genome.fa.s4611.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004611.1 Hibiscus syriacus cultivar Beakdansim tig00010313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77659

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3881--3960	2	40.5	2	94	2	144	50	0	1	48	1.08
6508--6541	18	1.9	17	88	5	50	73	2	5	17	1.16
10658--10693	17	2.1	17	89	0	54	27	19	22	30	1.98
11960--12049	2	44.5	2	80	10	103	48	2	1	47	1.21
12484--12605	64	1.9	63	85	5	165	20	6	12	60	1.54
14946--15051	55	1.9	55	94	0	185	27	16	7	48	1.74
15160--15208	22	2.3	21	78	3	53	26	10	26	36	1.88
15835--15871	19	1.9	19	88	0	56	45	2	10	40	1.53
16097--16130	16	2.1	16	94	0	59	47	8	14	29	1.75
17606--17652	25	1.9	24	86	4	67	21	25	21	31	1.98
17597--17784	93	2.0	92	85	4	252	31	22	17	28	1.96
21008--21077	15	4.7	15	96	0	122	37	27	21	14	1.92
21791--21924	23	5.8	23	78	3	108	17	27	23	31	1.97
39578--39810	40	5.9	40	86	4	312	30	28	18	23	1.97
39578--39810	79	2.9	79	83	4	301	30	28	18	23	1.97
39959--40005	22	2.1	23	88	4	69	46	12	4	36	1.62
41562--41610	21	2.5	19	87	9	64	30	14	20	34	1.92
42047--42437	55	7.1	55	90	0	559	34	12	18	34	1.88
42581--42766	46	4.0	46	92	0	309	45	10	20	24	1.82
48983--49151	40	4.2	40	85	1	214	32	27	16	23	1.96
49826--49878	19	2.8	19	100	0	106	16	22	33	26	1.96
50659--50723	27	2.5	26	85	12	80	56	24	0	18	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50664--50744	29	3.0	28	83	13	91	56	19	1	22	1.49
52671--52781	44	2.5	44	81	9	138	30	18	20	30	1.96
55175--55224	24	2.1	24	85	7	66	24	2	14	60	1.45
60230--60384	65	2.4	64	86	5	197	31	17	21	29	1.96
65427--65681	20	12.6	20	73	11	189	38	24	17	19	1.92
65427--65677	121	2.1	120	84	8	323	39	24	16	19	1.92
65488--65678	40	4.7	41	88	1	278	38	24	16	19	1.92
66238--66305	20	3.3	20	81	6	84	52	16	16	14	1.74
66293--66373	33	2.5	33	85	0	108	48	19	20	11	1.79
66369--66484	51	2.2	52	86	4	162	12	22	20	43	1.86
66369--66513	20	8.1	19	72	18	114	13	22	19	44	1.85
66611--66651	20	2.0	20	100	0	82	24	9	19	46	1.80
68399--68487	42	2.1	42	81	8	101	24	33	19	22	1.97
69956--70014	19	3.4	19	73	22	74	47	18	20	13	1.82
69956--70049	33	2.8	33	88	3	127	45	22	19	12	1.83
70021--70057	19	1.9	19	100	0	74	43	27	16	13	1.85
70099--70216	19	6.4	19	70	14	104	15	18	19	46	1.84
70064--70157	33	2.8	33	85	0	116	14	21	18	45	1.85
70139--70216	39	2.1	37	87	4	111	15	19	17	47	1.83
73673--73713	20	2.0	20	90	0	64	39	21	17	21	1.93
73702--73759	21	2.9	20	72	7	64	17	20	22	39	1.92
73756--73829	21	3.5	21	92	0	112	33	16	24	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73693--73787	41	2.3	40	76	1	100	25	17	22	34	1.96

Tables:   1

The End!