genome.fa.s4617.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004617.1 Hibiscus syriacus cultivar Beakdansim tig00010329_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65478

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2818--2856	17	2.2	18	90	4	62	15	7	38	38	1.76
4594--4641	15	3.1	15	76	5	51	35	0	6	58	1.23
4594--4667	14	5.1	14	76	11	60	39	0	4	56	1.18
4601--4671	29	2.4	29	77	13	74	38	0	4	57	1.18
9478--9637	37	4.3	38	92	4	258	43	2	8	45	1.48
10364--10538	20	8.6	20	81	5	181	27	25	20	27	1.99
10704--10756	22	2.4	22	77	0	61	24	39	16	18	1.91
11141--11208	20	3.5	20	87	2	102	11	16	22	50	1.77
12918--12967	18	2.8	18	100	0	100	32	20	6	42	1.76
13110--13177	20	3.4	20	95	0	118	35	26	20	17	1.95
13110--13196	40	2.3	38	81	11	101	39	24	20	16	1.92
13227--13275	20	2.5	20	93	0	80	20	18	22	38	1.93
13773--13832	21	2.9	21	76	0	66	21	31	23	23	1.98
15247--15283	14	2.6	15	83	12	51	43	0	13	43	1.44
15527--15821	20	15.8	20	77	14	137	24	17	22	34	1.96
15527--15761	94	2.5	94	83	4	278	23	18	23	34	1.96
15547--15821	74	3.7	74	89	1	421	24	17	23	35	1.95
15465--15667	54	3.6	54	78	7	217	24	20	20	34	1.97
15638--15741	54	1.9	54	92	0	172	21	15	27	35	1.93
15794--16061	140	1.9	138	96	1	491	42	15	13	28	1.84
18426--18472	24	2.0	24	95	0	85	34	17	21	27	1.95
19289--19368	20	4.0	20	91	0	115	26	23	27	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19290--19478	20	9.3	20	79	7	114	29	21	23	25	1.99
23636--23704	24	2.9	24	80	0	75	15	21	14	47	1.81
26733--26770	2	19.0	2	100	0	76	50	0	0	50	1.00
27051--27101	12	4.3	12	76	18	54	31	0	1	66	1.03
27091--27258	52	3.2	52	93	0	291	44	0	2	52	1.16
27091--27258	24	6.4	28	78	13	180	44	0	2	52	1.16
27766--27824	31	1.9	31	92	0	100	44	10	6	38	1.65
30871--31232	45	8.0	46	79	3	292	42	16	18	22	1.89
30881--31232	90	3.9	88	82	3	346	42	17	18	22	1.89
30871--31232	135	2.7	135	82	0	402	42	16	18	22	1.89
31239--31427	37	5.1	37	75	3	132	45	12	16	25	1.82
31268--31434	74	2.3	73	80	9	173	47	11	15	24	1.79
31866--31901	18	2.0	18	94	0	63	52	0	16	30	1.44
34093--34188	34	2.9	34	82	1	113	21	13	21	42	1.87
35614--35648	2	17.5	2	100	0	70	51	0	0	48	1.00
38237--38270	17	2.0	17	88	0	50	73	2	0	23	0.97
38805--38942	75	1.9	74	89	3	197	56	13	0	28	1.43
39298--39351	25	2.1	25	80	16	58	20	9	9	61	1.54
43410--43439	2	15.0	2	100	0	60	50	0	0	50	1.00
53411--53475	30	2.2	30	83	5	78	21	9	3	66	1.34
53411--53543	60	2.3	59	75	5	135	22	9	6	61	1.49
55643--55688	23	1.9	24	82	8	58	54	8	6	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61658--61698	21	1.9	22	85	5	57	41	17	21	19	1.90
63775--63857	29	2.8	29	77	13	89	33	16	4	44	1.69

Tables:   1

The End!