Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004603.1 Hibiscus syriacus cultivar Beakdansim tig00010287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62870

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1981--2028
18
2.7
18
83
0
60
43
2
10
43
1.50
3177--3206
14
2.1
14
93
0
51
40
6
10
43
1.64
19796--19878
29
2.8
29
92
1
139
43
9
14
32
1.78
23239--23268
15
2.0
15
93
0
51
20
0
23
56
1.42
25753--25782
15
2.0
15
93
0
51
56
23
0
20
1.42
32984--33041
25
2.3
25
82
8
73
58
5
0
36
1.20
34550--34590
18
2.2
18
86
4
55
46
7
2
43
1.44
34663--34714
27
1.9
27
100
0
104
42
7
11
38
1.70
40756--40808
21
2.5
21
90
0
79
30
30
22
16
1.96
40820--40927
21
5.0
21
80
8
103
23
20
22
34
1.97
40804--40914
21
5.3
23
79
10
98
21
18
21
38
1.93
40804--40927
44
3.0
43
74
15
125
23
19
20
36
1.95
41485--41565
19
4.3
19
67
14
51
41
4
1
51
1.31
43317--43359
2
21.5
2
100
0
86
48
0
0
51
1.00
46141--46258
60
2.0
60
84
3
157
33
14
2
49
1.57
47658--47707
21
2.4
21
96
3
93
36
20
28
16
1.93
48652--48771
35
3.3
36
89
5
181
44
19
5
31
1.72
48703--48763
21
3.2
21
65
29
64
42
21
4
31
1.74
48654--48798
35
4.1
36
83
11
142
42
18
6
33
1.75
53226--53332
35
2.9
36
88
5
153
45
17
3
32
1.66
53232--53360
35
3.6
36
82
9
124
43
17
5
34
1.72
54763--54793
2
15.5
2
93
0
53
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55760--55791
2
16.0
2
100
0
64
0
50
0
50
1.00

Tables:   1

The End!