Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004604.1 Hibiscus syriacus cultivar Beakdansim tig00010290_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54341

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5096--5132
2
18.5
2
94
0
65
54
0
0
45
1.00
6352--6532
76
2.4
75
78
8
197
30
1
11
55
1.45
7159--7202
18
2.4
19
88
3
63
20
6
0
72
1.07
7225--7255
16
2.0
15
93
6
53
35
6
0
58
1.24
12572--12632
5
11.8
5
82
6
77
14
1
3
80
0.92
12572--12632
31
2.0
31
90
6
97
14
1
3
80
0.92
13307--13493
74
2.6
74
82
8
224
28
0
15
55
1.45
14083--14126
18
2.4
19
88
3
63
20
6
0
72
1.07
14175--14201
8
3.4
8
100
0
54
22
0
0
77
0.76
14154--14231
23
3.3
24
77
10
63
23
5
0
71
1.05
15432--15463
11
2.9
11
100
0
64
37
0
18
43
1.51
18997--19027
2
15.5
2
100
0
62
51
0
0
48
1.00
26246--26299
2
27.0
2
100
0
108
50
0
0
50
1.00
34146--34170
2
12.5
2
100
0
50
48
0
0
52
1.00
35052--35104
21
2.5
21
93
0
88
22
24
16
35
1.95
35094--35146
20
2.7
20
96
0
97
37
18
20
22
1.94
35344--35408
22
3.0
21
77
8
67
27
38
9
24
1.86
35776--35845
20
3.5
20
80
0
59
20
17
21
41
1.90
35793--35847
20
2.8
20
80
0
65
16
16
18
49
1.81
37722--37811
20
4.5
20
90
0
135
41
23
16
18
1.90
37736--37832
40
2.6
38
87
9
121
43
21
19
15
1.88
37858--37924
20
3.3
20
91
0
98
22
17
22
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38408--38511
21
5.0
21
71
3
75
22
36
16
25
1.94
38408--38515
42
2.6
41
78
8
119
22
37
15
24
1.93
39898--39933
14
2.6
14
90
0
54
30
0
22
47
1.52
40050--40134
33
2.5
34
88
1
118
45
18
22
12
1.83
40145--40211
20
3.7
19
73
20
72
13
22
19
44
1.85
40149--40233
33
2.5
33
92
1
134
14
23
18
43
1.87
40216--40300
20
4.2
20
84
3
118
18
21
24
35
1.96
40216--40294
40
2.0
41
92
2
133
20
21
22
35
1.96
41945--41991
24
2.0
24
95
0
85
34
17
21
27
1.95
41949--42000
24
2.2
24
85
0
68
36
19
19
25
1.95
42828--42874
20
2.3
20
92
0
76
21
19
27
31
1.97
42861--42974
20
5.7
20
83
2
147
20
19
21
39
1.93
42861--42974
41
2.8
40
86
1
156
20
19
21
39
1.93
42971--43016
21
2.2
21
92
0
74
41
15
26
17
1.88
45095--45141
12
3.8
12
88
11
69
38
2
0
59
1.09
46423--46457
18
2.1
17
89
10
54
22
42
0
34
1.54
48250--48332
21
3.8
21
80
13
87
20
24
31
24
1.98
48250--48331
23
3.7
22
81
9
87
20
24
31
23
1.98

Tables:   1

The End!