Hibiscus syriacus cultivar Beakdansim tig00010286_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135704

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1564--1660	49	2.0	48	93	2	167	41	19	5	34	1.74
2255--2306	27	1.9	27	100	0	104	32	26	15	25	1.95
3273--3309	19	1.9	19	88	0	56	35	24	0	40	1.55
9237--9270	18	1.9	18	88	5	52	61	2	5	29	1.34
14076--14123	22	2.2	22	82	14	55	33	4	6	56	1.44
14073--14134	30	2.1	29	87	3	88	35	4	6	53	1.48
14203--14248	2	23.0	2	100	0	92	50	0	0	50	1.00
14229--15178	496	1.9	498	97	0	1807	39	7	9	43	1.67
15351--15415	20	3.2	20	86	0	94	40	18	18	23	1.92
15409--15451	20	2.2	20	100	0	86	41	25	11	20	1.86
15344--15437	40	2.3	40	78	10	102	41	20	14	23	1.89
15964--16006	20	2.2	20	95	0	77	48	16	18	16	1.81
15972--16014	20	2.2	20	95	0	77	48	18	20	11	1.79
16011--16073	20	3.2	20	84	2	83	12	14	22	50	1.76
17998--18043	4	11.5	4	80	0	56	26	2	4	67	1.21
18181--18257	21	3.6	22	84	8	106	20	35	19	24	1.96
19129--19171	21	2.0	21	100	0	86	53	4	13	27	1.60
19765--19803	20	2.0	20	94	0	69	43	20	17	17	1.88
19817--19860	20	2.2	20	91	0	70	31	18	22	27	1.97
19793--19889	49	2.0	49	87	4	142	30	18	22	27	1.97
22393--22446	24	2.2	24	90	0	81	42	20	16	20	1.89
22572--22605	12	2.8	12	90	0	50	14	0	29	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23370--23447	40	2.0	40	82	5	95	37	12	20	29	1.90
23465--23524	20	3.0	20	95	2	102	41	15	23	20	1.89
24313--24348	15	2.4	15	90	0	54	55	0	2	41	1.14
24641--24673	9	3.7	9	95	0	57	45	0	0	54	0.99
26083--26133	23	2.2	23	85	0	66	37	1	1	58	1.20
35983--36077	21	4.6	21	82	5	122	18	21	26	33	1.96
36029--36098	19	3.5	19	70	12	59	22	18	20	38	1.93
36008--36105	40	2.4	40	89	3	142	23	19	22	34	1.96
35987--36106	61	2.0	60	80	9	136	23	20	23	33	1.97
37225--37369	21	6.9	21	90	3	229	33	22	22	21	1.98
37341--37443	40	2.5	40	88	6	143	34	22	20	22	1.96
37225--37413	63	3.0	63	84	6	206	33	21	22	22	1.97
37376--37449	21	3.6	21	76	7	80	33	24	21	20	1.97
42865--42926	22	2.8	22	85	0	79	40	12	25	20	1.89
48100--48171	36	2.0	36	97	0	135	33	2	34	29	1.72
48622--48667	18	2.6	18	100	0	92	34	6	26	32	1.82
59934--59966	12	2.6	13	90	4	50	12	3	3	81	0.91
64818--64925	47	2.3	47	95	0	189	18	20	23	37	1.94
64907--64992	32	2.7	32	90	0	136	9	23	30	37	1.86
69785--69810	13	2.0	13	100	0	52	53	23	0	23	1.46
69883--69938	30	2.0	28	83	16	71	10	33	8	46	1.70
70046--70126	33	2.6	32	82	7	103	39	24	22	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70167--70205	20	2.0	20	94	0	69	17	43	12	25	1.85
78598--78640	23	1.9	22	90	4	68	23	0	4	72	1.04
79217--79401	4	46.2	4	100	0	370	75	0	0	24	0.81
80790--80826	2	20.0	2	84	15	53	51	0	0	48	1.00
81272--81304	16	2.1	16	100	0	66	48	6	12	33	1.65
87412--87445	14	2.4	14	85	5	50	61	5	11	20	1.50
88906--88965	18	3.1	18	70	22	50	33	1	0	65	1.03
89368--89396	14	2.1	14	100	0	58	72	0	0	27	0.85
90873--90912	3	13.3	3	94	0	71	67	2	0	30	1.04
96999--97033	11	3.1	11	91	4	52	22	0	0	77	0.78
106621--106897	21	12.6	21	67	15	105	23	22	21	31	1.98
106581--106987	111	3.7	111	96	0	715	25	22	20	31	1.98
106843--107052	42	4.9	42	71	13	144	23	20	20	34	1.97
106960--107056	21	4.8	19	74	12	86	22	19	22	35	1.96
106960--107055	40	2.3	42	91	3	160	21	19	22	35	1.96
111018--111055	20	1.9	20	100	0	76	36	10	28	23	1.88
111145--111202	20	2.9	20	100	0	116	36	10	29	24	1.88
111352--111425	37	2.0	36	82	7	87	52	2	0	44	1.15
111995--112047	27	2.0	27	92	0	88	28	16	18	35	1.93
114434--114556	31	4.0	29	78	13	122	40	4	8	46	1.54
114446--114564	61	2.0	61	83	9	154	42	4	8	45	1.54
119577--119614	15	2.5	16	83	12	53	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119575--119613	13	2.8	13	81	11	51	66	0	0	33	0.92
129953--129986	17	1.9	18	88	5	52	50	2	0	47	1.16

Tables:   1

The End!