genome.fa.s4607.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004607.1 Hibiscus syriacus cultivar Beakdansim tig00010297_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89805

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7958--8010	2	26.5	2	100	0	106	50	0	0	49	1.00
8003--8074	36	2.1	36	84	10	96	56	8	5	29	1.51
8551--8586	18	2.1	18	89	5	56	66	2	5	25	1.27
8964--9035	35	2.1	35	94	0	126	30	20	8	40	1.82
23449--23510	23	2.9	21	85	7	81	20	35	25	17	1.95
23492--23531	21	1.9	21	89	0	62	25	40	27	7	1.82
27254--27893	220	2.9	220	80	9	624	36	11	14	38	1.82
27753--27785	16	2.1	17	88	11	52	48	0	15	36	1.45
28560--28593	15	2.3	15	100	0	68	14	26	5	52	1.64
30560--30601	18	2.3	18	95	0	75	23	45	0	30	1.53
33215--33254	21	2.0	21	85	5	55	57	0	25	17	1.40
43579--43646	31	2.2	31	89	0	100	32	17	19	30	1.95
43637--43715	31	2.5	31	100	0	158	30	25	10	34	1.89
44669--45327	167	4.0	168	83	2	817	30	18	12	39	1.87
44669--45283	333	1.8	332	85	1	872	30	18	12	39	1.87
47251--47313	32	1.9	33	90	3	101	41	9	4	44	1.58
51227--51275	19	2.6	19	93	0	80	26	12	30	30	1.92
51882--52007	21	5.8	22	79	13	93	23	18	27	30	1.97
51924--52007	23	3.7	23	83	13	104	20	19	28	32	1.96
52444--52500	27	2.1	28	80	9	64	28	1	10	59	1.40
66471--66606	53	2.5	53	85	3	166	27	17	25	29	1.97
67155--67259	23	4.8	22	73	14	67	24	16	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69279--69303	13	1.9	13	100	0	50	56	0	4	40	1.18
72004--72294	134	2.2	134	86	0	402	28	15	21	34	1.94
72959--72988	15	2.0	15	100	0	60	33	13	13	40	1.83
73521--73587	9	7.3	9	80	9	66	2	13	0	83	0.76
73530--73600	34	2.1	33	86	2	97	5	14	0	80	0.89
73577--73610	7	4.9	7	92	0	50	11	17	0	70	1.16
73527--73587	8	7.4	8	77	18	63	3	13	0	83	0.76
78462--78512	26	2.0	26	92	0	84	37	25	13	23	1.92
87705--87749	24	1.9	24	86	4	65	77	2	6	13	1.05
89722--89762	17	2.4	17	88	8	57	58	9	0	31	1.31

Tables:   1

The End!