Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000461.1 Hibiscus syriacus cultivar Beakdansim tig00000856_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78931

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
436--498
31
2.1
30
84
3
81
42
14
3
39
1.61
637--666
2
15.0
2
100
0
60
50
0
0
50
1.00
1304--1575
136
2.0
136
96
0
499
29
22
21
26
1.99
1736--1830
21
4.5
21
77
5
93
31
10
15
42
1.81
1735--1816
42
2.0
42
85
0
110
29
12
17
41
1.85
3635--3688
21
2.6
21
90
0
81
29
12
16
40
1.86
5954--5983
6
5.0
6
95
0
51
53
16
0
30
1.44
8248--8503
130
2.0
130
97
0
485
36
13
15
34
1.87
15474--15508
18
1.9
18
88
0
52
48
14
31
5
1.67
15788--15848
28
2.1
29
84
3
79
32
4
3
59
1.35
16252--16322
30
2.4
30
95
0
124
54
4
12
28
1.56
21031--21126
48
2.0
49
91
2
158
34
10
9
45
1.71
23644--23789
73
2.0
73
98
0
283
49
6
13
30
1.67
24487--24553
5
13.8
5
69
12
50
71
1
2
23
1.08
24515--24553
20
2.0
20
100
0
78
71
0
2
25
0.98
25394--25421
12
2.3
12
100
0
56
50
0
14
35
1.43
25909--26052
72
2.0
71
85
6
193
39
18
9
31
1.83
32186--32212
2
13.5
2
100
0
54
51
0
0
48
1.00
34138--34178
20
2.0
20
86
9
57
56
2
0
41
1.13
36125--36238
52
2.2
52
76
9
126
48
11
7
33
1.66
36988--37070
24
3.4
24
86
6
121
21
0
28
49
1.50
36992--37073
26
3.2
26
89
3
123
21
0
25
52
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37025--37081
26
2.2
26
80
3
60
29
0
22
47
1.52
37328--37441
53
2.2
51
89
7
167
56
9
7
26
1.59
37328--37444
26
4.4
28
79
17
135
56
9
7
26
1.58
46403--46479
21
3.5
22
76
13
79
29
18
15
36
1.92
46970--47003
13
2.6
13
90
9
52
47
11
2
38
1.55
48745--48778
12
2.7
13
86
9
52
44
5
5
44
1.52
49266--49305
21
1.9
21
94
0
71
32
22
22
22
1.98
55848--55885
6
6.3
6
93
0
67
18
0
0
81
0.69
60310--60924
170
3.6
170
80
5
681
28
18
19
33
1.95
61016--61118
33
3.1
34
84
4
138
18
19
13
48
1.81
61775--61839
6
10.8
6
77
12
71
33
0
16
49
1.47
62498--62583
41
2.1
42
82
10
106
34
9
17
38
1.82
62619--62690
37
1.9
37
88
5
110
62
12
1
23
1.38
62620--62679
17
3.4
17
68
20
50
61
15
1
21
1.42
64960--65010
19
2.6
19
78
3
57
60
0
0
39
0.97
64970--65147
20
9.1
20
68
18
74
65
1
0
33
1.00
64954--65087
38
3.6
37
71
21
111
59
1
0
38
1.06
65064--65154
10
8.8
10
75
10
58
71
0
0
28
0.86
69140--69200
21
2.9
21
85
0
68
44
11
16
27
1.82
69191--69236
21
2.2
22
80
11
60
41
10
17
30
1.84
77453--77813
131
2.8
130
83
3
451
33
10
17
38
1.84

Tables:   1

The End!