Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004608.1 Hibiscus syriacus cultivar Beakdansim tig00010299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91270

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5193--5533
91
3.8
90
88
3
513
36
8
2
52
1.47
5184--5529
183
1.9
182
89
4
536
36
8
2
52
1.46
11692--11747
28
2.0
28
100
0
112
32
25
3
39
1.73
11695--11743
16
3.3
16
72
21
61
32
24
4
38
1.74
16360--16420
25
2.4
25
94
5
106
16
18
18
47
1.83
16552--16616
33
2.0
33
90
6
105
38
18
10
32
1.85
21334--21551
103
2.1
103
95
0
391
26
13
22
36
1.92
21580--21635
23
2.4
23
87
0
76
21
26
23
28
1.99
23239--23468
21
11.0
21
73
16
174
20
20
24
34
1.97
23245--23465
42
5.3
42
95
0
379
19
20
24
34
1.96
23553--23590
6
6.3
6
100
0
76
34
47
18
0
1.49
24079--24128
6
8.5
6
84
2
66
6
14
48
32
1.67
24097--24132
18
2.0
18
100
0
72
16
11
38
33
1.84
24288--24421
20
6.6
20
84
11
166
24
21
17
35
1.95
24328--24448
62
2.0
62
100
0
242
23
22
21
32
1.98
24308--24442
41
3.3
41
79
12
136
24
22
19
34
1.97
24246--24445
21
9.8
20
80
12
160
25
22
20
33
1.97
27669--27849
24
7.4
24
79
3
110
8
19
40
30
1.82
27721--27849
48
2.7
48
88
0
195
6
19
41
31
1.78
27663--27849
72
2.5
73
80
4
198
8
20
40
31
1.82
29412--29471
30
2.0
30
90
0
93
20
25
31
23
1.98
31174--31225
21
2.5
21
80
0
68
19
9
7
63
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31816--31914
29
3.5
28
92
8
166
29
10
16
44
1.80
32422--32462
20
2.1
20
90
4
66
34
19
0
46
1.50
32588--32919
111
3.0
111
95
0
574
37
7
10
45
1.67
35566--35611
18
2.6
18
89
0
74
23
28
10
36
1.89
35803--35846
22
2.0
22
100
0
88
50
13
13
22
1.77
37370--37395
3
8.7
3
100
0
52
0
30
0
69
0.89
43069--43112
23
2.0
22
90
4
70
54
0
0
45
0.99
46702--46739
2
19.0
2
100
0
76
50
0
0
50
1.00
46800--46842
16
2.7
16
96
0
77
37
11
16
34
1.85
46863--46930
31
2.2
31
94
0
118
26
10
25
38
1.88
65876--65911
2
18.0
2
94
0
63
47
0
2
50
1.15
69786--69825
18
2.2
18
86
8
55
55
0
2
42
1.13
84183--84212
16
1.9
15
93
6
51
16
26
36
20
1.93
84433--84466
14
2.4
14
95
0
59
76
0
0
23
0.79
84506--84581
36
2.2
36
86
9
104
43
5
2
48
1.39
84545--84613
29
2.3
30
82
2
86
39
7
4
49
1.50
84488--84670
100
1.8
103
82
10
243
43
6
4
45
1.49
84513--84645
64
2.1
63
83
6
162
42
6
4
46
1.48
84673--84777
29
3.5
29
78
14
115
42
5
3
47
1.45
84892--84917
13
2.0
13
100
0
52
30
15
30
23
1.95
85478--86178
84
8.5
83
79
7
739
23
21
25
29
1.99
85433--86178
248
3.0
248
93
1
1214
24
20
25
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85462--86178
164
4.4
163
82
8
719
23
21
25
29
1.99

Tables:   1

The End!