Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004612.1 Hibiscus syriacus cultivar Beakdansim tig00010317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79459

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1022--1558
190
2.7
193
88
5
765
32
16
13
37
1.87
3644--3709
33
2.0
33
93
0
114
22
46
0
30
1.52
3743--3786
21
2.1
21
86
0
61
18
31
9
40
1.81
3869--3901
15
2.2
15
94
0
57
12
60
6
21
1.53
6013--6432
182
2.3
182
84
2
540
28
14
14
42
1.84
7264--7301
20
1.9
20
94
0
67
21
13
13
52
1.73
7262--7307
20
2.3
20
80
0
65
19
15
10
54
1.70
7236--7703
182
2.6
182
86
1
634
27
16
14
41
1.87
8701--8748
20
2.4
20
79
6
62
20
20
8
50
1.74
8487--8962
182
2.6
182
88
1
686
28
15
14
41
1.86
9931--9995
3
21.7
3
100
0
130
0
0
32
67
0.91
22989--23043
9
6.2
8
83
10
56
80
1
7
10
0.99
23040--23080
18
2.3
19
83
12
59
73
0
21
4
1.02
24380--24703
135
2.4
134
85
3
427
33
21
16
29
1.95
28613--28643
3
10.3
3
100
0
62
67
0
0
32
0.91
28676--28709
17
2.0
17
88
0
50
79
0
5
14
0.91
30103--30169
3
22.3
3
79
11
75
65
2
0
31
1.07
30103--30189
33
2.5
33
85
10
104
63
2
1
33
1.15
30104--30179
13
5.2
14
77
17
75
63
2
1
32
1.17
30171--30259
37
2.5
35
77
10
92
51
2
1
44
1.21
30280--30319
19
2.0
20
90
4
64
47
2
0
50
1.14
30334--30358
11
2.3
11
100
0
50
44
8
8
40
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30311--30449
38
3.6
39
77
17
132
45
7
4
43
1.51
30433--30472
2
20.5
2
94
5
73
50
0
0
50
1.00
30399--30512
60
1.9
58
82
12
142
43
5
3
47
1.43
31201--31894
81
8.4
81
80
6
723
23
21
24
29
1.99
31196--31894
165
4.2
164
90
2
1067
24
21
24
29
1.99
31241--31894
330
2.0
331
95
0
1177
23
21
25
29
1.99
35241--35285
19
2.4
19
96
3
83
68
8
11
11
1.39
36995--37022
3
9.3
3
100
0
56
67
0
0
32
0.91
37055--37088
17
2.0
17
88
0
50
79
0
5
14
0.91
37134--37176
17
2.4
18
85
14
63
76
4
2
16
1.05
37185--37225
16
2.6
15
88
7
55
73
0
4
21
1.02
37185--37256
12
6.6
11
73
16
53
70
1
4
23
1.12
38480--38540
3
20.3
3
77
12
63
65
3
0
31
1.09
38481--38555
13
5.5
14
78
13
77
62
2
1
33
1.17
38648--38687
19
2.0
20
90
4
64
47
2
0
50
1.14
38702--38726
11
2.3
11
100
0
50
44
8
8
40
1.63
38686--38807
35
3.4
36
80
13
105
45
8
4
40
1.55
38795--38838
2
22.5
2
95
4
81
50
0
0
50
1.00
41610--41640
15
2.1
15
93
0
53
9
6
58
25
1.54
42455--42651
2
101.0
2
68
19
87
48
2
4
44
1.35
42455--42586
15
9.2
13
70
19
68
48
3
4
43
1.38
42455--42648
13
13.8
14
69
21
88
48
2
4
44
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42455--42574
28
4.2
28
76
9
109
48
2
4
45
1.35
42718--42755
20
2.0
20
89
5
60
36
0
34
28
1.58
43145--43206
21
3.0
21
78
4
54
37
30
3
29
1.73
43247--43271
13
1.9
13
100
0
50
56
4
0
40
1.18
43247--43279
15
2.3
15
90
10
52
54
6
0
39
1.25
43491--43573
34
2.4
34
95
0
148
48
10
4
36
1.60
43519--43573
16
3.3
16
72
18
58
49
9
3
38
1.52
43590--43656
20
3.2
21
80
6
73
46
2
7
43
1.47
43518--43676
20
8.4
20
66
21
67
47
6
5
39
1.54
45432--45510
14
5.7
14
69
3
52
49
29
1
20
1.57
45561--45615
21
2.6
21
85
0
74
45
27
0
27
1.54
47979--48015
16
2.3
16
100
0
74
0
13
24
62
1.31
48506--48542
17
2.2
17
100
0
74
24
16
32
27
1.96
50341--50443
27
3.8
27
90
0
143
43
10
14
31
1.80
54657--54743
24
3.5
24
77
11
66
6
14
44
33
1.72
54681--54744
28
2.3
28
83
0
74
4
12
45
37
1.63
55659--55710
16
3.2
17
72
22
58
42
0
21
36
1.53
68802--68861
24
2.5
24
81
5
77
21
18
18
41
1.90
73159--73188
7
4.4
7
91
8
53
0
0
13
86
0.57
73159--73187
13
2.2
13
100
0
58
0
0
13
86
0.58
75228--75294
34
2.0
34
84
0
89
41
17
17
22
1.90
75337--75404
24
2.9
23
82
4
91
44
20
11
23
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78714--78773
26
2.3
26
94
0
102
31
23
20
25
1.98
78740--79085
55
6.3
55
81
2
356
26
19
25
28
1.99
78851--79002
28
5.5
26
64
20
78
25
20
25
28
1.99
78877--79024
27
5.4
26
67
20
88
25
20
28
26
1.99
78742--79083
110
3.1
109
89
2
481
26
19
25
28
1.99

Tables:   1

The End!