genome.fa.s4610.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004610.1 Hibiscus syriacus cultivar Beakdansim tig00010309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55073

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21--65	22	2.0	23	86	4	65	15	15	13	55	1.69
5804--6536	244	3.0	244	97	0	1382	37	18	12	31	1.88
9173--9252	25	3.2	24	69	13	63	17	22	16	43	1.87
9332--9370	20	2.0	20	89	0	60	28	20	7	43	1.79
14968--15034	31	2.2	31	94	0	116	37	13	26	22	1.91
16979--17011	15	2.2	15	94	0	57	33	27	18	21	1.96
17612--17688	31	2.5	31	91	0	118	40	12	20	25	1.89
20090--20157	31	2.2	31	84	7	84	55	2	1	39	1.24
20102--20173	31	2.3	31	80	4	83	54	4	1	40	1.28
26423--26458	15	2.4	15	100	0	72	16	19	41	22	1.90
30944--30978	13	2.8	13	95	4	63	31	17	37	14	1.89
30972--31005	11	3.1	11	95	0	59	38	23	17	20	1.93
31005--31084	22	3.4	22	73	18	79	33	18	37	10	1.84
31033--31198	28	5.6	28	78	13	188	33	19	35	10	1.87
31007--31203	61	3.5	53	88	8	211	33	19	36	10	1.86
31027--31217	61	3.1	61	96	0	346	34	20	34	10	1.88
31231--31339	29	3.8	29	95	2	184	14	31	32	22	1.94
31389--31462	37	2.0	37	97	2	141	16	45	13	24	1.83
31467--31501	18	1.9	18	100	0	70	28	17	25	28	1.97
31591--31636	23	2.0	23	100	0	92	47	4	39	8	1.54
31591--31651	23	2.6	23	86	5	59	50	6	36	6	1.54
31639--31697	21	2.9	21	92	2	93	61	0	37	1	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31900--31991	46	2.0	48	85	8	127	42	1	11	44	1.48
34369--34411	14	3.2	13	80	9	50	48	4	4	41	1.44
34351--34401	17	3.2	17	75	16	63	43	9	5	41	1.62
34377--34693	26	12.8	25	73	16	157	45	9	2	42	1.48
34386--34463	11	6.5	12	73	15	54	50	5	1	43	1.32
34595--34756	11	13.5	11	68	24	64	44	9	2	43	1.49
34505--34750	122	2.0	123	96	2	451	43	10	2	43	1.51
37569--37627	26	2.3	24	78	16	64	40	3	8	47	1.51
38429--38491	28	2.2	30	91	5	103	57	11	0	31	1.34
38433--38498	28	2.4	28	85	10	98	56	10	0	33	1.34
38468--38516	21	2.3	21	85	3	71	53	16	0	30	1.43
39007--39064	25	2.3	25	79	5	64	24	43	15	17	1.87
39122--39201	29	2.8	29	98	0	151	16	30	33	20	1.94
42819--42848	12	2.5	12	100	0	60	16	30	10	43	1.81
43835--43876	16	2.6	16	88	3	57	47	0	2	50	1.14
46719--46755	5	7.4	5	90	0	56	2	37	40	18	1.65
47118--47142	2	12.5	2	100	0	50	52	0	0	48	1.00
52603--52632	12	2.5	12	94	0	51	36	16	6	40	1.75

Tables:   1

The End!