Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004609.1 Hibiscus syriacus cultivar Beakdansim tig00010303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71670

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9031--9120
1
90.0
1
75
0
72
86
0
13
0
0.57
9038--9120
10
8.2
10
88
6
123
86
0
13
0
0.56
9028--9120
11
8.7
11
82
12
106
86
0
13
0
0.58
10264--10491
83
2.7
83
91
1
357
26
11
23
38
1.89
11330--11998
113
6.0
113
87
3
811
37
14
17
29
1.90
11927--11982
17
3.2
17
68
26
53
48
8
25
17
1.76
12231--12307
3
24.7
3
84
5
91
38
0
0
61
0.96
13660--13705
16
2.9
16
77
3
58
36
0
0
63
0.95
15471--15504
15
2.4
15
90
9
54
32
0
17
50
1.47
29651--29726
21
3.6
21
92
0
134
46
21
14
18
1.84
31153--31177
11
2.3
11
100
0
50
16
16
52
16
1.76
39743--39770
14
2.0
14
100
0
56
21
21
7
50
1.72
40446--40719
6
45.7
6
91
0
368
46
3
3
46
1.38
40446--40719
8
34.2
8
86
0
368
46
3
3
46
1.38
40446--40719
14
19.6
14
87
0
368
46
3
3
46
1.38
40987--41093
9
12.3
9
77
14
100
79
2
17
0
0.85
40988--41082
16
6.2
16
75
19
96
78
3
17
0
0.87
40982--41100
26
4.6
25
80
10
116
78
2
17
1
0.95
40961--41084
58
2.1
57
81
14
139
76
5
16
0
1.02
41006--41100
7
12.6
7
77
16
68
78
2
17
1
0.90
40982--41100
17
7.1
16
83
7
112
78
2
17
1
0.95
41008--41093
8
10.5
8
74
19
54
79
2
18
0
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41736--41805
28
2.5
28
86
6
90
37
34
4
24
1.75
41736--41807
26
2.6
28
81
12
87
38
33
4
23
1.74
43053--43408
54
6.6
53
85
4
374
32
10
16
41
1.82
43089--43408
54
5.9
54
86
4
396
31
10
16
41
1.82
43089--43407
162
2.0
162
86
4
457
31
10
16
41
1.82
43742--43871
41
3.1
40
75
8
100
26
20
24
28
1.99
43435--43977
275
2.0
274
90
2
867
28
16
20
34
1.94
44490--44888
139
2.9
138
89
3
563
35
16
21
26
1.95
44785--44848
17
3.3
19
71
20
60
40
10
23
25
1.87
56717--56753
14
2.6
15
83
8
51
81
0
18
0
0.70
58892--58973
43
1.9
43
100
0
164
39
0
0
60
0.96
58914--58985
34
2.1
34
92
0
117
40
0
0
59
0.97
58916--58973
9
6.7
9
77
15
59
39
0
0
60
0.97
63539--63607
35
1.9
37
94
5
124
34
7
10
47
1.65
64633--64748
60
1.9
60
86
6
164
35
21
2
40
1.67
64866--65015
60
2.5
58
85
6
203
40
3
22
33
1.71
65224--65259
3
12.0
3
100
0
72
33
0
0
66
0.92
66578--66625
23
2.1
22
85
11
62
18
8
6
66
1.39
66578--66625
22
2.1
23
85
11
64
18
8
6
66
1.39

Tables:   1

The End!