genome.fa.s4618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004618.1 Hibiscus syriacus cultivar Beakdansim tig00010330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66048

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1567--1720	74	2.1	72	84	10	197	39	4	4	51	1.43
3123--3172	16	3.0	16	94	5	82	46	6	24	24	1.75
3114--3176	18	3.7	18	85	14	89	52	4	22	20	1.65
8113--8299	31	6.0	31	90	3	279	19	18	22	39	1.92
14428--14512	40	2.1	41	97	2	163	37	14	23	24	1.92
24508--24541	3	10.7	3	87	12	50	0	32	0	67	0.91
24508--24541	13	2.6	13	100	0	68	0	32	0	67	0.91
24997--25050	21	2.6	21	100	0	108	33	20	27	18	1.96
25611--25824	103	2.1	103	94	0	374	25	11	25	37	1.89
25855--25907	23	2.3	23	90	6	81	20	24	24	30	1.99
31942--31984	21	2.0	21	90	0	68	32	27	23	16	1.96
32534--32751	103	2.1	103	94	0	382	24	12	24	38	1.91
32768--32830	23	2.7	23	87	0	90	20	23	26	28	1.99
36047--36089	21	2.0	21	86	8	61	72	0	0	27	0.85
43298--43412	52	2.2	52	96	0	212	25	17	12	45	1.83
49242--49563	110	3.0	109	81	9	392	30	18	11	40	1.85
49220--49598	110	3.6	105	79	10	389	31	17	12	39	1.86
50627--50888	91	3.0	89	86	3	343	38	14	20	26	1.91
51277--51321	17	2.6	18	82	10	58	28	2	0	68	1.01
51280--51324	23	2.0	23	87	12	67	28	2	0	68	1.01
51280--51338	20	2.9	21	82	5	66	33	1	0	64	1.04
55516--55579	29	2.2	28	81	8	76	48	6	12	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55768--55845	30	2.5	32	87	6	115	57	6	6	29	1.49
62317--62494	92	1.9	93	89	1	277	30	16	20	31	1.95
62733--63170	175	2.5	174	88	5	636	37	12	16	33	1.86
63021--63623	72	8.2	73	79	10	481	38	13	16	31	1.87
62733--63170	174	2.5	173	87	5	625	37	12	16	33	1.86
63092--63250	39	4.3	38	70	12	109	39	13	18	28	1.89
63021--63680	37	18.1	35	70	12	178	38	13	17	31	1.87
63012--63623	145	4.2	143	78	9	508	38	13	17	31	1.87
63278--63687	110	3.7	112	88	3	607	38	13	16	31	1.87
63278--63676	38	10.8	37	74	8	278	37	13	17	32	1.88

Tables:   1

The End!