genome.fa.s4605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004605.1 Hibiscus syriacus cultivar Beakdansim tig00010294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86285

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374--413	20	1.9	22	90	10	66	37	40	10	12	1.77
3322--3378	19	3.0	18	80	12	69	28	14	10	47	1.76
3488--3546	30	2.0	30	93	6	102	38	3	13	44	1.61
3813--3852	20	1.9	22	90	10	66	37	37	10	15	1.80
4293--4350	23	2.5	23	97	0	107	24	41	10	24	1.86
5488--5540	25	2.1	25	100	0	106	49	13	3	33	1.60
7305--7354	24	2.1	24	82	17	61	54	2	0	44	1.11
7958--8062	2	53.5	2	77	14	85	45	5	0	48	1.26
8115--8212	37	2.8	37	79	11	100	40	3	8	47	1.49
8086--8196	51	2.1	56	83	11	144	38	2	9	49	1.49
8128--8212	37	2.2	38	82	14	104	41	3	9	45	1.53
8203--8258	23	2.4	23	80	11	60	41	14	3	41	1.63
8252--8281	2	15.5	2	93	6	53	50	0	0	50	1.00
9233--9298	20	3.2	20	77	14	71	43	4	1	50	1.32
9412--9467	22	2.5	22	91	0	94	26	28	3	41	1.72
12389--12422	17	2.0	17	100	0	68	35	5	5	52	1.50
15027--15130	54	1.9	55	80	9	124	23	18	5	52	1.66
15101--15186	33	2.8	30	73	15	86	26	10	3	59	1.47
17209--17284	35	2.2	35	90	0	116	38	25	1	35	1.64
17681--17928	130	1.9	130	93	0	424	36	14	12	35	1.85
17855--17901	23	2.1	21	84	7	58	36	14	14	34	1.88
17695--17959	130	2.0	129	81	4	309	40	13	12	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22186--22261	36	2.1	36	97	0	143	43	14	10	31	1.79
26725--26754	15	2.0	15	100	0	60	13	46	26	13	1.80
27177--27251	35	2.2	35	95	2	134	41	16	10	32	1.82
32041--32066	11	2.4	11	100	0	52	46	0	0	53	1.00
34802--34876	37	2.0	37	82	10	91	48	4	1	46	1.29
35590--35730	60	2.3	60	81	11	164	33	15	5	45	1.70
36045--36129	38	2.3	37	76	19	88	36	32	8	22	1.84
40556--40598	22	2.0	22	86	4	61	37	0	0	62	0.95
44740--44859	35	3.4	35	89	1	177	21	25	16	36	1.94
44740--44875	71	1.9	70	87	1	200	21	22	19	36	1.95
46073--46153	39	2.1	39	84	9	103	29	18	12	39	1.87
47621--47655	3	11.7	3	87	0	52	2	25	0	71	1.00
52948--53022	28	2.6	28	80	2	96	30	41	0	28	1.56
54168--54198	2	15.5	2	100	0	62	51	0	0	48	1.00
55927--56020	49	1.9	49	100	0	188	18	13	9	58	1.62
56723--56761	20	2.1	19	86	13	55	17	12	7	61	1.54
60485--60525	2	20.5	2	100	0	82	48	0	0	51	1.00
60831--60940	7	15.4	7	86	7	159	82	0	17	0	0.66
60821--60936	1	116.0	1	68	0	61	83	0	16	0	0.64
60831--60940	36	3.1	36	89	7	163	82	0	17	0	0.66
60942--60976	14	2.5	14	95	0	61	31	11	28	28	1.92
63134--64143	33	30.3	33	90	1	1518	39	19	20	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63134--64143	100	10.1	101	89	2	1533	39	19	20	20	1.93
64546--64625	28	2.9	28	76	9	83	31	42	1	25	1.63
64792--64825	18	1.9	18	88	5	52	23	8	11	55	1.63
67990--68095	3	34.3	3	88	3	131	60	0	4	33	1.24
74396--74425	6	5.0	6	91	0	51	16	20	16	46	1.84
79075--80908	257	7.1	258	85	4	2264	33	15	17	34	1.91
79730--79809	41	1.9	41	84	2	106	26	21	18	33	1.96
79070--80908	770	2.4	766	86	4	2496	33	15	17	34	1.91
79070--80908	515	3.6	511	84	4	2344	33	15	17	34	1.91
80917--80970	15	3.6	14	78	9	54	81	3	11	3	0.95
85969--86035	19	3.4	19	69	23	50	37	1	2	58	1.23

Tables:   1

The End!